Basic Information

Insect: Riptortus pedestris
Gene Symbol: -
Assembly: GCA_019009955.1
Location: GWHBAZH00000003:147038783-147042479[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 4.6e-05 0.0027 18.2 0.8 1 23 87 110 87 110 0.98

2 8 0.00054 0.031 14.8 0.5 2 23 117 139 116 139 0.92

3 8 0.00034 0.02 15.4 0.2 2 23 146 168 145 168 0.94

4 8 0.00094 0.054 14.0 0.7 1 23 174 197 174 197 0.94

5 8 0.0052 0.3 11.7 0.6 1 23 203 226 203 226 0.94

6 8 0.00018 0.01 16.3 2.1 1 23 232 255 232 255 0.97

7 8 3.2e-05 0.0019 18.7 1.5 1 23 261 284 261 284 0.96

8 8 0.0015 0.087 13.4 0.7 1 23 290 313 290 313 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	4.6e-05	0.0027	18.2	0.8	1	23	87	110	87	110	0.98
2	8	0.00054	0.031	14.8	0.5	2	23	117	139	116	139	0.92
3	8	0.00034	0.02	15.4	0.2	2	23	146	168	145	168	0.94
4	8	0.00094	0.054	14.0	0.7	1	23	174	197	174	197	0.94
5	8	0.0052	0.3	11.7	0.6	1	23	203	226	203	226	0.94
6	8	0.00018	0.01	16.3	2.1	1	23	232	255	232	255	0.97
7	8	3.2e-05	0.0019	18.7	1.5	1	23	261	284	261	284	0.96
8	8	0.0015	0.087	13.4	0.7	1	23	290	313	290	313	0.95

Sequence Information

Coding Sequence: ATGGACAATTGGATGGACCCTTTTCAGTGTAATTCAGACTCAGAAAGATTCACTCGTGCCTTGTTTATGAATCACTCTGGTGGTAGCGTTTGGGAACAGCCTTCTACATCATTTCCAGAAAATTCATATAACTATGATTATGGCTACCAAAATGGTGGACAGTATGGAGCTCCTTATAATGGAGAAGGAAATAATATGGGAAACGGACATGTTTACCCTAATTCTCACGGGCAGCCTTCTATGGAATCGCCTATGGGCTACAACTGTGATCAGTGTGATTTTGTCACGGACAAACCGAGTTCTTTAAAAAGCCACATAAAAACAAAACATGGAAATCAAAAAACTCTCCAGTGCCCTCACTGTGAATATGTTGCTGCACAGACAGCTCACCTGAAGCGGCACATAGCAGCTCGGCATAGCAGCGACAAACCGAATAAATGCCCTTACTGTTCGTACAGCTCCGTCCAGCCGGGATCACTAAGGACTCACCTCCTAGCTAAACACTCCGACCAGAAGCCGTACAAGTGTTTGCACTGTGACTTCACTACATCGGAATCGAATGAGCTGAAAGAGCACATCGCAGGCCTTCACGCTGATGAAAAACCTTACAAATGCCCACTGTGTGAGTATTGCGCTGCTGAGAACAGTGTACTCCGGAAGCACATCACCGCAAAGCATATCAAGCAGAAGCCATACCAGTGCCCCCACTGCGAGTACTGCACCGCGCTCTCGGGCAATCTCAAGGTCCACGTCATGTCTAAGCACACTAAGGAGAAGCCCCACCAATGCCCCCACTGCAAATATGCTGCCGTCCAATCTGCCAATCTCCGTCGGCATATTATATCTCGACATACTAAAGACAAACCATTTCAGTGTATACTCTGCAATTACAGTGCTTCCCAGTCTGTCGATTTGAGAAAACACATGCTGAGGAAACACAATTCTTAA
Protein Sequence: MDNWMDPFQCNSDSERFTRALFMNHSGGSVWEQPSTSFPENSYNYDYGYQNGGQYGAPYNGEGNNMGNGHVYPNSHGQPSMESPMGYNCDQCDFVTDKPSSLKSHIKTKHGNQKTLQCPHCEYVAAQTAHLKRHIAARHSSDKPNKCPYCSYSSVQPGSLRTHLLAKHSDQKPYKCLHCDFTTSESNELKEHIAGLHADEKPYKCPLCEYCAAENSVLRKHITAKHIKQKPYQCPHCEYCTALSGNLKVHVMSKHTKEKPHQCPHCKYAAVQSANLRRHIISRHTKDKPFQCILCNYSASQSVDLRKHMLRKHNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01309976;
90% Identity: iTF_01309976;
80% Identity: iTF_01309976;