Rped010313.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000004:113201927-113222581[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 9.9e-05 0.0058 17.1 3.0 1 23 172 194 172 194 0.96 2 30 2.5e-05 0.0015 19.0 1.4 1 23 208 230 208 230 0.98 3 30 0.00078 0.045 14.3 1.5 1 23 254 277 254 277 0.97 4 30 9.1e-05 0.0053 17.2 0.8 2 23 284 306 283 306 0.96 5 30 0.0009 0.052 14.1 0.1 2 23 413 435 412 435 0.93 6 30 0.075 4.4 8.1 0.8 1 23 466 489 466 489 0.94 7 30 0.53 30 5.4 0.1 3 23 497 518 496 518 0.96 8 30 0.00095 0.055 14.0 0.6 2 23 588 610 587 610 0.96 9 30 7.9 4.6e+02 1.7 0.5 1 23 629 652 629 652 0.83 10 30 0.38 22 5.9 0.3 2 14 659 673 658 682 0.77 11 30 0.01 0.59 10.8 0.1 2 23 691 713 691 713 0.95 12 30 0.0033 0.19 12.3 0.4 1 23 719 742 719 742 0.95 13 30 0.00079 0.046 14.3 2.6 1 23 750 772 750 772 0.97 14 30 0.0049 0.29 11.8 1.1 2 23 833 855 832 855 0.95 15 30 0.00064 0.037 14.6 2.4 2 23 862 883 861 884 0.95 16 30 0.002 0.12 13.0 2.9 1 21 906 926 906 927 0.95 17 30 0.00015 0.0087 16.6 3.8 1 23 946 969 946 969 0.97 18 30 0.029 1.7 9.3 1.3 1 23 972 995 972 995 0.93 19 30 0.91 53 4.7 1.6 2 23 1002 1025 1001 1025 0.94 20 30 9.9 5.7e+02 1.4 1.6 6 23 1037 1055 1032 1055 0.82 21 30 0.046 2.7 8.7 0.1 1 23 1061 1084 1061 1084 0.93 22 30 0.0002 0.012 16.2 3.4 1 23 1092 1114 1092 1114 0.98 23 30 0.0021 0.12 13.0 0.2 2 23 1120 1141 1119 1141 0.95 24 30 3.6e-05 0.0021 18.5 0.6 2 23 1206 1228 1205 1228 0.96 25 30 0.28 16 6.3 1.8 2 23 1306 1328 1305 1328 0.94 26 30 7.9 4.6e+02 1.7 3.7 2 23 1369 1390 1368 1390 0.94 27 30 0.072 4.2 8.1 5.2 1 23 1402 1425 1402 1425 0.95 28 30 0.0018 0.11 13.1 0.3 1 23 1460 1482 1460 1482 0.98 29 30 0.00052 0.03 14.9 1.8 1 23 1488 1511 1488 1511 0.94 30 30 0.053 3.1 8.5 0.7 1 20 1516 1535 1516 1537 0.93
Sequence Information
- Coding Sequence
- ATGGATAATTCATCATTGAAGGATTATGAAGAGCTCTGCAGACTTTGTGCTAGTTATGATGCCATCAAACTTCCAATTTTCAGTGAACGTGGCCGTGCTAGAAACCTTAGAGATAAAATTACCACTTGTCTTCCCTTTGATGTATCTGAAGATGATCTCTTGCCAAAGTCTTTATGTTACCGCTGTATTTATAACCTAGAAAATTTCTATGATTTCCGTCGAGGTTGTATTGATGCTAGAACTAGGCTTGAGAATGTAATTAAAGAAGTCTTGAAGAATGAGCCTAAGGAAGAGAAGACAGTTATTAAAATTGAAGATACTCTTAATGATGAGCAGATCCGTGCAGAAAGTGTCTTGATAGAATCAGATGGAGAAGGAGATTGCCCAAATCCGGCTGACTTTGTAGAAGCTTGTTGGGAAGAAAGGACATCTGTCAAAACTGAAAGTTCATTAACAGTTGAGTCTGATTCTCCTCATCATGGGTCAAAAAATGGGGATGAAGAAGAAGGAGCATTCCCCTGCAAAGTTTGTGAGAGAAGCTTCTGCTCAAAAAGTTCTTTGACCATTCATGCAAAATTTCATCAAGATATTTCCGGAGGATCAGAAAGTAATAAAGAAAATTATTCTTGTTTTGTCTGTGATAAAGTTTTTTCAAGCAAAGGACATTTGGCTCTTCATTCTAAAGTTCATATTGGGGAAACAAGTTCCCCTCCATTATCAAATTCTTCTAGTAGATCCAGCCCAGCTAATTTGAAGCTATATCGTTGTGATTTGTGCAACAAGACATATTCTATGGCTAAACATTTATGGGGGCATGTGAGTACTACTCATAAAGGACATCCACTTGTTACTTGTAGCTTGTGTCAAAGAACCTTTTCTTCAATTTCAAATTTGGAAGATCACAAACGAGTAAAACATAAAGATGATCAGTTAATTGAAGAGGTGGGTGAGTCACCAAAACTTATTGAGGATGATTCAGGTATAGAAAAGAAATCTGAAGAACTTCCTTCTAATAGGAGAAAAAATTCAAAGCCCAGAAAAATTGAGCGTGACATGAATACTTCTGAAAGTAACAGCACATTCTCAAACTCTGAAAATACTCATTCTGCTACTGAAAGTATGCAAACTATTTCTTCTAAAAATACTAATAGTCAGCAGCACAATCGAAATGCTTATCAAATAGAAAAAACATATGCCAGAACTCAAAAACAGAATACTATTGTGGACTCTACTCTTTCTTGTTTTATGTGTGGAGAACGATTTAGAGGAGCAGATCAATTGAATCAACATCTTCTTGAAGCTCATGCTTATGAAGGTCCCTTGGATTTTAGCAATTATAGTAGAAACGACTGTGGAGAAGACTATGCTGAAAGCATGATGGAAGCCGAAACTGTGTTTTGTTGTGAAATTTGTATTAGGGAATTCAATGATAGAGGAAGTCTTTGGTTGCATTTGTTGTATTCACATAAAAATGCAGCATCTAAGGCCTGTGGAATCTGCTTAAAAATATGTGATGACACTGAAAGTTTAGTTCAGCATGTTGAAACAGCTCATCCAAAAAGTAAGTCAGATCAAAGGAGGTATAGCTGCCAGGTATGCGCTCGGCAGCATGATTCTAGGAAAAAGTTAGTTACCCATGCCAAGATTCATAAATTAGTAGATGCAGAGGGAAATCTTGTTGATCCAGAAACTGTTGTTGTCCAGAATGCAGATTTCTATTCTGATGGTTTTATTCCCCATCCGATGGATGACAATTATTTAAGTTGTGAAGTTTGTTTCAAAGTATTTGAAAATGACAGTAAACTATTAAAACATAAGAGAAGTGCTCATAAAGACTTAGCAGGTTTAAATAACTCCTTAAATAGTGGAGCTTATCACTTTTATTTTGCCTGTGAGATTTGTGGCTTGTCACATTTATCAAGGGCAGATAGATGGAAGCATATGTCTACAACCCATGCTGGAGACCCCAACATTACTTGTGAAGTACCTGAATGTGGGAAAGTTTTCCCTACTAGTTCCATTAAAAAAGAACATGCTTCACATCATGCTGCACAAGGGCAATATCCTAATACTTGTGAAGTTTGTGGGAAAATGTGGAAAACTAGGGTTGAATATTGGAAGCATATGATGGGTGTCCATCCAGATTGCTTACCATTTATTTGTGGAGTTTGTCTTAAAGTATTTTGTAATTTAGCTACATTGGTTAGCCATGTTAGGGAAACTCATTGGCCTTTAGTGGGTGGTGATTTCTGTTGTGATATTTGTGGAAGACCTTATTCCAAAGTTTCAAAGATGACCAGACACAGGAAAGTTCATTATGTTCCAGATAATCCACCAGAATTACAGGCTCTACTTGATAATCCAAAAGTTCAGAATGAACCTCATTTTCTTCAGCAGTCATCATCACTTACCTGTGACTTGTGCGAAAACAGCACTTTAGAGTATGAAAACATTGAGGCTCTTGGTAAACATCGCCATGAAGCCCATAATGTAATGCCCTGTGATTTATGTACAAAGTATTATGGAAGAACATCACACCTTTGGAAACATGTGAATAAAATCCATAAAGGACATCCAGATGTTACTTGCCCCACTTGCCAACGGACATCTGCTTCTAAATCTCATCTAGCAACCCACATTGCTAAACATCACAGAACTGAAGAGATGGGACCACAACCTTCAAAAGCACAAAGAGAAAAGGAATCAAATGGAATTCACACTTGTGAAAAGTGCTCCAAGGTTTTCAGGAAAGAGTCTCTTGTAAGAAAACATATCAAACATTGCAAAGGCCCTAGACCTACCCCAATCCCACTTCCCTCTCCTGTTAATGGTATATATTCATGCGAAAAATGTGATAAGTCATTCAGTGCTAGGAATTTATTATATAAGCATATGAAACACTCTCATATTATATATAAATGCGAGATTTGTGATGCCAAGACTTATTCAAGAACTGAGCTATATCAACATGTTTGTGCTGATCATGCTGACCACCCAGATGTTAAATGTCAAGTAACTGGCTGTGATAAAATTTTACGTTGTAAAGCTGATCTTGAAAGACATAAGAAAAATCATCGTTTAAGCTTTCAACTCCATTTTTGTATATTTTGTGCTGAATTGGTTACAAGTAAGTTTAAATTAAGAAGGCATTTGAAGTCGATTCATAGTAATGAAACTAAATTCTTATGCTTTGTGTGTCTAAAAGCTTTGCCAGATTATTCAGAATTAAAAGCTCACATTGAGAGCAGTCATAAAACGATCTTAGATAGAGGATTTACATGTCAGATTTGTGCTAAATCTTGTTCAAATAAATCAAAATTAATGGAACATATTAAATATCATGGTACAAATTTTTTGCCTTGCAAAATATGTTTAAAAATATTTACTTCAAAAGAAGAATTAGATAACCACGTTGAAAATCACCCAAGTGATAGTGGAGATGAAGAAGAGCAAGTTGAAGTAGATTTAGATGCCAATAGTATAATGGATATAATAGGTGCCTCAAAAACAGAAGTAAATGCTGAAGAGGAAGAAGAAGATAAAGAAGGAGGCAAACGTAAAAGTGAAAATGAGGAAGAAACTCAAAAACCTAAGAAAAAGACTAAACTTGAGATGGAATGTTCTGTTTGTTCTAAAATATTTTATTCTAAAATGGCATTAAGAAGACATATGAAATCTATTCATAATATTAAAAAGGTTTATAATAGGCGTTCTGCAGATAATAAGGAGGACTCGAGTTTGGCGGAAACATCCAAAGGAGATAGCACTATGAATGAAGAAAGTGATAAAAGTGCTTGGGAGTCAACTATTGATTCTGATAAAAATTTTATGCACCAGCTTGGTTTGATGCCTGAGCCTGAGAAATCTAAAACAAGACAGACACGAAAAGTATATATCGATGATATGTCTCCTTGTGATTGTGAACTGTGTGGCAAATCTTGGCCTGCAAAGAAACATTTATGGCAACATTTGATACGATTTCATAAAGAAGAAAGTGGTAGAACTTGTGGTGTTTGCCTTAAGTTATGTCCTGATTATCCATGCCTCAGTGCTCATTTGGTTATTGAGCACTCTAGTATTTTTGATGGGGACGATTCAAGTCTTAATTGTCGTGTTTGTGGAAAATACCATCATAATAAATCAAAACTCTTGAGTCATGTTAGTATCCACATAGGCCATGAAGAAAGAGCTCTTGATCCTGTTCACCACTGTTTAATTTGTAAAGAGGTTTTTCCAGAGTTTTCACAGTTTTGTAACCATATCCGAAATGATCATAATATTGGAGAAGGTGAAACAAAAGAAGAAGTTAATACATCAGAGTCACAAATTAATGATGCATCAGAAAGTGTTAAAACAGAGGGTACAAAATTACCATTTCACACTTGCGAAGTATGCTCTTTGGTGTTTGCTAGTGAAATAGGATTAACCAATCACAAAAGAATTCATGAAAATTCAGATAATTTCAAGTGTGGACAGTGCGGCGAAGTCTTCCAGTCTGCTGAAAACCTTTGCACTCATAAACTTCAAAAACATAAAGGAACAGAATTTGTTTGTGCAGATTGTAAATCTAATTTTTCAACATACACACAGCTCACTGAGCATAATAAACAGTGCAAAATGAAATTAAAAAATCTTGGGGATAATTCTGATGATGAGGAACTGCTATTAGATGATGATATCGATGAGTTAGAAACTTCATACGATGTCAATGACACTATTATGTCATCCGAGTCAGATGATTTAGAAAAGGCAGAGTTCCAAGAAGAGAATGATTTTGAATCACAAGAGTCACTTAGTGATGAAGATGAAAAATCAAATATTTCTGAAATATCTCACAAAGAGCCTAAAGCTGTTGAAGCATTTCTATTTGATAGCAATGTTGAAGTAGTTCAAGTTCATTTAGATGATAATTCAAAATTATAA
- Protein Sequence
- MDNSSLKDYEELCRLCASYDAIKLPIFSERGRARNLRDKITTCLPFDVSEDDLLPKSLCYRCIYNLENFYDFRRGCIDARTRLENVIKEVLKNEPKEEKTVIKIEDTLNDEQIRAESVLIESDGEGDCPNPADFVEACWEERTSVKTESSLTVESDSPHHGSKNGDEEEGAFPCKVCERSFCSKSSLTIHAKFHQDISGGSESNKENYSCFVCDKVFSSKGHLALHSKVHIGETSSPPLSNSSSRSSPANLKLYRCDLCNKTYSMAKHLWGHVSTTHKGHPLVTCSLCQRTFSSISNLEDHKRVKHKDDQLIEEVGESPKLIEDDSGIEKKSEELPSNRRKNSKPRKIERDMNTSESNSTFSNSENTHSATESMQTISSKNTNSQQHNRNAYQIEKTYARTQKQNTIVDSTLSCFMCGERFRGADQLNQHLLEAHAYEGPLDFSNYSRNDCGEDYAESMMEAETVFCCEICIREFNDRGSLWLHLLYSHKNAASKACGICLKICDDTESLVQHVETAHPKSKSDQRRYSCQVCARQHDSRKKLVTHAKIHKLVDAEGNLVDPETVVVQNADFYSDGFIPHPMDDNYLSCEVCFKVFENDSKLLKHKRSAHKDLAGLNNSLNSGAYHFYFACEICGLSHLSRADRWKHMSTTHAGDPNITCEVPECGKVFPTSSIKKEHASHHAAQGQYPNTCEVCGKMWKTRVEYWKHMMGVHPDCLPFICGVCLKVFCNLATLVSHVRETHWPLVGGDFCCDICGRPYSKVSKMTRHRKVHYVPDNPPELQALLDNPKVQNEPHFLQQSSSLTCDLCENSTLEYENIEALGKHRHEAHNVMPCDLCTKYYGRTSHLWKHVNKIHKGHPDVTCPTCQRTSASKSHLATHIAKHHRTEEMGPQPSKAQREKESNGIHTCEKCSKVFRKESLVRKHIKHCKGPRPTPIPLPSPVNGIYSCEKCDKSFSARNLLYKHMKHSHIIYKCEICDAKTYSRTELYQHVCADHADHPDVKCQVTGCDKILRCKADLERHKKNHRLSFQLHFCIFCAELVTSKFKLRRHLKSIHSNETKFLCFVCLKALPDYSELKAHIESSHKTILDRGFTCQICAKSCSNKSKLMEHIKYHGTNFLPCKICLKIFTSKEELDNHVENHPSDSGDEEEQVEVDLDANSIMDIIGASKTEVNAEEEEEDKEGGKRKSENEEETQKPKKKTKLEMECSVCSKIFYSKMALRRHMKSIHNIKKVYNRRSADNKEDSSLAETSKGDSTMNEESDKSAWESTIDSDKNFMHQLGLMPEPEKSKTRQTRKVYIDDMSPCDCELCGKSWPAKKHLWQHLIRFHKEESGRTCGVCLKLCPDYPCLSAHLVIEHSSIFDGDDSSLNCRVCGKYHHNKSKLLSHVSIHIGHEERALDPVHHCLICKEVFPEFSQFCNHIRNDHNIGEGETKEEVNTSESQINDASESVKTEGTKLPFHTCEVCSLVFASEIGLTNHKRIHENSDNFKCGQCGEVFQSAENLCTHKLQKHKGTEFVCADCKSNFSTYTQLTEHNKQCKMKLKNLGDNSDDEELLLDDDIDELETSYDVNDTIMSSESDDLEKAEFQEENDFESQESLSDEDEKSNISEISHKEPKAVEAFLFDSNVEVVQVHLDDNSKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00757494;
- 90% Identity
- -
- 80% Identity
- -