Rped008368.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000004:10505107-10509787[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.022 1.3 9.7 2.2 2 23 27 49 26 49 0.96 2 34 0.00064 0.037 14.6 1.2 1 23 82 105 82 105 0.97 3 34 1.6e-05 0.00092 19.6 2.2 1 23 111 134 111 134 0.96 4 34 0.013 0.74 10.5 1.5 1 23 140 163 140 163 0.95 5 34 0.048 2.8 8.7 2.3 3 23 171 192 169 192 0.93 6 34 0.0033 0.19 12.3 4.2 1 23 198 221 198 221 0.97 7 34 0.0026 0.15 12.7 0.1 1 23 227 250 227 250 0.97 8 34 1.5e-05 0.00087 19.7 0.1 1 23 256 279 256 279 0.97 9 34 0.17 9.9 6.9 0.9 1 23 285 310 285 310 0.93 10 34 0.0028 0.16 12.6 0.5 1 23 316 339 316 339 0.97 11 34 0.0015 0.089 13.4 0.6 1 23 345 368 345 368 0.97 12 34 0.072 4.2 8.1 0.2 1 23 374 397 374 397 0.93 13 34 0.00019 0.011 16.2 0.1 1 23 403 426 403 426 0.95 14 34 0.00017 0.0099 16.4 2.1 1 23 432 455 432 455 0.97 15 34 0.021 1.2 9.8 2.7 2 23 462 484 461 484 0.95 16 34 0.00067 0.039 14.5 0.4 1 23 490 513 490 513 0.95 17 34 0.055 3.2 8.5 0.2 1 23 519 542 519 542 0.93 18 34 0.0023 0.14 12.8 7.3 1 23 548 571 548 571 0.98 19 34 0.00053 0.031 14.8 1.0 1 23 577 600 577 600 0.95 20 34 7.1e-05 0.0041 17.6 0.7 1 23 606 629 606 629 0.95 21 34 0.0037 0.21 12.2 0.2 3 23 637 658 636 658 0.97 22 34 0.0001 0.0059 17.1 3.7 1 23 664 687 664 687 0.97 23 34 0.0018 0.1 13.2 2.1 1 23 717 740 717 740 0.95 24 34 0.00021 0.012 16.1 0.1 1 23 746 769 746 769 0.97 25 34 0.00015 0.0089 16.5 0.1 1 23 775 798 775 798 0.97 26 34 0.097 5.6 7.7 0.3 1 21 804 824 804 827 0.87 27 34 1.1e-05 0.00065 20.1 0.3 1 23 833 856 833 856 0.98 28 34 0.012 0.68 10.6 1.5 1 23 862 885 862 885 0.95 29 34 0.00088 0.051 14.1 0.2 1 21 891 911 891 914 0.90 30 34 8.5e-05 0.0049 17.3 1.7 1 23 920 943 920 943 0.96 31 34 0.0012 0.067 13.8 0.2 1 23 949 972 949 972 0.96 32 34 0.0067 0.39 11.4 2.9 1 23 978 1001 978 1001 0.91 33 34 0.00011 0.0065 16.9 0.2 1 23 1007 1030 1007 1030 0.92 34 34 0.0036 0.21 12.2 5.1 1 23 1036 1058 1036 1059 0.94
Sequence Information
- Coding Sequence
- ATGTTTGATATCAAGAGAGAACATGGTGATGAAGCTGCAGCAGGATTATTCAATATTGGGAGAGTAAGGCAGAATTTAACATGTTACTACTGTGGATACAACTGGAAGAGGCTGAAAGCTTTAACACACCACATAAAAAAAATGCATTCTTGCCAGCTCGGTACTTCAGTGAAAGAACCCAATTACAGAGTTCTTCGGGAAATAGCTAAGAGTAGGAAACTTCAAAAGAGTAAACAGAGGCCGTATCAGTGTCATTTATGCGAATATAGAAGTGCTCAGGCAGGGAATTTGAAAACGCACGTAATGTCAAAGCATTGGAAAATGAAACCTCACAAATGCCCCAAGTGCCCATATCGGACGACTCAGCAAGGCAACTTGAAAACGCACATCAGGGCAAAGCATACTCATGAAAAGCCTTTCAAGTGTAATAAGTGCGAGTTCAGTTCTGCGCAAGCAACCTCTTTAAGGCTCCATTACCTCAACAAACACACATCGGAACGGCCCCATTTATGCCATCAGTGTGATTATTCGACAGCCAACCCTGCCAATTTGAGGTTTCATATATTATCGAAACATTCCTCTGAAAAACCCTTCAAGTGTACTGAATGTGAATATAGTTCAGTGCATGCATGCAATTTAAAGACGCACATTCTTTCGAAGCATTCATTGGATAAGCCGTATAAATGTGAAGCGTGTCCTTACAGCACACCTTATCCTGCCAATCTTAGGACACATGTCCTGTCGAAGCATTCAGGAGAGCGGCCTTTCAAGTGCCCTGAATGTGACTACAGTTCAGCACAAGCGGCCAATCTAAAGACACATATTATTTCGAAACACTCGACTGAAAAGCCTTATTCGTGCACAGTCGAAGACTGCGAATTCAGAACAGCTTTTCGAGGCAACTTGAAGAATCATGTTCTGGCTTGCCATACAGAAGGCAAACCGTACAATTGTTCCGATTGTTCATACAGTGCTGCTCAGCTAGTATCTCTGAAGAGGCATCGTATTACCAAACACTCGACTGAACGGCCATTCAAATGTGCTCATTGTGACTATTCGTCTGTGCTCCTCGGCAACTTGAAAACACATATATTGGTGAGCCATTTGAAGGAGAAAGCGCATGAGTGTACGTTCTGTTCGTACAAAGCTGCACAGGCTGCTACCCTCCGAGCGCATATCATAGCTAAACATACCAAGGAGAAGCCATTTAAATGTGAGTATTGCGATTATTCTGCTGCTCAAGCTGGCAACCTTCGAACGCATGTAAAAGCAATACACACTGGTGAAAAGCCACATCAGTGCTCCGAATGCGACTATAAAACTGTTCACCCTGCCAACCTTAAGACGCATATACTTTCCAATCATTCTCAAGAGAAACCTATTAAATGCGAAGAATGTGATTACTGTTGCGTATATCCGACGACAATGAAAATGCACATTATATCCAAACACACTAAAGAGAAGCCTTATAAATGTTTGTATTGTGACTTTGCTTCAGCTCAAGCTGGCAATCTGAAGAAGCACACGATGGCGAAGCACACAAATGAACGGCCTCACCAATGCCCGTATTGCGAATACAATTCAGCACAGGCAGCAAGCGTCAAGATCCACGTAATGGCTAAGCACACTGATGAGCGGCCTTACCAGTGCCCTCATTGTGATCACAGGACTGCGCATCACGGCAACCTCTCCAATCACATCAAATCCAAACATTCCACAGACAAACCTTATAAATGCGCCGATTGTGATTTTGCGACAGCTCACCGTACGAACCTCAAGACTCACATTCTAGGAAAGCACACTGCAGACAAACCGCACAAATGCAGCGAGTGTGACTATACGACTGCTCAGGCAGGCAATCTCAAGACGCACATTATGGCCAAGCACACCCACGAGAAGCCTAATCTCTGCCCTTACTGCGATTATAAAGCGACCCAAGCAATCAGCCTTAAGACTCACATCCTTTCCAAACACACTGATCAACGCCCTTTTCAGTGTCTCTATTGTGACTATTCTACAGCTCACAGAAGCAATTTAAAAACTCATATTTCGAAGAAACATACAAGTGAAAATGTCTCTATCGAGTGCAATGTCGATTCCCTTTCCCCACGTCAACGAACGTACAATAAGAGTAAAACAGAGAGGTTTCACCAATGCCCTGAGTGTCCTTTTAAAACTCAACACTCTGGAAATCTGAAATCGCATATTATGGCCAGACATAGCAATGAACGGCCATTTAAGTGCACGGAATGTCCTTATGCTTCTGCTCAAGCAGGTAACCTAAAAATGCATATATTGTCTAAGCACACAGACGAGAAACCGTATGCCTGTAGCGATTGCGATTATAAAACTGCATTTCCTGGTAATCTGAAAACGCATATAAACTCAGTTCATAATAATACGAGGCCATATCAGTGCTCGGAGTGCGAATATGCTACAACTCAGGCAACAAGTCTTAAGTTCCACGTCATAGCCCGACACACAGAGGACAAACCGTATAAATGTAGTGAGTGTGACTACAGCAGCGTGCAGCCCGGGAATTTGCGCTCTCACATAATGTCAAAGCATACTAAGGAAAAACCACACGAATGCCCACACTGTACGTACCGAGCGACTCTGCTCAGCACTCTCAAGAACCACATCAATGCAGTCCATACAAAGGAGCGCCTGTTCCAGTGTTCGGAGTGCGAGTACAGCTCGGCTCAGCAGAGCACTCTGCGTGCACACGTTGTCGCCAAACACACATGCGAGAAGCCGTACCAGTGCCCCCACTGCGAGTTTGCATGCGCGCAGTCTGGCAATCTCAAAACGCATATCATGGCGAAGCACACGATGGAACGGCCTTATCAATGCGATCAGTGCGATTACAGTGCAACGCAGGCCGGAACTCTCAAGCTGCACGTACTCTCCAAACACTCCAACGAGAAACCGCACAAATGCCCTCACTGCGACCATAGGACAGCCCACATCGGGAACCTCAAGATCCATATAGTAGCACTCCACTCGAGGAAAAAGCCATACAGGTGTGAGATCTGTGAGTATGAGACAGCACACCCGAGCAACCTCCGGACCCACATGGTCGGCGTCCACATGGAGGACAAACCATACCACTGCCCGCATTGTGATTATAAATCTGCACAACATGCCAACTTGAAATCGCACATAGCAGCACACCACTAA
- Protein Sequence
- MFDIKREHGDEAAAGLFNIGRVRQNLTCYYCGYNWKRLKALTHHIKKMHSCQLGTSVKEPNYRVLREIAKSRKLQKSKQRPYQCHLCEYRSAQAGNLKTHVMSKHWKMKPHKCPKCPYRTTQQGNLKTHIRAKHTHEKPFKCNKCEFSSAQATSLRLHYLNKHTSERPHLCHQCDYSTANPANLRFHILSKHSSEKPFKCTECEYSSVHACNLKTHILSKHSLDKPYKCEACPYSTPYPANLRTHVLSKHSGERPFKCPECDYSSAQAANLKTHIISKHSTEKPYSCTVEDCEFRTAFRGNLKNHVLACHTEGKPYNCSDCSYSAAQLVSLKRHRITKHSTERPFKCAHCDYSSVLLGNLKTHILVSHLKEKAHECTFCSYKAAQAATLRAHIIAKHTKEKPFKCEYCDYSAAQAGNLRTHVKAIHTGEKPHQCSECDYKTVHPANLKTHILSNHSQEKPIKCEECDYCCVYPTTMKMHIISKHTKEKPYKCLYCDFASAQAGNLKKHTMAKHTNERPHQCPYCEYNSAQAASVKIHVMAKHTDERPYQCPHCDHRTAHHGNLSNHIKSKHSTDKPYKCADCDFATAHRTNLKTHILGKHTADKPHKCSECDYTTAQAGNLKTHIMAKHTHEKPNLCPYCDYKATQAISLKTHILSKHTDQRPFQCLYCDYSTAHRSNLKTHISKKHTSENVSIECNVDSLSPRQRTYNKSKTERFHQCPECPFKTQHSGNLKSHIMARHSNERPFKCTECPYASAQAGNLKMHILSKHTDEKPYACSDCDYKTAFPGNLKTHINSVHNNTRPYQCSECEYATTQATSLKFHVIARHTEDKPYKCSECDYSSVQPGNLRSHIMSKHTKEKPHECPHCTYRATLLSTLKNHINAVHTKERLFQCSECEYSSAQQSTLRAHVVAKHTCEKPYQCPHCEFACAQSGNLKTHIMAKHTMERPYQCDQCDYSATQAGTLKLHVLSKHSNEKPHKCPHCDHRTAHIGNLKIHIVALHSRKKPYRCEICEYETAHPSNLRTHMVGVHMEDKPYHCPHCDYKSAQHANLKSHIAAHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00757482;
- 90% Identity
- -
- 80% Identity
- -