Gacu022297.1
Basic Information
- Insect
- Gonocerus acuteangulatus
- Gene Symbol
- -
- Assembly
- GCA_946811585.1
- Location
- CAMPFD010001167.1:319024-331688[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.016 3.2 10.2 1.5 2 23 148 170 147 170 0.96 2 34 0.00022 0.047 16.0 3.6 1 23 203 226 203 226 0.97 3 34 9e-05 0.019 17.2 0.4 1 23 232 255 232 255 0.96 4 34 0.068 14 8.2 4.4 1 23 261 284 261 284 0.95 5 34 0.0047 0.98 11.8 2.1 1 23 290 313 290 313 0.94 6 34 0.002 0.41 13.0 4.4 1 23 319 342 319 342 0.97 7 34 0.0042 0.88 12.0 0.3 1 23 348 371 348 371 0.95 8 34 0.00014 0.029 16.6 0.1 1 23 377 400 377 400 0.96 9 34 1.4 2.8e+02 4.1 0.1 1 23 406 431 406 431 0.88 10 34 0.0041 0.86 12.0 0.4 1 23 437 460 437 460 0.97 11 34 0.0036 0.75 12.2 0.3 1 23 466 489 466 489 0.97 12 34 0.012 2.5 10.5 0.1 1 23 495 518 495 518 0.94 13 34 0.00043 0.089 15.1 0.3 1 23 524 547 524 547 0.95 14 34 0.00015 0.03 16.6 2.1 1 23 553 576 553 576 0.97 15 34 0.014 2.8 10.4 2.1 2 23 583 605 582 605 0.91 16 34 0.00032 0.066 15.5 0.7 1 23 611 634 611 634 0.95 17 34 0.01 2.1 10.8 1.1 1 23 640 663 640 663 0.94 18 34 0.002 0.41 13.0 3.9 1 23 669 692 669 692 0.96 19 34 0.0037 0.76 12.2 1.8 1 23 698 721 698 721 0.95 20 34 0.00019 0.039 16.2 1.1 1 23 727 750 727 750 0.95 21 34 0.0024 0.5 12.7 1.7 2 23 757 779 756 779 0.96 22 34 0.00045 0.094 15.0 4.3 1 23 785 808 785 808 0.97 23 34 0.0012 0.25 13.7 1.3 1 23 840 863 840 863 0.95 24 34 0.00084 0.18 14.2 0.1 1 23 869 892 869 892 0.95 25 34 0.00035 0.073 15.4 0.9 1 23 898 921 898 921 0.97 26 34 0.068 14 8.2 0.7 1 22 927 948 927 950 0.87 27 34 1.1e-05 0.0023 20.1 0.7 1 23 956 979 956 979 0.97 28 34 0.0098 2 10.8 1.1 1 23 985 1008 985 1008 0.95 29 34 5.3e-05 0.011 17.9 0.9 1 23 1014 1037 1014 1037 0.94 30 34 0.00012 0.025 16.9 0.8 1 23 1043 1066 1043 1066 0.96 31 34 0.0013 0.27 13.6 0.9 1 23 1072 1095 1072 1095 0.97 32 34 0.0074 1.5 11.2 2.9 1 23 1101 1124 1101 1124 0.91 33 34 4.1e-05 0.0086 18.3 0.6 1 23 1130 1153 1130 1153 0.96 34 34 0.00011 0.022 17.0 3.7 1 23 1159 1181 1159 1182 0.96
Sequence Information
- Coding Sequence
- atggaCGAGTGCAATCCTGTGTCAACCCCAATGATACCCAGTCTCAAACTCGTGCGAAATTCAGAAAAAGTTCTTTCAGGATACCCTTATCAAAATCTTATAGGGTTACTCCTTTACCTATCAATTGGTGCAACACCAGgTGAATCCATCTGCATCAAGAAAGAGCCAACTGCTCAGCCTGATTCTTCCACTCCACACAATGAAGaagaagaagaaacggAACCTTCCCGGGAGAATTTCATCTcctttaaagaagaaataatagaTGATCTACTCAACTCCACATCTCCCTTTGTTgaaGAAGAGGTCGATAACCGAATCAGTGAATCCCTTAATGGAGTGGCGTCTGTTGAAGCAACAAGGCGagGCTTGGAACCTGATGGAATGGACAATGAGAGAATTGACTCCGAGATCAGATCAAGAAGAGCAAGGAAGATTATCACATGCTACTACTGCGGATATCGTTGGAGTTCATTGAAAGCTTTAACTCACCATATAAAGAAAATGCATTCGTGCCAACTTGGAACATCGGTTAAGGAACCCAATTATCGTGTACTTCGAGAAATAGCAAAGAACAAGAAGCATGTCAGAAGCAAACTGAAGCCATTTCAGTGCCACATGTGTGACTATAGATGCGCTCAAGCGGGTAACTTGAAGACCCACGTAATGTCGAAACATTGGAAGTACAAACCTCACAAGTGTCCCACATGTCCATATCGAGCCTCGCAACCAGGGAACCTCAAGATACACATCAGAGCCAAACACACTCTCGAAAAACCGTTCAAGTGTTCGCAGTGCAATTTCAGCTGTGTTCAGGGCTCGTCGTTGAAGTCACATTTCCTCTCCAAGCACACTTTGCAACGCCCACATGCTTGCAATGAATGCGATTATTCTACTGCCAATCCGAGTAATTTAAGATGCCATATACTATCAAAACATTCATCTGAAAAACCTTTCAAATGTACTGAATGTGAGTACAGTTCAGTTCATGCTTGCAACTTGAGGACTCATATGTTGTCAAGGCATTCTTTAGATAAGCCTTATAAATGTGAGGAATGTACGTACAGTACTCCATATGTCGCTAACTTAAAGACGCATGTCATGGCAAAGCATTCCCAAGAAAGACCCTTTAAATGTCCGAATTGTGAATACAGTTCAGCACAAGCTGCTAACTTGAAGACACACATCATGGCCAAACATTCTACAGAGAAACCGTTTGCTTGCCAAGTCGAAGGCTGTGAATTTAAAACAGCTTTTCGTGGAAACCTGAAGAATCATGCTTTGGCTTCACATTCCGAAGGAAAACCATATAACTGTACTGAATGCCCGTACAGTGCTGTGCAAATGGTATCCTTGAAGAGGCATCGGATTACTAAACATTCTACGGAGAAGCCGTTCAAGTGTGCACATTGCGACTACGCTTCAGTGCTCCTCGGCAACTTGAAGACACATATATTGGTGAGTCACTTGAAAGAAAAAGCCTTTGAATGCACATTTTGTGATTATAGAGCTGCGCAAGCAGCAACATTGAGGTCCCACATACTCGCGAGGCATACAAACGAGAAACCATACCGCTGTGAATTCTGTGACTATTCGTCAGCACAAGCAGGTAATCTACGTACCCATGTCAAGGCTAGACACACTGACGAGAAACCTCACCAATGTACCGAGTGCGATTACAGAACTGTTCATCCCGCCAACCTCAAGACTCACATCTTATCGAACCACTCCGAAGAAAGGCCAATGAAATGCGAAGAGTGTGACTACTGCTGTGTATATCCAACGTCTTTGAAAATGCACGTAATTGCGAAGCACACTAATGAGAAGCCCTATAAATGTCTGTATTGCGACTTTGCATCTTCTCAAGCGGGCAATTTGAAGAAACATACTATGGCAAAACATACGAACGAACGACCTCACCAGTGTCCTTATTGCGAGTACTGCTCAGCTCAGGCAGCAAGTGTAAAGACCCACATTTTGGCTAGGCACACCGAGGAAAAGCCATACAAATGCCCTCATTGTGAGCACAGAACTGCACATCAAGGCAATCTCAGTTTACACATAAAAGCGAGGCATTCGTCAGACAAACCATACAAATGCTCTGAATGTGCCTTCTCGACAGCCCACCGGACGAACTTAAAAACGCATATATTGGGAAAGCACACAGCTGACAAGCCCTTCAAATGCAGCCATTGTGATTACACATCAGCACAAGCAGGGAATCTTAAAACGCATGTAATGGCAAAGCATACCCACGAAAAGCCGAATAAATGCCCCCATTGTGACTATAGATCTACGCAAGTTGTTAGCCTCAAGACTCACATTCTATCCAAGCATACCGAAGAGCGTCCTTATCAGTGTCTTTACTGTAATTTTTCTACTGCACACAGAAGTAATTTGAAAACTCACATCTCAAAAAAACATACGAGTGAGAGCGTGTCTGTTGAATGCAGCGTGGATCCTCTCTCATCAAGCATGGACCCTACGAAGATTGTTGAAAGGAAGAAAAACAGGATATACCAATGCCCACAGTGCCAATTTAAAACTCCCCATTCTGGAAACCTGAAAACCCATGTGATGGCTAGACATAGCAACGAAAGACCTTTCAAGTGCTCCGAGTGTCCGTATGCTTCTGCTCAGGCTGGGAATCTCAAGCTCCATATAGTATCGAAGCATACCAGCGAAAAGCCCTATTCATGTGATCATTGCGAGTACCGAACTGCCTTTCCAGGTAATTTGAAGACACATATAAACTCTGTGCACGTAAATGTGAGGCCGTTCCAGTGTTCCGAGTGCGAATATTCAACAACCCAAGCCACCAGCCTCAAATTCCATGTGCTTGCAAAACATACCGACGAAAAACCTTTCAAATGTACTTACTGCGATTACAGCACTGTACAGGCTGGCAACCTTCGCTCGCATATAATGTCTAAACACACAAAGGAGAAACCTCACGAATGCCCACACTGTGAGTATCGAGCCACACTACTCAGCACTCTCAAGAACCACATTAATGCAGTCCACACAAAGGAAAAGCTGTTCCAATGCTCGGAGTGCGACTATTGCTCTGCGCAACAAAGCTCTCTCAGAGCTCACATTATTGCCAAACACACCTGCGAGAAGCCTTACCAATGCCCTCACTGCACATTTGTCAGCGCTCAGTCTGGCAACCTCAAAACGCACATAATGGCCAAGCATACTCTCGAAAGGCCTCATCAGTGCGACCAATGCGATTACCGTGCGACCCAGGCCGGTACACTCAAGTTACACATTCTCACCAAACACAGTAACGAGAAACCTCACAAGTGTCCTCACTGCGATCATAGGACTGCCCACATTGGAAACTTGAAGATACACATTGTCGCTCTCCACACTAGGAAGAGACCTTACAAATGCGAGATCTGTGAATATGAGACTGCGCACCCAAGCAATCTCCGAACGCACATGGTGAAAGTTCACTTGGAAAGCAAGCCTTACCATTGCCCAGACTGCGACTTCAAATGTGAGCAACCTGCGAATCTAAAGACTCATATTGCAACACACCATTAA
- Protein Sequence
- MDECNPVSTPMIPSLKLVRNSEKVLSGYPYQNLIGLLLYLSIGATPGESICIKKEPTAQPDSSTPHNEEEEETEPSRENFISFKEEIIDDLLNSTSPFVEEEVDNRISESLNGVASVEATRRGLEPDGMDNERIDSEIRSRRARKIITCYYCGYRWSSLKALTHHIKKMHSCQLGTSVKEPNYRVLREIAKNKKHVRSKLKPFQCHMCDYRCAQAGNLKTHVMSKHWKYKPHKCPTCPYRASQPGNLKIHIRAKHTLEKPFKCSQCNFSCVQGSSLKSHFLSKHTLQRPHACNECDYSTANPSNLRCHILSKHSSEKPFKCTECEYSSVHACNLRTHMLSRHSLDKPYKCEECTYSTPYVANLKTHVMAKHSQERPFKCPNCEYSSAQAANLKTHIMAKHSTEKPFACQVEGCEFKTAFRGNLKNHALASHSEGKPYNCTECPYSAVQMVSLKRHRITKHSTEKPFKCAHCDYASVLLGNLKTHILVSHLKEKAFECTFCDYRAAQAATLRSHILARHTNEKPYRCEFCDYSSAQAGNLRTHVKARHTDEKPHQCTECDYRTVHPANLKTHILSNHSEERPMKCEECDYCCVYPTSLKMHVIAKHTNEKPYKCLYCDFASSQAGNLKKHTMAKHTNERPHQCPYCEYCSAQAASVKTHILARHTEEKPYKCPHCEHRTAHQGNLSLHIKARHSSDKPYKCSECAFSTAHRTNLKTHILGKHTADKPFKCSHCDYTSAQAGNLKTHVMAKHTHEKPNKCPHCDYRSTQVVSLKTHILSKHTEERPYQCLYCNFSTAHRSNLKTHISKKHTSESVSVECSVDPLSSSMDPTKIVERKKNRIYQCPQCQFKTPHSGNLKTHVMARHSNERPFKCSECPYASAQAGNLKLHIVSKHTSEKPYSCDHCEYRTAFPGNLKTHINSVHVNVRPFQCSECEYSTTQATSLKFHVLAKHTDEKPFKCTYCDYSTVQAGNLRSHIMSKHTKEKPHECPHCEYRATLLSTLKNHINAVHTKEKLFQCSECDYCSAQQSSLRAHIIAKHTCEKPYQCPHCTFVSAQSGNLKTHIMAKHTLERPHQCDQCDYRATQAGTLKLHILTKHSNEKPHKCPHCDHRTAHIGNLKIHIVALHTRKRPYKCEICEYETAHPSNLRTHMVKVHLESKPYHCPDCDFKCEQPANLKTHIATHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01309624;
- 90% Identity
- -
- 80% Identity
- -