Rped016801.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- egg
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000001:805359-807275[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-10 9.7e-07 28.4 0.0 32 73 240 279 219 282 0.83 2 2 3.1 1.2e+04 -3.9 0.0 48 62 561 574 557 582 0.75
Sequence Information
- Coding Sequence
- ATGGGCCGCAAACAGAGAAAAAAGAAAAAATGTTATACGGCTAACGAGGTGAAAGAGAAAGTTAATGAAATGTTCCCCGCTTTGAACGAAGATACTATTGGAAATAGCAATTCTGCCATATTGACTAAGGAGATAAGAGACTGTACCCTAGGTAAATTTATTGCAATATTCACTAAATTAAAAGGTATGTTACGTCATACAATGAACAGGTTCTATGAGGCCATAAAACCTATAGGAAAGGAGCCACCACCTTTTCATGTACCCTATGAATATACTTGCCATCAAGACGAAGTAGCAGTTCCTGAAGATGCTTGTGTCATAAATGTTATTATAAGCAGTGATTTAGTCCCAAACAATCGTTCTGAACCTGTTGCAAATGAGAGTAGAGCTGTGCTTGATGACAAAGACGGAGGAGAATGCGAGTTGGACTTGATGGCGAGGCTGCGGAGATCGCCAAGACTCCATCAGCTCTCACATCAACCTACAAAAGCAGCTGAATGCAAGCTTAGTACGCGTCAACAAATCGGTGGATCGATTGAAGAACGAATGCCGACGAAAGCACTCCAACCGAAAATGATTCATCTTGCGACAGATTTGAAGAAATGCAATAAATCATGTATTAGTTGGATTGAAACAAAAGATGAAGATACAATAGGAGTAAGTCCTCTCGCTACACCAGTTCTCTATGGTTTTGTAAGGGGGGTGTTTCATCCTAACAACGTCTATTATATTGCACCCTGTGGTCGAATATTGAATAACATACGACAAGTGTTGAGGTATTTGAGAAGGACTAGCCTACAAATCAGCATAGATTTATTCGATTTTGACTATCGGGTGAACATTTATAACGAATTCGTAGTGAATGATGAAGAAATAATACTGAGGGATATATCACTTGGAGCAGAAAAACATGGTGTGCAATGTTCGAATGTATTTACGCAAGAGAGGCCTCCAAACGTGAAATACATAACTCAGAGACAAGGAAGTGACCTGTGCCGTTTCAAACTCAATTGCGACCCTCAATTTTTAACTGGCTGTGATTGTATTGACAATTGTCAAGACAAGACAAAATGTGCCTGTTGGCAGCTAACTATGGCTGAAAATGTGAGGAAAATTAGAGGGAAGAACAATTGGCAGAACAAGTCGATAGGATACAGCTACAAACGCCTTACTAACGTAGTTGATAATGGCATATATGAATGTAACGAGAGGTGTAAATGTTGTGTGAAAACGTGTTTAAATAGAGTTGTTCAACACCCATTAAAACAAAAACTTCATTTGGCGATGACAGAAAACAAGGGGTGGGGCTTGAGGTGTGTCAACGACATCCCCGCCGGATCTTTTATTTGTGTTTATCTGGGCGAAATAATGAATGAAAGCTTTGCAGAGGTTTATGGACAAACGGAGGGCTCTGAATATTCCGCTCAACTCGATTTGATTGAGGTGGCTGAAGAGAAAAAAGAAGGCTATGAGGAATATGCCGCCCCTTCAGAACATTTGAATGATGACATGCAAAGTAAGAATAGCAGCCTCCCCCTAGGTGGCGATTCCCCAAGCTCTTCTCTGAGAGCTGTGGCCGAGGTAGATAATGCCCCACCTTCTAGGCCCAGTCTCCGTACTTACTATGGCAAAGATGAAGAAATGGACAAGATCTTCATAATGGATGCCAAACGAATTGGAAACATTGCTCGCTACATAAATCACTCATGTGACCCCAACTTGTTTGTTCAAAGCGTATTTGTCGACACACATGACTTGCGATTCCCTTGGGTGGGATTATTTTCCAAAAAATACATCGCAGCAGGCGAAGAGCTTACTTGGAACTACGCCTACGAAAATCTACCTGGTCAAGAGAGAACGTTCCAATGTAGATGCGAAGCTAAAAACTGTGTCACAGCTATGCTCCCCACTGTATAA
- Protein Sequence
- MGRKQRKKKKCYTANEVKEKVNEMFPALNEDTIGNSNSAILTKEIRDCTLGKFIAIFTKLKGMLRHTMNRFYEAIKPIGKEPPPFHVPYEYTCHQDEVAVPEDACVINVIISSDLVPNNRSEPVANESRAVLDDKDGGECELDLMARLRRSPRLHQLSHQPTKAAECKLSTRQQIGGSIEERMPTKALQPKMIHLATDLKKCNKSCISWIETKDEDTIGVSPLATPVLYGFVRGVFHPNNVYYIAPCGRILNNIRQVLRYLRRTSLQISIDLFDFDYRVNIYNEFVVNDEEIILRDISLGAEKHGVQCSNVFTQERPPNVKYITQRQGSDLCRFKLNCDPQFLTGCDCIDNCQDKTKCACWQLTMAENVRKIRGKNNWQNKSIGYSYKRLTNVVDNGIYECNERCKCCVKTCLNRVVQHPLKQKLHLAMTENKGWGLRCVNDIPAGSFICVYLGEIMNESFAEVYGQTEGSEYSAQLDLIEVAEEKKEGYEEYAAPSEHLNDDMQSKNSSLPLGGDSPSSSLRAVAEVDNAPPSRPSLRTYYGKDEEMDKIFIMDAKRIGNIARYINHSCDPNLFVQSVFVDTHDLRFPWVGLFSKKYIAAGEELTWNYAYENLPGQERTFQCRCEAKNCVTAMLPTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -