Rped015797.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- bab2
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000006:99186131-99232146[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.8e-16 8.4e-14 51.1 0.0 2 40 354 393 353 396 0.90 2 4 2.8e-12 8.2e-10 38.3 0.1 1 39 407 445 407 448 0.95 3 4 1e-15 3.1e-13 49.3 0.0 2 45 463 507 462 507 0.98 4 4 1.5e-15 4.3e-13 48.8 0.0 2 40 515 554 514 557 0.95
Sequence Information
- Coding Sequence
- ATGGCGGGGCAACACTACTGCCTGCGTTGGAATAATTATCAATCTAACATGACATCAGTTTTTCATCATCTACTCAAGACTCAGGCTTTTGTTGATGTCACACTTGCTTGCAATGATCAGTCTCTCAAAGCTCACAAGGTTGTACTTTCAGCATGTTCATCTTATTTTCAAAAACTTCTTCTGGAAAATCCTTGTAAACATCCAACAATAATAATGCCACAGGACGTATGCTTTACAGACCTTAAATTTATTATAGAATTTGTCTATAAAGGTGAAATAGATGTTTCTCAAGCACAGTTGCAGTCTGTACTAAAAACTGCAGATCAGCTTAAGATCAAGGGGCTTTGTGAGGTTCCTGAGGGAAAAGAGGGTGCTGAGGTAACTCCTTTACCACATCGGAGGACTTTCTCAAGAGTTAGGCAGAGGAGGCTAGCCAAAAGGAGATTGCAGTATAGACAACGTCTTGCTCGCCAAGAAGCTAATGTCTCTATTCCACAGGAGTCTACCTTATCTGATAATCCAGTTGTATATAATTCATCACTTCCAGAGGCGACAGCAAACACTAATGAAGTTGGTACCTGTACAGAAGAAAATAAAGAAATGGTTATTGTTGGTGAAACCCCTCTTGTAATGACCAATCCTCCACCAGAGTTGAATTCACATCAAGTTTCTTCTCAGGTTGTTGCTGAGGGCAATGAACGTGAAATTGGAGAGCCAAGTGCACCTACTGCTACGCTTGTTAGTGGTCTTGAATTACCTCAAGAAGCAACCCACCGTGATATTGCAGTCGATGCAACTGACCTTGGCGTTGAAGTGGATGATGATGATAACGTGAAGGTTAAATTTGAAACCTTGAGAGCTATCGATCAGAATGACCCTATGGATATGGATCAGCATATGCAAGATAGAACAGTTGCCTCTGTTAGTGAAGATGGTATGCACACAATGATGATCACCCCCGAACTGCTTGGTCTTATTCCTTCCTCCCAGTCAGATGGTAGTGAAACAAGTGGAATGGGTAAAAACAGTATAAATGGTGGAGGTGGTAAATCTTGGAGACAAGAGGACATGGATGCAGCCCTAGAAGCTCTTCGAAATGGATCTATGTCCCTTAGCAGAGCATCATCAATCTATGGAATTCCTTCTACAACACTTTGGCAGCGCGCCCACAGACTTGGTATTGAAACTCCAAAGAAAGATGGCCCATTAAAAACTTGGACTGAAGATAACTTAAATGTTGCACTTGATGCTCTAAGAACTGGATCAATTTCTGCGAATAAAGCCAGTAAAGCTTATGGAATCCCCAGCAGTACTTTATATAAAATAGCCCGTAGAGAGGGAATTCGGCTTGCTGCTCCATTTAATGCTGCACCTACATCTTGGGCACCAGAAGACCTTGAACGTGCTTTGGAGTCCATCAGGTCAGGACAGTCAACGGTACAAAAAGCTGCTGCAGAATTTGGGATACCCTCTGGTACATTATATGGACGTTGTAAAAGAGAAGGAATTGAATTGTCTCGAGCTAATCCTACTCCTTGGTCAGAAGCTGCTATGAATCAAGCATTGGATGCTGTCAGAATTGGGCAAATGAGCATTAACCAAGCAGCTATTCACTTCAATTTGCCATATTCATCATTGTACGGAAGGTTTAAAAGGGGGAAGCATGATGGTACTAACGGTGTTGAAGAGGGAGGAGGTAATGGCGGGGGAGGACAGCTTGAAGCAAGTACAACTACTGAGGCAGCACCAAATGACATGTTATCAACTAATGGAACTCCCCAGCCTCAAATCATGCTTGTCCAATATCAACAGCCAATCCATATGTATCAGCCGACCTGA
- Protein Sequence
- MAGQHYCLRWNNYQSNMTSVFHHLLKTQAFVDVTLACNDQSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCFTDLKFIIEFVYKGEIDVSQAQLQSVLKTADQLKIKGLCEVPEGKEGAEVTPLPHRRTFSRVRQRRLAKRRLQYRQRLARQEANVSIPQESTLSDNPVVYNSSLPEATANTNEVGTCTEENKEMVIVGETPLVMTNPPPELNSHQVSSQVVAEGNEREIGEPSAPTATLVSGLELPQEATHRDIAVDATDLGVEVDDDDNVKVKFETLRAIDQNDPMDMDQHMQDRTVASVSEDGMHTMMITPELLGLIPSSQSDGSETSGMGKNSINGGGGKSWRQEDMDAALEALRNGSMSLSRASSIYGIPSTTLWQRAHRLGIETPKKDGPLKTWTEDNLNVALDALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWAPEDLERALESIRSGQSTVQKAAAEFGIPSGTLYGRCKREGIELSRANPTPWSEAAMNQALDAVRIGQMSINQAAIHFNLPYSSLYGRFKRGKHDGTNGVEEGGGNGGGGQLEASTTTEAAPNDMLSTNGTPQPQIMLVQYQQPIHMYQPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01095742;
- 90% Identity
- iTF_01309542;
- 80% Identity
- iTF_01309542;