Basic Information

Insect: Ricinus marginatus
Gene Symbol: stc
Assembly: GCA_028565995.1
Location: JAOWBB010006747.1:1199-6734[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 3 3.6e+04 -4.2 1.6 15 19 398 402 397 402 0.81

2 13 0.39 4.7e+03 -1.3 2.1 4 10 431 437 429 446 0.83

3 13 1.3e-05 0.16 13.0 15.7 4 19 447 462 437 462 0.91

4 13 0.051 6.1e+02 1.5 10.4 3 19 500 516 492 516 0.84

5 13 1.2e-08 0.00015 22.7 10.2 1 18 556 573 556 574 0.97

6 13 2.2 2.6e+04 -3.7 0.7 5 10 607 612 607 612 0.92

7 13 7e-07 0.0084 17.1 12.1 1 19 618 640 618 640 0.89

8 13 0.015 1.7e+02 3.3 12.4 1 11 680 690 680 702 0.91

9 13 6.6e-08 0.00079 20.4 12.7 1 19 707 725 707 725 0.97

10 13 3 3.6e+04 -12.5 18.9 3 19 761 782 754 782 0.81

11 13 2.7e-06 0.032 15.2 9.2 1 16 818 833 818 844 0.86

12 13 2.3e-05 0.27 12.3 16.6 1 19 850 870 850 870 0.94

13 13 0.74 8.9e+03 -2.2 0.1 8 12 886 890 885 890 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	3	3.6e+04	-4.2	1.6	15	19	398	402	397	402	0.81
2	13	0.39	4.7e+03	-1.3	2.1	4	10	431	437	429	446	0.83
3	13	1.3e-05	0.16	13.0	15.7	4	19	447	462	437	462	0.91
4	13	0.051	6.1e+02	1.5	10.4	3	19	500	516	492	516	0.84
5	13	1.2e-08	0.00015	22.7	10.2	1	18	556	573	556	574	0.97
6	13	2.2	2.6e+04	-3.7	0.7	5	10	607	612	607	612	0.92
7	13	7e-07	0.0084	17.1	12.1	1	19	618	640	618	640	0.89
8	13	0.015	1.7e+02	3.3	12.4	1	11	680	690	680	702	0.91
9	13	6.6e-08	0.00079	20.4	12.7	1	19	707	725	707	725	0.97
10	13	3	3.6e+04	-12.5	18.9	3	19	761	782	754	782	0.81
11	13	2.7e-06	0.032	15.2	9.2	1	16	818	833	818	844	0.86
12	13	2.3e-05	0.27	12.3	16.6	1	19	850	870	850	870	0.94
13	13	0.74	8.9e+03	-2.2	0.1	8	12	886	890	885	890	0.81

Sequence Information

Coding Sequence: ATGGCTAAtatggaagaaaagaaagaaaatctcgACGACATCGTAGCAAGGTCGAAGTTGGTAGCTACAGCTGGGGAATTCATTCctaaatttcttcttaaatctgaaaataatgaatttcctGATTCTAATGCATGTGGTATGCCTACATTTGATAatcaaatgtttattaataaacaagaTGAAGCTTCCAGCCAAAATTATGACAGTGGGTTTGTTGGAATAAGTAGTGAATTGAGTACTGATAATGGTTACGAGCGACATATTGACATGCGTAAAGGTGTTGTTGAAGAAAACAATAGTTTTACTGAAATGCCCCATTCGTCAAATTGGTATTTAGAGACGAATTCTAATAACTGGATTGCAAGGGAAAATGTAGATATTCGAGAAAAAACTCAAAGTTCTTCTTTTTGGACGAATAAAGGACAGAgctattcaaaatataaaagtaataaaagcaattattcTTGGAAGCAAGTAGATAGAAAATTTGATCACAATTACGACGAGGAACAACGAAATGGAAGAGAAAGTTTCCAATCtagaaatgatgaaaattatagaaGTAATGAATTTCAGCATATGGTGTATCTGAACAACTTTAGTATTGCATCCAACAGATTTAAACCGAATTACGGtgtttatgataaattttctgcaaatgTAAGATCTAATACAAGGAATGGTACTTCTTATCATCGAAATCGAGGTTGGAGTAGCGTTCCATACTCTGAAAGCCGTACATGTGCAGAAGTTGACAGATCTTCATTTGGTGATAGAGAATACAAGAATCGTAACGGATCTAAGACTAATAATGGAGAATCAGTAGAAAACTCAGATTTGAACTTTAATGTTGAAGAATTATTGATGAATAGGAAAAAGTCTGCTTTAGGTTCAAAAAGAGTGggaaacaaattgaaaactaaCGAAGAGCAGcttaggaaagaaaatttaacgaaaagaagttcgaatttttcaaagaagaaAGATGATAAGGATAAAAGTAGTAAAATCAATCAAAGAGAACGTTTGGTCGATCTTTTAACTCGTGGTGTGCTTGAATGTTTAGTTTGCTGTGAACAAGTACATCAGAATGCTCCAGTATGGAGCTGTAGTAATTGCTATCATGTCCTGCATTTAAGATGTATTGTAAAGTGGGCAAAATCATCGAAAAGTGATTTTGGGTGGAGATGCCCTGCATGTCAGAATATCACAAGGCAAGTGCCTTATGGTTATTATTGCTTTTGCGGTAAGGTTCGTGATCCAGAATGGAACAGAGTTGATTGCCCTCACTCATGCGGGCAAATCTGTGGAAAAACTCACAAAAAAAGCTGCCctcataaatgtatattattgtGTCATCCTGGTCCTTGTCCTCAATGTACAGCCACAGTTATTAAATCTTGTGGATGCAAAAAAACCGAGAAATCAGTTCAGTGCTTCAATTCGGACGTTGTAACTTGCAGCACTATTTgtggaaaaactttaaattgcaAGATGCACAAGTGCCTTCAAAATTGTCACATGGATGAATGTGCTGATTGCAAAGAAATCATTCATCAagtcTGTTATTGTGGTAAAGAATCAAGAGGTATTAATTGCACGAAAGATACATTAGGTGttgataaatattcatgtgGAAAAATTTGTGGATTACAATTGTCTTGTGGAAACCATTTTTGTGACTCAATCTGCCACGAAGgaGAATGTCAAAAGTGTAATTTATTGCCCGAAATGGTTCTTTTTTGTCCTTGcggaaaatctgaaattaagtCTTTAACCAATGTGGAAAGAACAAAGTGCACTGATCCTATTCCAACATGTGAATTGATATGTGGCAAAAAACTAATTTGTGGACAGCCTGAAAATCGACATACTTGTGAAAGCAAATGTCACGAAGGATTCTGTCCTATTTGTCCTCTGGAAACAGTCGTGAAATGTCGTTGTGGTCATATGGATAAAATGCTGCCTTGTTCCGAACTGTTAATTGGAGCAGATGATGCAAGATGCGTTAAAAGATGTACAAAGAGACGTAGCTGTGGAAAACATAAATGTAACCAAACTTGTTGTATTGATGTTGATCATATTTGCCCTCTTCCATGCAATCGTACGTTACAATGTTCTCTGCATCGATGCGAAGAAACGTGTCATCGTGGTCATTGCCGACCGTGTTGGAGAGCCAGTTTTGAAGAATTATATTGCGAATGCGGGGCCGAAGTGATTTATCCACCGGTACCTTGCGGGACAAGGAGACCTCCCTGTTCAAAACCCTGTTCAAGGAGACATAATTGTGAACATCCACCTACTCATAATTGTCATAGTTCTAATCAATGCCCTCCTTGCACTGtgttgacaaaaaaatattgccatGGTCGTCACGagtTAAGGAAAGCTGTACCATGTCATCAAGATACGTTTTCATGTGGGTTACCCTGTAATAAGGAATTAAATTGTGGAAAACATAAATGCATTTTAGCTTGTCATGAAGGGTTATGTTTGAAAGAAGGTCAGTCTTGCATACAACCCTGTAAAGTACCAAGACCGGTATGTGGACATCCCTGTGGTGCACCTTGCCATGAAGGTCCTTGTCCTTCGGATTTACCTTGTAAAGAAATGgttaGAGTCACATGCGAATGTGGCCATAGATACACTACTCGACTTTGTCATGATAATGCCAAAGAATATCATCGTATAGCTACTGCACAACTAGCTTCTAAAATGGCCGATTTGCAAGCTGGTCAAACCATAGACTTAGACGACGTCATAAAAGATTCCAGaaaactttcatataaaacgtTAGAATGCAATGATGAGTGTAAGTTGATAGAGAGAAATCGTAGATTGGCAATAGCTCTCCAAATTAGGAACCCCGATCTTAGTGCTAAATTAACACCACGATATTCAGAATTTATGAGACACTGGGCTAAAAAAGATGCAAGGTTTTGTCAAATGGTACATGATAAATTAACTGATTTGGTTCAGCTGGCAAAACAGtCTAAGCAAAAGTCCagaagtttttcatttgatcCAATGAATCGAGAAAAAAGGCAGTTTGTGCATGAATATTGTGAACATTTTGGTTGTAAGTCTGTGGCTTATGATCCTGAACCAAAGCGTAATGTTGTAGCAACTGCATTAAAAGAACAGTCATGGTTGCCCAGCATGTCTTTGCTTGAGGTTATACAAAGAGAAAGTTGGCCTAGAAAAGTTCCCGCACctgtaaatgttaaaatgtcgGCTTTGCCTAAAGCTTCTCAGAGgaCAATGGAAGTTTTACCTATCAGAGCTTCTAAAAATCAGACTGCAGTAAACAATGAGAACAGTTCCAGTAATCAATCAACATCACAAATAGATTATTTTGATTGGCAGCCTACTAATTCctga
Protein Sequence: MANMEEKKENLDDIVARSKLVATAGEFIPKFLLKSENNEFPDSNACGMPTFDNQMFINKQDEASSQNYDSGFVGISSELSTDNGYERHIDMRKGVVEENNSFTEMPHSSNWYLETNSNNWIARENVDIREKTQSSSFWTNKGQSYSKYKSNKSNYSWKQVDRKFDHNYDEEQRNGRESFQSRNDENYRSNEFQHMVYLNNFSIASNRFKPNYGVYDKFSANVRSNTRNGTSYHRNRGWSSVPYSESRTCAEVDRSSFGDREYKNRNGSKTNNGESVENSDLNFNVEELLMNRKKSALGSKRVGNKLKTNEEQLRKENLTKRSSNFSKKKDDKDKSSKINQRERLVDLLTRGVLECLVCCEQVHQNAPVWSCSNCYHVLHLRCIVKWAKSSKSDFGWRCPACQNITRQVPYGYYCFCGKVRDPEWNRVDCPHSCGQICGKTHKKSCPHKCILLCHPGPCPQCTATVIKSCGCKKTEKSVQCFNSDVVTCSTICGKTLNCKMHKCLQNCHMDECADCKEIIHQVCYCGKESRGINCTKDTLGVDKYSCGKICGLQLSCGNHFCDSICHEGECQKCNLLPEMVLFCPCGKSEIKSLTNVERTKCTDPIPTCELICGKKLICGQPENRHTCESKCHEGFCPICPLETVVKCRCGHMDKMLPCSELLIGADDARCVKRCTKRRSCGKHKCNQTCCIDVDHICPLPCNRTLQCSLHRCEETCHRGHCRPCWRASFEELYCECGAEVIYPPVPCGTRRPPCSKPCSRRHNCEHPPTHNCHSSNQCPPCTVLTKKYCHGRHELRKAVPCHQDTFSCGLPCNKELNCGKHKCILACHEGLCLKEGQSCIQPCKVPRPVCGHPCGAPCHEGPCPSDLPCKEMVRVTCECGHRYTTRLCHDNAKEYHRIATAQLASKMADLQAGQTIDLDDVIKDSRKLSYKTLECNDECKLIERNRRLAIALQIRNPDLSAKLTPRYSEFMRHWAKKDARFCQMVHDKLTDLVQLAKQSKQKSRSFSFDPMNREKRQFVHEYCEHFGCKSVAYDPEPKRNVVATALKEQSWLPSMSLLEVIQRESWPRKVPAPVNVKMSALPKASQRTMEVLPIRASKNQTAVNNENSSSNQSTSQIDYFDWQPTNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01308375;
90% Identity: iTF_01308375;
80% Identity: iTF_01308375;