Rmar007725.1
Basic Information
- Insect
- Ricinus marginatus
- Gene Symbol
- -
- Assembly
- GCA_028565995.1
- Location
- JAOWBB010000012.1:767421-770605[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0099 1.7 10.2 0.1 1 23 307 329 307 329 0.98 2 13 9 1.5e+03 0.9 0.0 13 23 409 419 398 419 0.85 3 13 1.6 2.8e+02 3.3 1.4 2 22 429 449 428 449 0.93 4 13 0.32 54 5.5 2.5 1 17 454 470 454 476 0.85 5 13 0.85 1.4e+02 4.1 0.6 3 17 483 497 481 504 0.78 6 13 0.00021 0.036 15.5 2.7 1 23 512 534 512 534 0.98 7 13 0.00048 0.082 14.3 3.3 1 20 540 559 540 562 0.93 8 13 0.0067 1.1 10.8 2.8 2 23 569 591 568 591 0.95 9 13 0.54 91 4.8 0.1 2 15 602 615 601 617 0.91 10 13 0.00016 0.027 15.9 6.2 1 23 660 682 660 682 0.98 11 13 0.00013 0.023 16.1 2.8 1 23 691 713 691 713 0.99 12 13 0.044 7.6 8.2 0.2 2 20 731 749 730 751 0.92 13 13 0.0016 0.27 12.7 2.1 1 23 790 812 790 812 0.98
Sequence Information
- Coding Sequence
- ATGACAACTTTaagttcgGCAGATATAACCGGTGAATTTATAAGTAATGCATTAGGCTCAGATATGTCTGGTTTACCAGAAGAAAACTTAAATCCTTTAAGCAATGAAAGAATTACAAATTTGCAGATTGTTGGAAATGTCCAGGACCAACTCAAGCATGCAAGCAATATCTCTGTTATGCAAATTCAAgaagCTAATCTCTCACATGATAGTGAGTTGCAgaatattgatgaaaaaagattaacaaatatttatataacattaccattaaattcaaacattaaatattcaatgaattatatttgtcGGCTTTGTGCAGCAGTCATTGATGGTAACTCagctattaatatattttctacagatcactttcaagaaaatttagcttgcaagataaataaatatttacctgtTATAgtTTATGAGGCAGATCCTTTTCCAAAGACTGTATGCAGACCTTGTGTTACTAAACTCAATCAATTCCATGATTTGGCAGAGAAATGTGTGCTAGTGGAGGAACAATTACGTCAAACCTATGTATTTGATGGAAGatatttggatgaattaaacaaaaagatcCAAAAATCGGATTTAGAGCTTTTGAAGCATGAATCAGACAATTCCGATCACTTATATTCAATGACCGATTTTCAGTACCTGGAAAATTTAGATGTAAGCGAAGGTTCCAATTCCAcatgtaaaaaggaaaaaagagaaggcGAAAATATCGTGGAGAGCcttaaatcaattaaagaaAACGTATCTGAATTTAAATCGGAAGGAATGAATTGCTCGATTGACAAAGTTAATGTGGATCGTCCGGatgaaataatcaaatgtaaattttgtgaggaaaatttgaatgagaTGAAAGATTGCTTTGATCACTGGGATCGTCACTGCGGCGAAAACATGACAGAGTTCCCCTGTTTAATCTGTGATTACGTTGAAATCTCAAAGCCGAATCTTGAAACACATTTTCGAACTCATTTCAGACCTTCTagtgaattaatgaaaatgactcCCTTTATTAATTCCAGAGAGAAAACAAAGGCTCGACAACAGAAATTGTTGAAAagcaagataaaaattttcaacaaattgtCACGCTGtcgaaaatgtaaacaaaCTTTAGATGACGTTGAGGTTGCAGTTGAACATTGTCTGAAACACAAACCGcctaatgttaaattttatccttGCGTTTTGTGTGTGAATGGAATTGGAAAGTCGAAACTAAAGGAACATATAACAATGCATTATCCCATCATAACAAAATCAGTTCTCACCTGtgataattgtaataatttataccccgatgaaaaaacattgaaatatcATAGATGTacgaaattgagaaaatttaaatgctctCAATGCAAGCAAGGTTTCAAAAGTGAGGACAGACTAAAATTTCACGAGGACTTTCACAGGAATAAATCAACGTTTTGCGACATatgcaaaaaagattttaaatttgaatctcGTATATATTTACACTTTGCCGGAGTTCACAATGGAATACGTGAAAAACCCTATTGCTGCGATGTTTGTGGGAAAACTTTCACGTGGCTAACACTTCTGAATAGTCACAAAAGAACCCACACAAACGAAAGACCGTTCAAGTGCACAAAATGCGATGCCAGATTTTGCAGTAAATATTCACTCAACGGACACATGCCCAGTCACGACGATCATCCCCAAATGTATTGCGACAAATGCGATTATCACACGGGTAGGAAGCAAAACCTTCAGAATCATGTAAGTCGCTTCCACAAGGAAATCAATTCGTCGCAGATTTGCATTCGATGCAGGATTTGCAACGAGATATTCCCTAATAGACACCACGTCGACGTCGAAGGGCATTCAACCAGGCACACCGAACGGGAGATAAATTCCTTGTTGATCACGTTGGACTCCGAGAACGGCTCTCTCATGGATCCAGCGGATATCCTTCAGGAACTGATGGTCACCAAGCTGTTTCAGTGCGAGAGATGCGAGAGATGTTTCTCATCGTTGGATCATTTAACTAACCATCGGACAAGTCACGAGATGAACGACGCAAATTCCTTTTATCAGTGTCGACTCTGCGATAGCAGCTTCAGCAAACACGATCTTCTAGTGAAACATCAGAAAGTTCACGTTCGGATAACGTCCCAATATACAAGCAAGTTATCTGTGTTAATTGTGATCTCATGCGATATCTGCGGCATGGAATGTGTCGACTACCGACAATTGCTAAATCACAAAGACAGGGCCAACTGCATGATGAAGAAAATCACGGGAACTCTGCGACCGAGAAAAGTTTTGATCAAGAAGCATCTTCAACCTTTGAAAACGCATCAGCTCTTTGTCAATTCAAACGGTCTCTTCGAATGTCCCAGCTGTCAGAGGACGTACAAGAACCGCAGGAGATACCGCTTGCATTTGGCCACTCATTCCAACActgttttgtaa
- Protein Sequence
- MTTLSSADITGEFISNALGSDMSGLPEENLNPLSNERITNLQIVGNVQDQLKHASNISVMQIQEANLSHDSELQNIDEKRLTNIYITLPLNSNIKYSMNYICRLCAAVIDGNSAINIFSTDHFQENLACKINKYLPVIVYEADPFPKTVCRPCVTKLNQFHDLAEKCVLVEEQLRQTYVFDGRYLDELNKKIQKSDLELLKHESDNSDHLYSMTDFQYLENLDVSEGSNSTCKKEKREGENIVESLKSIKENVSEFKSEGMNCSIDKVNVDRPDEIIKCKFCEENLNEMKDCFDHWDRHCGENMTEFPCLICDYVEISKPNLETHFRTHFRPSSELMKMTPFINSREKTKARQQKLLKSKIKIFNKLSRCRKCKQTLDDVEVAVEHCLKHKPPNVKFYPCVLCVNGIGKSKLKEHITMHYPIITKSVLTCDNCNNLYPDEKTLKYHRCTKLRKFKCSQCKQGFKSEDRLKFHEDFHRNKSTFCDICKKDFKFESRIYLHFAGVHNGIREKPYCCDVCGKTFTWLTLLNSHKRTHTNERPFKCTKCDARFCSKYSLNGHMPSHDDHPQMYCDKCDYHTGRKQNLQNHVSRFHKEINSSQICIRCRICNEIFPNRHHVDVEGHSTRHTEREINSLLITLDSENGSLMDPADILQELMVTKLFQCERCERCFSSLDHLTNHRTSHEMNDANSFYQCRLCDSSFSKHDLLVKHQKVHVRITSQYTSKLSVLIVISCDICGMECVDYRQLLNHKDRANCMMKKITGTLRPRKVLIKKHLQPLKTHQLFVNSNGLFECPSCQRTYKNRRRYRLHLATHSNTVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01308279;
- 90% Identity
- iTF_01308279;
- 80% Identity
- iTF_01308279;