Rarc040657.1
Basic Information
- Insect
- Ricinus arcuatus
- Gene Symbol
- -
- Assembly
- GCA_027475445.1
- Location
- JAOXJT010004665.1:79014-82056[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0091 1.9 10.3 0.1 1 23 286 308 286 308 0.98 2 13 8.2 1.8e+03 1.0 0.0 13 23 388 398 377 398 0.85 3 13 1.5 3.2e+02 3.3 1.4 2 22 408 428 407 428 0.93 4 13 0.29 63 5.5 2.5 1 17 433 449 433 455 0.85 5 13 0.78 1.7e+02 4.2 0.6 3 17 462 476 460 483 0.78 6 13 0.00019 0.041 15.5 2.7 1 23 491 513 491 513 0.98 7 13 0.00044 0.095 14.4 3.3 1 20 519 538 519 541 0.93 8 13 0.0061 1.3 10.8 2.8 2 23 548 570 547 570 0.95 9 13 0.49 1.1e+02 4.8 0.1 2 15 581 594 580 596 0.91 10 13 0.00014 0.031 15.9 6.2 1 23 639 661 639 661 0.98 11 13 0.00012 0.026 16.1 2.8 1 23 670 692 670 692 0.99 12 13 0.041 8.7 8.2 0.2 2 20 710 728 709 730 0.92 13 13 0.0015 0.31 12.8 2.1 1 23 769 791 769 791 0.98
Sequence Information
- Coding Sequence
- ATGTCTGGTTTACCAGAAGAAAACTTAAATCCTTTAAGCAATGAAAGAATTACAAATTTGCAGATTGTTGGAAATGTCCAGGACCAACTCAAGCATGCAAGCAATATCTCTGTTATGCAAATTCAAGAAGCTAATCTCTCACATGATAGTGAGTTGCAGAATATTGATGAAAAAAGATTAACAAATATTTATATAACATTACCATTAAATTCAAACATTAAATATTCAATGAATTATATTTGTCGGCTTTGTGCAGCAGTCATTGATGGTAACTCAGCTATTAATATATTTTCTACAGATCACTTTCAAGAAAATTTAGCTTGCAAGATAAATAAATATTTACCTGTTATAGTTTATGAGGCAGATCCTTTTCCAAAGACTGTATGCAGACCTTGTGTTACTAAACTCAATCAATTCCATGATTTGGCAGAGAAATGTGTGCTAGTGGAGGAACAATTACGTCAAACCTATGTATTTGATGGAAGATATTTGGATGAATTAAACAAAAAGATCCAAAAATCGGATTTAGAGCTTTTGAAGCATGAATCAGACAATTCCGATCACTTATATTCAATGACCGATTTTCAGTACCTGGAAAATTTAGATGTAAGCGAAGGTTCCAATTCCACATGTAAAAAGGAAAAAAGAGAAGGCGAAAATATCGTGGAGAGCCTTAAATCAATTAAAGAAAACGTATCTGAATTTAAATCGGAAGGAATGAATTGCTCGATTGACAAAGTTAATGTGGATCGTCCGGATGAAATAATCAAATGTAAATTTTGTGAGGAAAATTTGAATGAGATGAAAGATTGCTTTGATCACTGGGATCGTCACTGCGGCGAAAACATGACAGAGTTCCCCTGTTTAATCTGTGATTACGTTGAAATCTCAAAGCCGAATCTTGAAACACATTTTCGAACTCATTTCAGACCTTCTAGTGAATTAATGAAAATGACTCCCTTTATTAATTCCAGAGAGAAAACAAAGGCTCGACAACAGAAATTGTTGAAAAGCAAGATAAAAATTTTCAACAAATTGTCACGCTGTCGAAAATGTAAACAAACTTTAGATGACGTTGAGGTTGCAGTTGAACATTGTCTGAAACACAAACCGCCTAATGTTAAATTTTATCCTTGCGTTTTGTGTGTGAATGGAATTGGAAAGTCGAAACTAAAGGAACATATAACAATGCATTATCCCATCATAACAAAATCAGTTCTCACCTGTGATAATTGTAATAATTTATACCCCGATGAAAAAACATTGAAATATCATAGATGTACGAAATTGAGAAAATTTAAATGCTCTCAATGCAAGCAAGGTTTCAAAAGTGAGGACAGACTAAAATTTCACGAGGACTTTCACAGGAATAAATCAACGTTTTGCGACATATGCAAAAAAGATTTTAAATTTGAATCTCGTATATATTTACACTTTGCCGGAGTTCACAATGGAATACGTgaaaaaccctattgctgcgatgtttgtgggaaaactttcacgtggctaacacttctgaatagtcacaaaagaacccacacaaacgaaagaccgttcaagtgcacaaaatgcgatgCCAGATTTTGCAGTAAATATTCACTCAACGGACACATGCCCAGTCACGACGATCATCCCCAAATGTATTGCGACAAATGCGATTATCACACGGGTAGGAAGCAAAACCTTCAGAATCATGTAAGTCGCTTCCACAAGGAAATCAATTCGTCGCAGATTTGCATTCGATGCAGGATTTGCAACGAGATATTCCCTAATAGACACCACGTCGACGTCGAAGGGCATTCAACCAGGCACACCGAACGGGAGATAAATTCCTTGTTGATCACGTTGGACTCCGAGAACGGCTCTCTCATGGATCCAGCGGATATCCTTCAGGAACTGATGGTCACCAAGCTGTTTCAGTGCGAGAGATGCGAGAGATGTTTCTCATCGTTGGATCATTTAACTAACCATCGGACAAGTCACGAGATGAACGACGCAAATTCCTTTTATCAGTGTCGACTCTGCGATAGCAGCTTCAGCAAACACGATCTTCTAGTGAAACATCAGAAAGTTCACGTTCGGATAACGTCCCAATATACAAGCAAGTTATCTGTGTTAATTGTGATCTCATGCGATATCTGCGGCATGGAATGTGTCGACTACCGACAATTGCTAAATCACAAAGACAGGGCCAACTGCATGATGAAGAAAATCACGGGAACTCTGCGACCGAGAAAAGTTTTGATCAAGAAGCATCTTCAACCTTTGAAAACGCATCAGCTCTTTGTCAATTCAAACGGTCTCTTCGAATGTCCCAGCTGTCAGAGGACGTACAAGAACCGCAGGAGATACCGCTTGCATTTGGCCACTCATTCCAACACTGTTTTGTAA
- Protein Sequence
- MSGLPEENLNPLSNERITNLQIVGNVQDQLKHASNISVMQIQEANLSHDSELQNIDEKRLTNIYITLPLNSNIKYSMNYICRLCAAVIDGNSAINIFSTDHFQENLACKINKYLPVIVYEADPFPKTVCRPCVTKLNQFHDLAEKCVLVEEQLRQTYVFDGRYLDELNKKIQKSDLELLKHESDNSDHLYSMTDFQYLENLDVSEGSNSTCKKEKREGENIVESLKSIKENVSEFKSEGMNCSIDKVNVDRPDEIIKCKFCEENLNEMKDCFDHWDRHCGENMTEFPCLICDYVEISKPNLETHFRTHFRPSSELMKMTPFINSREKTKARQQKLLKSKIKIFNKLSRCRKCKQTLDDVEVAVEHCLKHKPPNVKFYPCVLCVNGIGKSKLKEHITMHYPIITKSVLTCDNCNNLYPDEKTLKYHRCTKLRKFKCSQCKQGFKSEDRLKFHEDFHRNKSTFCDICKKDFKFESRIYLHFAGVHNGIREKPYCCDVCGKTFTWLTLLNSHKRTHTNERPFKCTKCDARFCSKYSLNGHMPSHDDHPQMYCDKCDYHTGRKQNLQNHVSRFHKEINSSQICIRCRICNEIFPNRHHVDVEGHSTRHTEREINSLLITLDSENGSLMDPADILQELMVTKLFQCERCERCFSSLDHLTNHRTSHEMNDANSFYQCRLCDSSFSKHDLLVKHQKVHVRITSQYTSKLSVLIVISCDICGMECVDYRQLLNHKDRANCMMKKITGTLRPRKVLIKKHLQPLKTHQLFVNSNGLFECPSCQRTYKNRRRYRLHLATHSNTVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01308964;
- 90% Identity
- iTF_01308964;
- 80% Identity
- iTF_01308964;