Basic Information

Gene Symbol
-
Assembly
GCA_028565995.1
Location
JAOWBB010000007.1:1613916-1620528[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 0.13 23 6.6 0.4 1 23 56 79 56 79 0.91
2 29 2.3 4e+02 2.8 1.8 5 23 89 108 85 108 0.86
3 29 0.00084 0.14 13.6 0.4 3 23 300 321 298 321 0.95
4 29 1.3 2.3e+02 3.5 0.1 1 20 327 346 327 348 0.93
5 29 2.2e-05 0.0038 18.6 0.8 1 23 393 416 393 416 0.94
6 29 1.2e-05 0.0021 19.4 0.8 1 23 434 457 434 457 0.92
7 29 1.7 3e+02 3.2 1.9 1 19 487 505 487 510 0.89
8 29 3.7 6.3e+02 2.1 0.6 3 23 550 571 548 571 0.89
9 29 0.06 10 7.8 0.1 2 23 578 599 577 599 0.96
10 29 0.00015 0.026 15.9 0.5 1 23 607 629 607 629 0.97
11 29 0.039 6.6 8.4 0.2 3 23 699 721 699 721 0.93
12 29 0.0025 0.43 12.1 0.7 1 23 724 747 724 747 0.97
13 29 0.0014 0.24 12.9 0.3 2 23 754 776 753 776 0.96
14 29 0.058 9.9 7.8 0.5 2 22 804 824 803 824 0.92
15 29 0.11 20 6.9 0.2 2 21 839 858 838 859 0.91
16 29 0.016 2.7 9.6 2.2 2 22 874 894 873 894 0.93
17 29 0.0061 1 10.9 0.6 2 23 912 934 911 934 0.90
18 29 0.035 5.9 8.5 1.1 3 23 972 994 971 994 0.92
19 29 0.58 99 4.7 1.6 2 23 1002 1024 1002 1024 0.94
20 29 0.00093 0.16 13.5 0.4 2 23 1092 1113 1091 1113 0.96
21 29 0.012 2.1 9.9 1.4 1 23 1128 1151 1128 1151 0.95
22 29 6.8 1.2e+03 1.3 1.9 3 23 1159 1180 1158 1180 0.80
23 29 0.0071 1.2 10.7 0.6 2 23 1186 1207 1185 1207 0.97
24 29 1.6 2.7e+02 3.3 0.3 2 23 1217 1239 1216 1239 0.93
25 29 0.31 53 5.5 0.3 3 23 1252 1273 1251 1273 0.94
26 29 0.066 11 7.6 1.8 1 23 1277 1300 1277 1300 0.97
27 29 7.9 1.4e+03 1.1 0.1 3 23 1329 1350 1327 1350 0.80
28 29 0.088 15 7.2 1.1 2 23 1359 1380 1358 1381 0.93
29 29 0.0049 0.84 11.2 0.8 3 23 1388 1408 1385 1408 0.89

Sequence Information

Coding Sequence
ATGTTTAACCTGGAAAATTATTACGATTTTTACGAAACCTGCATTAGAGCTCAGACGCTTTTACAAAGTAAATTGGGTGACGGAGGAGACGCATCCTTGGTTTCTAATGTTTCCTCTGGAGGTATAAAGGAAGAAATGGCGGGTTTACCAAATGCCGAAAGACCGTTTCCATGCGACCTGTGTCAAACTTCGTTCATGTCTGCGAAGGACAGATGGACTCATGTATCACAAAATCATAAAGGAGACGCAAGAATAACTTGTATATTCTGTCGGAAGGGTTTCAGTACAATTTCGAATCTGaactttcataaaaagaacaaaCATCCGGACGAGGTGGACGATCTCGAAAGGAAGTTGAAACCGCTCCCGAAGCTTCAAAAAATCAACGAAATTCCGAAGATCCAGAATAAAACCTACGAAACGgttcggaattttttaaatactaagactgaaaacattttacaagATGCCAGACATACCGATTtggcaaattttaatgttaaaataggAAATACAGACATTAAATTTGGTAGCATCACAGTCGGGAATACTGACATCAGGCTTGGTAACGCGACAAGTGAGAGTAAAGCTAACGAAAATAAGTCAATGATCGATAGATTGAAGAATCTAGGTGTTGAGGTTTCGAcaggaaatatgaaaattaacgaatgtaattataacaataaaaagggTAACGAAGAGATGGAAAGGCTTCGAAAAGCGATGAAACAACAgcaacagcagcagcaacagcaACATCAACAAATAAGATTGCTTCAAGCTAATGAAGATCCCAGCTCCGATTTTCAGAATCCTGAGGACCTCTTAGAATTAGATTTAGAATTAGAAGGAGGtgacaatattgaaaatatgatcGAATCAGAGACTGTTTTTGGCTGCGAAGTTTGTTTTCGAGACTTTAAAGATAGGTCATCATTGTGGCTTCACATGCTCTACTCGCATAAAGTTGAAGCCGGATATACTTGCGGTATTTGTTTAAAGTTATGTCCCGATTATAGAGAATTAGCCGAGCACGTGAGTATTTGCAAAGATCAAATAGACACAGAAAAAAGACGAACTTATGAAACCTCGCTGCAATTAACGAAACACAAATATAACGTTCATAAGAATCCAAATCGTTTGCAATATAGAAATGATTCTTTCGGTAATCCAGTTTACGAATGTGAATATTGCGGCCAGACATACGAATCTCCAAAGCAATTGACGAAACACCGCTacaatgtacataaatatccGGGTGGTGCTGCAATGAGTTTTGAAGACCCAGGGAAAGCTGCCTTCCAATGCAGTGATTGTCCGCGCGTTTTTGAAACACCGAGGCAATTGCAAAAACATAAATACAATGTACACAAAGCAATCAGGAAGCAGCCCGGACAAGCTGGTTGTGATAGTCCGAGCAGTGTCGAATCATTCAAACCGGGTTTTCATTACACATCGTTTGACTGTGAAATTTGTGGCGAAAAATCGGCAAGCAAAACGGAGCGATGGAAGCATTGTTATAGACAACACCATAGCGATGAGAAATTAGTCTGTTCAAATGAAGACTGTAGAAAAATAATgccaactgaaaattttcaaaaagaacaTATGAATTTCCATGCAATGCAAGGAAAATATCCTATTTGCTGTGAAATTTGTTCTAAATTGTGGTCTACAAAAATGGAATTCTGGAAGCATGTGTCAGGTGTGCATTATTCTCTGATAGGATTGACTTGTGGTGTTTGTATGAAGATGTTTCTCACACTCGACGAGCTCAAAGAACACATAAAAGTTCATGAACCACTGACAGAAGCGGAATTCAATTGCGATATTTGCGGTCGCGGATATTCATCGAAACCAAAAATGACAAGACATAGACTGATACATGAAAACGATCCGGAGAGCGATGAATATAACATATTGAAACATACACTATTGAAAGGTAATAAACCCCCGGAAAAAATGAAGTATGAGATTCTAAATATCCCGAAAGTAAACCGCAGTTATGACAATGATTTGGAAATTATTGAAGTGAATCCGGATGACAACGGTTTGGTTGATCTAGAACAAGAAGAAATGTCGGACAATCTTTGGTGTGATGTCTGTCCGGATTTGACATTTACCGATCTGGATGATTTACGTTCTCACAGACGAAACATTCATGCTCTGTATCCATGTGATCTTTGTCCAAAGTTTTACGGTGGAGTAAGTCATTTGTGGAAGCATACCAATCGAAGTCATAAAAACCATCCCGATATAACGTGTGAATTTTGCGGGAAAACGAGTGCAAGTCGCATTCAACTCCGGggtcatataaataaaaatcacaagGAAATCTTATTGGGTCATGTAGTATCTGATGGTGGAAGTCCAATGCATTCTATACCTGATCCTGATCCAACGAATCTCAACTGCAGAAGATGCGGGAGAGAATTCCGCATACGGTCACTGGTAAGGCGACACGAAAAGACATGCCTGACAAAAACTAATTTCGATCCTGATCCAACTAATTTGAATTGCCAAAAATGCGGAAAGTATTATCCGATTCGGTCTTTAGTCCGTCGACATGAAAAAGTTTGCTTGAACAGAATTATTAAGGATGTCGATCCGGCGAATCTGAACTGCAAAGTCTGCGGAAAGGAATTCCCGAAAAGATCTTATTGTCGTCGTCACGAAAGAACTTGTGgcacgaaaaaagaaagaccGCCTAAGGAAGAAGGGCCAGTGGAAATTCATTGCGAATGGTGTCCGAAGACATTCAATAATAGACGGGCTTATGCGAGTCATGTAGATTATATGCATAGTTTAGTCACCTGCGAAATATGTGAAGGCGATGAAAAGGCATCTTATCGATCCAAAACTGATTTATATAACCACTGTAAGGAAAAGCATGCTGATCATCCCGATTTGTTATgcacatttgaaaaatgcagAAGACTTTTAAGGAATAAAGGCGATTTAGAGAAGCATATGCGCGACCATAAAAATCGTGATAATCCTCCAACATGTGAATATTGCGCTGACATATTCAAAGGGCGCAAAAAGCTGAGAATACATATGCTCCACCAGCATAGATCGGAAGAATCTCGAAAATACGTCTGCGGTGTTTGTGTTAAGGTTCACGATGATACGGAAAAACTTATTGCTCACGCTTACGAAGCTCACAGTAAAATAATGGAACGAGACTTCGTTTGCAAAATTTGCGCGAAGCAATATAATTGTACGGCAAAAGTTTTGGatcatcataaaaattctCACGATCCATTGTACAAACCTTGCAAAGTCTGCTTAAGGATTTTTACCGATGAATCACTTCTTAAGGAACACTTGCAGCAGCATGCAGTAGGCGATCGCAGCGTAAATTCCGATTTAATAACGGGTCATCAGTGTTCGATATGCTCGGAAACGTTCGATACCGTAGTCTTGTTGCATGAGCACGTGAAGGAAAATCATCCAAATCTTAAGGAAAATTCTTGTTtaatttgtggaaaaaaataccaaagTATTTATACTTGCTATGATCATATGGAAAACAAACATGGTAATACTTACATGACATGCAGAAAGTGCTTGATGATGTTCACggataaagatgaaaaagcgGCGCACATGCTAACTCATGGCCTTCAGGAAGAGGTTGATTTACTTACGTGCACCGTTTGTCGCACTAAAAATGATTCTGAAGAAGCCCTCGAGAGTCATATGAAAGAATCTCATCCGGAATTGTTTCAAGAAACGGCAGATCGGAATATATGTTTGATATGTTccaaagtattaaaatataagtatagCATTTTTGTGCACGTGGAAAAGAATCATCCAAACAATTATTGCTGTAGAGTttgtttaatgatttataaagaaaaagaaaaattagaggAACATATGCAGAGGCTACATACTCGTGATAAATCCAATTCCCTCGGGTATTCCCCAAAAGCCGGAAATAAAAGATATGCAAGCATGAAACGACCTAAGTTTTTGTGTGCCGTGTGTAACGTAATCGAGGAATCCACAGAgtcattaataaaacatttgaaaaaggaacACGAGTACGTGTTGTCCAAAGACCTTACTTGTTACATATGTGGAATAACGTATGCAAGTCGATTTAAAGTGTATGATCACGTGAAAAACCATCACGGACCTCCGTACATTTGCTGTAGAAAATGTCTCAAAGTTTTCGATAACGAAAATGATCTGAACGTTCATATCGAAGAACATTCGAATGAAGAAACTCCGAAACCTTCAAAACCAGCGATTGGCCCCGgttcaaaaagaaaacgaaaacgcGATTCGGTCGGTCATTGTACAAAAAGATCAAGAACTGTTAAGTCTAGACTtgtgaataatgtaaataattatgtgaACGAAGACGCCGAAGCAGAAGCAGAAGCAGAGGCAGACGTTGACGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAGGCAGAAGCAGATGCGGATGCGGAAGCAGAAGCAGATGCAGATGCAGATGCAGATGCAGATGCAGATGCAGATGCAGATGTAGATGCCGAAGCCGAAGAGGAAGCAATCGAAGAAGAGGAGGACATTGAGGAGGAAGAGTTAGAAGAAGACGAGAACGAGGCATCGATCGATTACAACATTGATATAAAGGAGGAAATGGATGACGTTGAGTCCGAGATGGATTTCGACAACGAAACGGAAGACGATGACgattccaaaatgaaaaacgaagcCGACGAAGACGATGAGGATGATATCGATGACAGTGAGGAAGATGAGGAAGACGACGAAGAATCGAAGCTTGCGTTAgacaaagaaaaggaagataGTTACGTGTGCGAGACTGTGAGAAACGAAAAGGGAAGTGAggagtttaaaattaagatcaaACACAGTATCGGAACGAAGGGAGAAGAGGAGGATGGAAGGGGAGGGAAGAAGGATGATTTGAACAGTATGGATAAGAATAATTACGTAGGAAACGGGGAGGAGAATGAAGATTCCAAGGATTCTGAGGATGGAAGAATGGCCAACCTTATGGAGGACATTAAGAGTCTAACCTCCTGCGGAGCGGAATAA
Protein Sequence
MFNLENYYDFYETCIRAQTLLQSKLGDGGDASLVSNVSSGGIKEEMAGLPNAERPFPCDLCQTSFMSAKDRWTHVSQNHKGDARITCIFCRKGFSTISNLNFHKKNKHPDEVDDLERKLKPLPKLQKINEIPKIQNKTYETVRNFLNTKTENILQDARHTDLANFNVKIGNTDIKFGSITVGNTDIRLGNATSESKANENKSMIDRLKNLGVEVSTGNMKINECNYNNKKGNEEMERLRKAMKQQQQQQQQQHQQIRLLQANEDPSSDFQNPEDLLELDLELEGGDNIENMIESETVFGCEVCFRDFKDRSSLWLHMLYSHKVEAGYTCGICLKLCPDYRELAEHVSICKDQIDTEKRRTYETSLQLTKHKYNVHKNPNRLQYRNDSFGNPVYECEYCGQTYESPKQLTKHRYNVHKYPGGAAMSFEDPGKAAFQCSDCPRVFETPRQLQKHKYNVHKAIRKQPGQAGCDSPSSVESFKPGFHYTSFDCEICGEKSASKTERWKHCYRQHHSDEKLVCSNEDCRKIMPTENFQKEHMNFHAMQGKYPICCEICSKLWSTKMEFWKHVSGVHYSLIGLTCGVCMKMFLTLDELKEHIKVHEPLTEAEFNCDICGRGYSSKPKMTRHRLIHENDPESDEYNILKHTLLKGNKPPEKMKYEILNIPKVNRSYDNDLEIIEVNPDDNGLVDLEQEEMSDNLWCDVCPDLTFTDLDDLRSHRRNIHALYPCDLCPKFYGGVSHLWKHTNRSHKNHPDITCEFCGKTSASRIQLRGHINKNHKEILLGHVVSDGGSPMHSIPDPDPTNLNCRRCGREFRIRSLVRRHEKTCLTKTNFDPDPTNLNCQKCGKYYPIRSLVRRHEKVCLNRIIKDVDPANLNCKVCGKEFPKRSYCRRHERTCGTKKERPPKEEGPVEIHCEWCPKTFNNRRAYASHVDYMHSLVTCEICEGDEKASYRSKTDLYNHCKEKHADHPDLLCTFEKCRRLLRNKGDLEKHMRDHKNRDNPPTCEYCADIFKGRKKLRIHMLHQHRSEESRKYVCGVCVKVHDDTEKLIAHAYEAHSKIMERDFVCKICAKQYNCTAKVLDHHKNSHDPLYKPCKVCLRIFTDESLLKEHLQQHAVGDRSVNSDLITGHQCSICSETFDTVVLLHEHVKENHPNLKENSCLICGKKYQSIYTCYDHMENKHGNTYMTCRKCLMMFTDKDEKAAHMLTHGLQEEVDLLTCTVCRTKNDSEEALESHMKESHPELFQETADRNICLICSKVLKYKYSIFVHVEKNHPNNYCCRVCLMIYKEKEKLEEHMQRLHTRDKSNSLGYSPKAGNKRYASMKRPKFLCAVCNVIEESTESLIKHLKKEHEYVLSKDLTCYICGITYASRFKVYDHVKNHHGPPYICCRKCLKVFDNENDLNVHIEEHSNEETPKPSKPAIGPGSKRKRKRDSVGHCTKRSRTVKSRLVNNVNNYVNEDAEAEAEAEADVDAEAEAEAEAEAEAEAEAEAEADADAEAEADADADADADADADADVDAEAEEEAIEEEEDIEEEELEEDENEASIDYNIDIKEEMDDVESEMDFDNETEDDDDSKMKNEADEDDEDDIDDSEEDEEDDEESKLALDKEKEDSYVCETVRNEKGSEEFKIKIKHSIGTKGEEEDGRGGKKDDLNSMDKNNYVGNGEENEDSKDSEDGRMANLMEDIKSLTSCGAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01308215;
90% Identity
iTF_01308215;
80% Identity
-