Basic Information

Insect: Ricinus arcuatus
Gene Symbol: -
Assembly: GCA_027475445.1
Location: JAOXJT010000007.1:2390913-2397525[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 31 0.14 30 6.5 0.4 1 23 56 79 56 79 0.91

2 31 2.4 5.1e+02 2.6 1.8 5 23 89 108 85 108 0.86

3 31 0.00088 0.19 13.5 0.4 3 23 300 321 298 321 0.95

4 31 1.4 3e+02 3.4 0.1 1 20 327 346 327 348 0.93

5 31 7.3 1.6e+03 1.1 2.9 1 23 360 382 360 382 0.97

6 31 0.0053 1.1 11.0 2.0 1 23 501 524 501 524 0.92

7 31 2.3e-05 0.0049 18.4 0.8 1 23 542 565 542 565 0.94

8 31 1.3e-05 0.0027 19.2 0.8 1 23 583 606 583 606 0.92

9 31 1.8 3.8e+02 3.0 1.9 1 19 636 654 636 659 0.89

10 31 3.8 8.1e+02 2.0 0.6 3 23 699 720 697 720 0.89

11 31 0.062 13 7.6 0.1 2 23 727 748 726 748 0.96

12 31 0.00016 0.033 15.8 0.5 1 23 756 778 756 778 0.97

13 31 0.04 8.5 8.2 0.2 3 23 848 870 848 870 0.93

14 31 0.0026 0.56 12.0 0.7 1 23 873 896 873 896 0.97

15 31 0.0015 0.32 12.7 0.3 2 23 903 925 902 925 0.96

16 31 0.06 13 7.7 0.5 2 22 953 973 952 973 0.92

17 31 0.12 25 6.7 0.2 2 21 988 1007 987 1008 0.91

18 31 0.017 3.6 9.4 2.2 2 22 1023 1043 1022 1043 0.93

19 31 0.0063 1.3 10.8 0.6 2 23 1061 1083 1060 1083 0.90

20 31 0.036 7.7 8.4 1.1 3 23 1121 1143 1120 1143 0.92

21 31 0.6 1.3e+02 4.5 1.6 2 23 1151 1173 1151 1173 0.94

22 31 0.00097 0.21 13.3 0.4 2 23 1241 1262 1240 1262 0.96

23 31 0.013 2.7 9.8 1.4 1 23 1277 1300 1277 1300 0.95

24 31 7 1.5e+03 1.2 1.9 3 23 1308 1329 1307 1329 0.80

25 31 0.0074 1.6 10.5 0.6 2 23 1335 1356 1334 1356 0.97

26 31 1.6 3.5e+02 3.2 0.3 2 23 1366 1388 1365 1388 0.93

27 31 0.32 68 5.4 0.3 3 23 1401 1422 1400 1422 0.94

28 31 0.069 15 7.5 1.8 1 23 1426 1449 1426 1449 0.97

29 31 8.2 1.8e+03 1.0 0.1 3 23 1478 1499 1476 1499 0.80

30 31 0.092 20 7.1 1.1 2 23 1508 1529 1507 1530 0.93

31 31 0.0051 1.1 11.0 0.8 3 23 1537 1557 1534 1557 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	31	0.14	30	6.5	0.4	1	23	56	79	56	79	0.91
2	31	2.4	5.1e+02	2.6	1.8	5	23	89	108	85	108	0.86
3	31	0.00088	0.19	13.5	0.4	3	23	300	321	298	321	0.95
4	31	1.4	3e+02	3.4	0.1	1	20	327	346	327	348	0.93
5	31	7.3	1.6e+03	1.1	2.9	1	23	360	382	360	382	0.97
6	31	0.0053	1.1	11.0	2.0	1	23	501	524	501	524	0.92
7	31	2.3e-05	0.0049	18.4	0.8	1	23	542	565	542	565	0.94
8	31	1.3e-05	0.0027	19.2	0.8	1	23	583	606	583	606	0.92
9	31	1.8	3.8e+02	3.0	1.9	1	19	636	654	636	659	0.89
10	31	3.8	8.1e+02	2.0	0.6	3	23	699	720	697	720	0.89
11	31	0.062	13	7.6	0.1	2	23	727	748	726	748	0.96
12	31	0.00016	0.033	15.8	0.5	1	23	756	778	756	778	0.97
13	31	0.04	8.5	8.2	0.2	3	23	848	870	848	870	0.93
14	31	0.0026	0.56	12.0	0.7	1	23	873	896	873	896	0.97
15	31	0.0015	0.32	12.7	0.3	2	23	903	925	902	925	0.96
16	31	0.06	13	7.7	0.5	2	22	953	973	952	973	0.92
17	31	0.12	25	6.7	0.2	2	21	988	1007	987	1008	0.91
18	31	0.017	3.6	9.4	2.2	2	22	1023	1043	1022	1043	0.93
19	31	0.0063	1.3	10.8	0.6	2	23	1061	1083	1060	1083	0.90
20	31	0.036	7.7	8.4	1.1	3	23	1121	1143	1120	1143	0.92
21	31	0.6	1.3e+02	4.5	1.6	2	23	1151	1173	1151	1173	0.94
22	31	0.00097	0.21	13.3	0.4	2	23	1241	1262	1240	1262	0.96
23	31	0.013	2.7	9.8	1.4	1	23	1277	1300	1277	1300	0.95
24	31	7	1.5e+03	1.2	1.9	3	23	1308	1329	1307	1329	0.80
25	31	0.0074	1.6	10.5	0.6	2	23	1335	1356	1334	1356	0.97
26	31	1.6	3.5e+02	3.2	0.3	2	23	1366	1388	1365	1388	0.93
27	31	0.32	68	5.4	0.3	3	23	1401	1422	1400	1422	0.94
28	31	0.069	15	7.5	1.8	1	23	1426	1449	1426	1449	0.97
29	31	8.2	1.8e+03	1.0	0.1	3	23	1478	1499	1476	1499	0.80
30	31	0.092	20	7.1	1.1	2	23	1508	1529	1507	1530	0.93
31	31	0.0051	1.1	11.0	0.8	3	23	1537	1557	1534	1557	0.89

Sequence Information

Coding Sequence: ATGTTTAACCTGGAAAATTATTACGATTTTTACGAAACCTGCATTAGAGCTCAGACGCTTTTACAAAGTAAATTGGGTGACGGAGGAGACGCATCCTTGGTTTCTAATGTTTCCTCTGGAGGTATAAAGGAAGAAATGGCGGGTTTACCAAATGCCGAAAGACCGTTTCCATGCGACCTGTGTCAAACTTCGTTCATGTCTGCGAAGGACAGATGGACTCATGTATCACAAAATCATAAAGGAGACGCAAGAATAACTTGTATATTCTGTCGGAAGGGTTTCAGTACAATTTCGAATCTGAACTTTCATAAAAAGAACAAACATCCGGACGAGGTGGACGATCTCGAAAGGAAGTTGAAACCGCTCCCGAAGCTTCAAAAAATCAACGAAATTCCGAAGATCCAGAATAAAACCTACGAAACGGTTCGGAATTTTTTAAATACTAAGACTGAAAACATTTTACAAGATGCCAGACATACCGATTTGGCAAATTTTAATGTTAAAATAGGAAATACAGACATTAAATTTGGTAGCATCACAGTCGGGAATACTGACATCAGGCTTGGTAACGCGACAAGTGAGAGTAAAGCTAACGAAAATAAGTCAATGATCGATAGATTGAAGAATCTAGGTGTTGAGGTTTCGACAGGAAATATGAAAATTAACGAATGTAATTATAACAATAAAAAGGGTAACGAAGAGATGGAAAGGCTTCGAAAAGCGATGAAACAACAGCAACAGCAGCAGCAACAGCAACATCAACAAATAAGATTGCTTCAAGCTAATGAAGATCCCAGCTCCGATTTTCAGAATCCTGAGGACCTCTTAGAATTAGATTTAGAATTAGAAGGAGGTGACAATATTGAAAATATGATCGAATCAGAGACTGTTTTTGGCTGCGAAGTTTGTTTTCGAGACTTTAAAGATAGGTCATCATTGTGGCTTCACATGCTCTACTCGCATAAAGTTGAAGCCGGATATACTTGCGGTATTTGTTTAAAGTTATGTCCCGATTATAGAGAATTAGCCGAGCACGTGAGTATTTGCAAAGATCAAATAGACACAGAAAAAAGACGGTATTATTGCTTAATATGTTACAGACAGCATGAATCAAAGAAAAAATTGGAGTCTCACACTTTAATACATAATTTAAATGACGATTATATTAAGGAAAATTTTGATTTAAATAATTTAATTTCAACAAATCCTACAATGACCGAAAAAATGAAATACGAAGATTACATGGAGGCTGATGTTAGTGAATATTCGGATACATATTCGCAGGAAATGGACATGACAAACGATTCCACTCAAAATAGTTTAAATATGGGTAACGGTAATGGACATAACTATTACAGCGATATGCAAAGTTATCAAGATCAATTAGCGTATCAGAATTTTTTAGAAGGCTCAGGACACTTTCTTGAATCATCCTCTTTTTTTGATAATGTTAAAACCGATGAAAATAAAACGGAAATGAACGCAGACGATCAAAATAAATTTCGCTGCGACGAGTGTTATAGAACTTATGAAACCTCGCTGCAATTAACGAAACACAAATATAACGTTCATAAGAATCCAAATCGTTTGCAATATAGAAATGATTCTTTCGGTAATCCAGTTTACGAATGTGAATATTGCGGCCAGACATACGAATCTCCAAAGCAATTGACGAAACACCGCTACAATGTACATAAATATCCGGGTGGTGCTGCAATGAGTTTTGAAGACCCAGGGAAAGCTGCCTTCCAATGCAGTGATTGTCCGCGCGTTTTTGAAACACCGAGGCAATTGCAAAAACATAAATACAATGTACACAAAGCAATCAGGAAGCAGCCCGGACAAGCTGGTTGTGATAGTCCGAGCAGTGTCGAATCATTCAAACCGGGTTTTCATTACACATCGTTTGACTGTGAAATTTGTGGCGAAAAATCGGCAAGCAAAACGGAGCGATGGAAGCATTGTTATAGACAACACCATAGCGATGAGAAATTAGTCTGTTCAAATGAAGACTGTAGAAAAATAATGCCAACTGAAAATTTTCAAAAAGAACATATGAATTTCCATGCAATGCAAGGAAAATATCCTATTTGCTGTGAAATTTGTTCTAAATTGTGGTCTACAAAAATGGAATTCTGGAAGCATGTGTCAGGTGTGCATTATTCTCTGATAGGATTGACTTGTGGTGTTTGTATGAAGATGTTTCTCACACTCGACGAGCTCAAAGAACACATAAAAGTTCATGAACCACTGACAGAAGCGGAATTCAATTGCGATATTTGCGGTCGCGGATATTCATCGAAACCAAAAATGACAAGACATAGACTGATACATGAAAACGATCCGGAGAGCGATGAATATAACATATTGAAACATACACTATTGAAAGGTAATAAACCCCCGGAAAAAATGAAGTATGAGATTCTAAATATCCCGAAAGTAAACCGCAGTTATGACAATGATTTGGAAATTATTGAAGTGAATCCGGATGACAACGGTTTGGTTGATCTAGAACAAGAAGAAATGTCGGACAATCTTTGGTGTGATGTCTGTCCGGATTTGACATTTACCGATCTGGATGATTTACGTTCTCACAGACGAAACATTCATGCTCTGTATCCATGTGATCTTTGTCCAAAGTTTTACGGTGGAGTAAGTCATTTGTGGAAGCATACCAATCGAAGTCATAAAAACCATCCCGATATAACGTGTGAATTTTGCGGGAAAACGAGTGCAAGTCGCATTCAACTCCGGGGTCATATAAATAAAAATCACAAGGAAATCTTATTGGGTCATGTAGTATCTGATGGTGGAAGTCCAATGCATTCTATACCTGATCCTGATCCAACGAATCTCAACTGCAGAAGATGCGGGAGAGAATTCCGCATACGGTCACTGGTAAGGCGACACGAAAAGACATGCCTGACAAAAACTAATTTCGATCCTGATCCAACTAATTTGAATTGCCAAAAATGCGGAAAGTATTATCCGATTCGGTCTTTAGTCCGTCGACATGAAAAAGTTTGCTTGAACAGAATTATTAAGGATGTCGATCCGGCGAATCTGAACTGCAAAGTCTGCGGAAAGGAATTCCCGAAAAGATCTTATTGTCGTCGTCACGAAAGAACTTGTGGCACGAAAAAAGAAAGACCGCCTAAGGAAGAAGGGCCAGTGGAAATTCATTGCGAATGGTGTCCGAAGACATTCAATAATAGACGGGCTTATGCGAGTCATGTAGATTATATGCATAGTTTAGTCACCTGCGAAATATGTGAAGGCGATGAAAAGGCATCTTATCGATCCAAAACTGATTTATATAACCACTGTAAGGAAAAGCATGCTGATCATCCCGATTTGTTATGCACATTTGAAAAATGCAGAAGACTTTTAAGGAATAAAGGCGATTTAGAGAAGCATATGCGCGACCATAAAAATCGTGATAATCCTCCAACATGTGAATATTGCGCTGACATATTCAAAGGGCGCAAAAAGCTGAGAATACATATGCTCCACCAGCATAGATCGGAAGAATCTCGAAAATACGTCTGCGGTGTTTGTGTTAAGGTTCACGATGATACGGAAAAACTTATTGCTCACGCTTACGAAGCTCACAGTAAAATAATGGAACGAGACTTCGTTTGCAAAATTTGCGCGAAGCAATATAATTGTACGGCAAAAGTTTTGGATCATCATAAAAATTCTCACGATCCATTGTACAAACCTTGCAAAGTCTGCTTAAGGATTTTTACCGATGAATCACTTCTTAAGGAACACTTGCAGCAGCATGCAGTAGGCGATCGCAGCGTAAATTCCGATTTAATAACGGGTCATCAGTGTTCGATATGCTCGGAAACGTTCGATACCGTAGTCTTGTTGCATGAGCACGTGAAGGAAAATCATCCAAATCTTAAGGAAAATTCTTGTTTAATTTGTGGAAAAAAATACCAAAGTATTTATACTTGCTATGATCATATGGAAAACAAACATGGTAATACTTACATGACATGCAGAAAGTGCTTGATGATGTTCACGGATAAAGATGAAAAAGCGGCGCACATGCTAACTCATGGCCTTCAGGAAGAGGTTGATTTACTTACGTGCACCGTTTGTCGCACTAAAAATGATTCTGAAGAAGCCCTCGAGAGTCATATGAAAGAATCTCATCCGGAATTGTTTCAAGAAACGGCAGATCGGAATATATGTTTGATATGTTCCAAAGTATTAAAATATAAGTATAGCATTTTTGTGCACGTGGAAAAGAATCATCCAAACAATTATTGCTGTAGAGTTTGTTTAATGATTTATAAAGAAAAAGAAAAATTAGAGGAACATATGCAGAGGCTACATACTCGTGATAAATCCAATTCCCTCGGGTATTCCCCAAAAGCCGGAAATAAAAGATATGCAAGCATGAAACGACCTAAGTTTTTGTGTGCCGTGTGTAACGTAATCGAGGAATCCACAGAGTCATTAATAAAACATTTGAAAAAGGAACACGAGTACGTGTTGTCCAAAGACCTTACTTGTTACATATGTGGAATAACGTATGCAAGTCGATTTAAAGTGTATGATCACGTGAAAAACCATCACGGACCTCCGTACATTTGCTGTAGAAAATGTCTCAAAGTTTTCGATAACGAAAATGATCTGAACGTTCATATCGAAGAACATTCGAATGAAGAAACTCCGAAACCTTCAAAACCAGCGATTGGCCCCGGTTCAAAAAGAAAACGAAAACGCGATTCGGTCGGTCATTGTACAAAAAGATCAAGAACTGTTAAGTCTAGACTTGTGAATAATGTAAATAATTATGTGAacgaagacgccgaagcagaagcagaagcagaggcagacgttgacgcagaagcagaagcagaagcagaagcagaagcagaagcagaagcagaagcagaggcagaagcagatgcggatgcggaagcagaagcagatgcagatgcagatgcagatgcagatgcagatgcagatgcagatgtagatgccgaagccgaagaggaagcaatcgaagaagaggaggacattgaGGAGGAAGAGTTAGAAGAAGacgagaacgaggcatcgatcgattacaacattgatataaaggaggaaatggatgacgttgagtccgagatggatttcgacaacgaaacggaagacgatgacgattccaaaatgaaaaacgaagccgacgaagacgatgaggatgatatcgatgacagtgaggaagatgaggaagacgacgaagaatcgaagcttgcgttagacaaagaaaaggaagatAGTTACGTGTGCGAGACTGTGAGAAACGAAAAGGGAAGTGAGGAGTTTAAAATTAAGATCAAACACAGTATCGGAACGAAGGGAGAAGAGGAGGATGGAAGGGGAGGGAAGAAGGATGATTTGAACAGTATGGATAAGAATAATTACGTAGGAAACGGGGAGGAGAATGAAGATTCCAAGGATTCTGAGGATGGAAGAATGGCCAACCTTATGGAGGACATTAAGAGTCTAACCTCCTGCGGAGCGGAATAA
Protein Sequence: MFNLENYYDFYETCIRAQTLLQSKLGDGGDASLVSNVSSGGIKEEMAGLPNAERPFPCDLCQTSFMSAKDRWTHVSQNHKGDARITCIFCRKGFSTISNLNFHKKNKHPDEVDDLERKLKPLPKLQKINEIPKIQNKTYETVRNFLNTKTENILQDARHTDLANFNVKIGNTDIKFGSITVGNTDIRLGNATSESKANENKSMIDRLKNLGVEVSTGNMKINECNYNNKKGNEEMERLRKAMKQQQQQQQQQHQQIRLLQANEDPSSDFQNPEDLLELDLELEGGDNIENMIESETVFGCEVCFRDFKDRSSLWLHMLYSHKVEAGYTCGICLKLCPDYRELAEHVSICKDQIDTEKRRYYCLICYRQHESKKKLESHTLIHNLNDDYIKENFDLNNLISTNPTMTEKMKYEDYMEADVSEYSDTYSQEMDMTNDSTQNSLNMGNGNGHNYYSDMQSYQDQLAYQNFLEGSGHFLESSSFFDNVKTDENKTEMNADDQNKFRCDECYRTYETSLQLTKHKYNVHKNPNRLQYRNDSFGNPVYECEYCGQTYESPKQLTKHRYNVHKYPGGAAMSFEDPGKAAFQCSDCPRVFETPRQLQKHKYNVHKAIRKQPGQAGCDSPSSVESFKPGFHYTSFDCEICGEKSASKTERWKHCYRQHHSDEKLVCSNEDCRKIMPTENFQKEHMNFHAMQGKYPICCEICSKLWSTKMEFWKHVSGVHYSLIGLTCGVCMKMFLTLDELKEHIKVHEPLTEAEFNCDICGRGYSSKPKMTRHRLIHENDPESDEYNILKHTLLKGNKPPEKMKYEILNIPKVNRSYDNDLEIIEVNPDDNGLVDLEQEEMSDNLWCDVCPDLTFTDLDDLRSHRRNIHALYPCDLCPKFYGGVSHLWKHTNRSHKNHPDITCEFCGKTSASRIQLRGHINKNHKEILLGHVVSDGGSPMHSIPDPDPTNLNCRRCGREFRIRSLVRRHEKTCLTKTNFDPDPTNLNCQKCGKYYPIRSLVRRHEKVCLNRIIKDVDPANLNCKVCGKEFPKRSYCRRHERTCGTKKERPPKEEGPVEIHCEWCPKTFNNRRAYASHVDYMHSLVTCEICEGDEKASYRSKTDLYNHCKEKHADHPDLLCTFEKCRRLLRNKGDLEKHMRDHKNRDNPPTCEYCADIFKGRKKLRIHMLHQHRSEESRKYVCGVCVKVHDDTEKLIAHAYEAHSKIMERDFVCKICAKQYNCTAKVLDHHKNSHDPLYKPCKVCLRIFTDESLLKEHLQQHAVGDRSVNSDLITGHQCSICSETFDTVVLLHEHVKENHPNLKENSCLICGKKYQSIYTCYDHMENKHGNTYMTCRKCLMMFTDKDEKAAHMLTHGLQEEVDLLTCTVCRTKNDSEEALESHMKESHPELFQETADRNICLICSKVLKYKYSIFVHVEKNHPNNYCCRVCLMIYKEKEKLEEHMQRLHTRDKSNSLGYSPKAGNKRYASMKRPKFLCAVCNVIEESTESLIKHLKKEHEYVLSKDLTCYICGITYASRFKVYDHVKNHHGPPYICCRKCLKVFDNENDLNVHIEEHSNEETPKPSKPAIGPGSKRKRKRDSVGHCTKRSRTVKSRLVNNVNNYVNEDAEAEAEAEADVDAEAEAEAEAEAEAEAEAEAEADADAEAEADADADADADADADADVDAEAEEEAIEEEEDIEEEELEEDENEASIDYNIDIKEEMDDVESEMDFDNETEDDDDSKMKNEADEDDEDDIDDSEEDEEDDEESKLALDKEKEDSYVCETVRNEKGSEEFKIKIKHSIGTKGEEEDGRGGKKDDLNSMDKNNYVGNGEENEDSKDSEDGRMANLMEDIKSLTSCGAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01308898;
90% Identity: iTF_01308898;
80% Identity: -