Rmar022798.1
Basic Information
- Insect
- Ricinus marginatus
- Gene Symbol
- -
- Assembly
- GCA_028565995.1
- Location
- JAOWBB010007966.1:39974-43540[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.24 41 5.9 0.5 1 19 145 163 145 166 0.87 2 17 0.00048 0.082 14.4 0.8 1 23 172 195 172 195 0.92 3 17 0.0021 0.36 12.3 2.5 2 23 200 221 199 221 0.96 4 17 0.00036 0.061 14.8 0.4 1 23 246 268 246 268 0.96 5 17 0.00023 0.039 15.4 1.4 1 23 274 296 274 296 0.98 6 17 0.19 32 6.2 0.1 1 23 320 342 320 342 0.96 7 17 0.075 13 7.5 0.8 1 20 506 525 506 529 0.90 8 17 0.0003 0.051 15.0 0.6 1 23 532 554 532 554 0.96 9 17 0.021 3.5 9.2 2.3 1 23 566 588 566 588 0.96 10 17 0.00024 0.042 15.3 0.1 2 23 595 617 594 617 0.90 11 17 0.0041 0.7 11.4 1.7 3 23 622 642 620 642 0.95 12 17 4.9e-05 0.0083 17.5 1.4 1 23 650 672 650 672 0.97 13 17 0.11 18 7.0 2.3 1 23 678 700 678 700 0.85 14 17 4.1e-05 0.007 17.7 0.4 1 23 706 728 706 728 0.97 15 17 1e-05 0.0017 19.6 4.2 1 23 734 756 734 756 0.99 16 17 2.9e-05 0.0049 18.2 0.6 1 23 762 784 762 784 0.98 17 17 0.00021 0.036 15.5 1.7 1 23 790 813 790 813 0.97
Sequence Information
- Coding Sequence
- ATGTGCAAATGTTTCGTCTGCGATGAGAGAGTCATTAACAATGGTGTTCCTCTACTCCAAAGCACTACTCAGGTTTCAAACACAGATCTCCCAACCAAAATCGGACAGCTTATGGGAGAGAGGTTTATGGTCGTCGTGTCGTCTGACGATGTCCTCTGCCGCAAATGCCACGCTCTCGTCAATCACGTAGACAAGTTAGAATCCGATCTGTTTCTAGTCAAGAGATCACTCATAAACCACCTGAAAAAGAAGTATGGTTTGAACGAGGATCAAATCAAAGAGACTGgaaaaaaggaagccgAGCCAGAGTACATAATCATTCAAGATGGCGAATCGGAAGAAGACCTAGAGCCACAGTCGAAGAGATCAAAATCAAATCGGGAAATACGTTACCGAGCGATAAAGCCAAAACCTTCGAATGCTGTCGACTTATACAAATGTTCCACGTGTGATTTTGTAACAGTGCAGAGCGATCTCCTGGCCTGCCACCGTTTGGTATGCGGCTCCTTGGCGTATAAGTGCACGATGTGTGATAAAAAGTTCGAGAGTCAAAAAATGGTTCTGAACCACAAAATCGAAGCCCATCTCACGAAATGGATCTGCCACTTttgtaacattaattttaacgatgaaaaaaagtttacggttcatatgaaaaatcatttaggtGATAGATTGAACGATAAATTCGCGAAAAAATCGGATGatatgaaaaaggagaaaactgTCGTCGTGTTTCAATGCCCTCACTGCCCTGAAAACTTCGAGGCTTTCAGTCAACTTCAGATACATCTCGTGAACCATTCCTCTTCCGTCACCTTCAAGTGCGTCCGCTGTGACATCggatttcaaagtaaaaagaaGTTAATCAAACATATTAAATCACACGAAGACGCACCCCTCGATGAGTATATCGTCCCCGACAGCCCAAAGGAGATGGAAGTGAGCGAAGCGATTTACTCCTGCCCGATGTGCTCGCTTAATTTCCTCCAGGAAGATGTGTATATTCGGCATTTGAGCATACATCCAGAATTCGTTGCGGCTGAAGAAGCATCTGAACGGTCGAATCTTTTCGCGAaggaaaacgaggaaaatgGGCTTAAATCAGACGAGGAAACTTGCCATTGTAATGAGGAGTCCTGTGTTAAATGCAATggagagagaaaagagaaTGAGGAAGACGCGGATACCGATAGGGGAGTCGATGGAAAAGGTAAAGAATCGTTTTATGGGGAGAACCCAGGTGAGGAGTCTTCGCATCTAGCATTAAATCAGTTACTGTATGTAAATTCGCTAAACGTATCATTAATAGAGGAAAATgttcctttgaaaaattcgtCAGCTGAcaaaaaaactgatgaaaatcAAACCGAAATAGAAAAGAACAGTAAATCAGTTGAAGACATTCTTGAAAACATGTTTCAGGTGAAAGATGAAGATGATATGAAAAACGGTCCAGATGGTAACGAGAATCCGGACACGGAacaacatattaataatttaaaaagcaagacTTACGTTTGTGCCGATTGCTCGTTTTCAACACAGAATCTGTCCACGCTAAAGCAGCATTTTGTCGAAAAACACGAGACGTTTAAATGCTGGATATGCGACAAGTCATTCGAAATGGATGAactgaaaaaacatttgacGATGGAACACGGCGCTAATCAGCCTCCATCACAAGCGAAATATTATGCCTGCCTACACTGCTCGGAGAAGTTCATAAATAGACGGGCATTGCATCTTCATGAAGTGACTCAtccagaaaatttaagaattgaGTGCCCCGATtgcgggaaaaaatttgccCGGGACAAATTTCTCAACGAGCATCGGGACGAAGCCCACGTCGTGTCTCACTGTCGAATATGCAACAAGGCTTTCGGTAACGTGAAGCAGCTCAAGTCACACGAGGCGCGACACGCGCGAGGCgacaaaaatcaattcaaatgCACGGACTGCGACAGAATCTTCCAGACCCCGACGGGTCTTCGCCACCACAAGGCGATACACACGGGGGAATTCAAATACAAATGCGAATTCTGCGACAAGGGCTTTGTTTCTCGGGTGCGTTGCGAGGAGCACAGAGCCTCCCACACGAAGGAGGAAAGATATGCGTGCGAGGTGTGTGGCAAAAAGTTCTCCTTTCAGGCGACTTATTGGATCCACAGGAAGTGGCATGATAATCCAACACCGTACAAATGTGAGTACTGCGGTAGATTATTCAAGCATTCCTCCCTCCTTTCCGTTCACAAGCGGAAGCACACGGGAGAAAGACCGTACGAATGCCCACATTGCGATCAGTCTTTTGCCGTCGGCAACACACTTAAAAGGCATCTCATGCTTCACACGGGTGTATTCCCATTCAAATGCAGCATTTGCGATCAGGGATTTTCCGGCAAGCACAAAATGGCTCAACATATGAGCAAAGTTCACCAGGACAATTCGCTACTCGAGCAGCAAGCTCAGAAAAAACAAACGGAATATAAAATGGTGGTCAAACCGGAGGCACAGAAAGGGGCGATTAACGCAGATCCGTTGGCTAACCAAACTTGGATATTGACCGAGGATGAAAGCCAAGCGTCACAGCTCTTGACGTTGCAGACGGAGGAAGGTGAGAGCATACCTTGCACTCTGTTAACCGACGAAATGATAGATATGGTTAACGCGAACAACCGGATTGTGGAGATAATACCCTATGATTCAATAAAAACGGAGAACGAGGATAAATCGGAGGAAGGTAATTTCATTCAGTTAGATGAAACTGAAAGATCCAATTTGGGCATCGTCGGGGACGAAGATTTCTCAGGGCAAAGAGAAGAGTATCATCAGGGGGTTGAAAATAAACCGGAAGAGAGTGAAAACAAAGTTTTAGTGACGTCGTCAATGGTCAACATGGATTCATATCACAGTGCAAACGGTGAAGattctcaaaataaaagtgaCAACGTTAGTGAAACTTTGTCCGAACACTTTTCCGCCGGGTTGTAG
- Protein Sequence
- MCKCFVCDERVINNGVPLLQSTTQVSNTDLPTKIGQLMGERFMVVVSSDDVLCRKCHALVNHVDKLESDLFLVKRSLINHLKKKYGLNEDQIKETGKKEAEPEYIIIQDGESEEDLEPQSKRSKSNREIRYRAIKPKPSNAVDLYKCSTCDFVTVQSDLLACHRLVCGSLAYKCTMCDKKFESQKMVLNHKIEAHLTKWICHFCNINFNDEKKFTVHMKNHLGDRLNDKFAKKSDDMKKEKTVVVFQCPHCPENFEAFSQLQIHLVNHSSSVTFKCVRCDIGFQSKKKLIKHIKSHEDAPLDEYIVPDSPKEMEVSEAIYSCPMCSLNFLQEDVYIRHLSIHPEFVAAEEASERSNLFAKENEENGLKSDEETCHCNEESCVKCNGERKENEEDADTDRGVDGKGKESFYGENPGEESSHLALNQLLYVNSLNVSLIEENVPLKNSSADKKTDENQTEIEKNSKSVEDILENMFQVKDEDDMKNGPDGNENPDTEQHINNLKSKTYVCADCSFSTQNLSTLKQHFVEKHETFKCWICDKSFEMDELKKHLTMEHGANQPPSQAKYYACLHCSEKFINRRALHLHEVTHPENLRIECPDCGKKFARDKFLNEHRDEAHVVSHCRICNKAFGNVKQLKSHEARHARGDKNQFKCTDCDRIFQTPTGLRHHKAIHTGEFKYKCEFCDKGFVSRVRCEEHRASHTKEERYACEVCGKKFSFQATYWIHRKWHDNPTPYKCEYCGRLFKHSSLLSVHKRKHTGERPYECPHCDQSFAVGNTLKRHLMLHTGVFPFKCSICDQGFSGKHKMAQHMSKVHQDNSLLEQQAQKKQTEYKMVVKPEAQKGAINADPLANQTWILTEDESQASQLLTLQTEEGESIPCTLLTDEMIDMVNANNRIVEIIPYDSIKTENEDKSEEGNFIQLDETERSNLGIVGDEDFSGQREEYHQGVENKPEESENKVLVTSSMVNMDSYHSANGEDSQNKSDNVSETLSEHFSAGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01308181;
- 90% Identity
- iTF_01308181;
- 80% Identity
- iTF_01308181;