Basic Information

Insect: Ricinus arcuatus
Gene Symbol: -
Assembly: GCA_027475445.1
Location: JAOXJT010005086.1:273604-277275[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.24 50 5.8 0.5 1 19 180 198 180 201 0.87

2 17 0.00047 0.1 14.3 0.8 1 23 207 230 207 230 0.92

3 17 0.0021 0.45 12.3 2.5 2 23 235 256 234 256 0.96

4 17 0.00035 0.075 14.7 0.4 1 23 281 303 281 303 0.96

5 17 0.00023 0.048 15.3 1.4 1 23 309 331 309 331 0.98

6 17 0.19 40 6.1 0.1 1 23 355 377 355 377 0.96

7 17 0.074 16 7.4 0.8 1 20 541 560 541 564 0.90

8 17 0.0003 0.063 14.9 0.6 1 23 567 589 567 589 0.96

9 17 0.02 4.3 9.2 2.3 1 23 601 623 601 623 0.96

10 17 0.00024 0.051 15.2 0.1 2 23 630 652 629 652 0.90

11 17 0.0041 0.87 11.4 1.7 3 23 657 677 655 677 0.95

12 17 4.8e-05 0.01 17.4 1.4 1 23 685 707 685 707 0.97

13 17 0.1 22 6.9 2.3 1 23 713 735 713 735 0.85

14 17 4.1e-05 0.0086 17.7 0.4 1 23 741 763 741 763 0.97

15 17 1e-05 0.0021 19.6 4.2 1 23 769 791 769 791 0.99

16 17 2.9e-05 0.0061 18.1 0.6 1 23 797 819 797 819 0.98

17 17 0.00021 0.044 15.4 1.7 1 23 825 848 825 848 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.24	50	5.8	0.5	1	19	180	198	180	201	0.87
2	17	0.00047	0.1	14.3	0.8	1	23	207	230	207	230	0.92
3	17	0.0021	0.45	12.3	2.5	2	23	235	256	234	256	0.96
4	17	0.00035	0.075	14.7	0.4	1	23	281	303	281	303	0.96
5	17	0.00023	0.048	15.3	1.4	1	23	309	331	309	331	0.98
6	17	0.19	40	6.1	0.1	1	23	355	377	355	377	0.96
7	17	0.074	16	7.4	0.8	1	20	541	560	541	564	0.90
8	17	0.0003	0.063	14.9	0.6	1	23	567	589	567	589	0.96
9	17	0.02	4.3	9.2	2.3	1	23	601	623	601	623	0.96
10	17	0.00024	0.051	15.2	0.1	2	23	630	652	629	652	0.90
11	17	0.0041	0.87	11.4	1.7	3	23	657	677	655	677	0.95
12	17	4.8e-05	0.01	17.4	1.4	1	23	685	707	685	707	0.97
13	17	0.1	22	6.9	2.3	1	23	713	735	713	735	0.85
14	17	4.1e-05	0.0086	17.7	0.4	1	23	741	763	741	763	0.97
15	17	1e-05	0.0021	19.6	4.2	1	23	769	791	769	791	0.99
16	17	2.9e-05	0.0061	18.1	0.6	1	23	797	819	797	819	0.98
17	17	0.00021	0.044	15.4	1.7	1	23	825	848	825	848	0.97

Sequence Information

Coding Sequence: ATGAAACCGCAAAACACGGAGACCAGGACGTTGAAGCCGATTCTTCCAAAGCCTAATACTGGTATTCTGACGCGAGTTATAGAAATAAATGCACCGACATTGCCCATGTGCAAATGTTTCGTCTGCGATGAGAGAGTCATTAACAATGGTGTTCCTCTACTCCAAAGCACTACTCAGGTTTCAAACACAGATCTCCCAACCAAAATCGGACAGCTTATGGGAGAGAGGTTTATGGTCGTCGTGTCGTCTGACGATGTCCTCTGCCGCAAATGCCACGCTCTCGTCAATCACGTAGACAAGTTAGAATCCGATCTGTTTCTAGTCAAGAGATCACTCATAAACCACCTGAAAAAGAAGTATGGTTTGAACGAGGATCAAATCAAAGAGACTGGAAAAAAGGAAGCCGAGCCAGAGTACATAATCATTCAAGATGGCGAATCGGAAGAAGACCTAGAGCCACAGTCGAAGAGATCAAAATCAAATCGGGAAATACGTTACCGAGCGATAAAGCCAAAACCTTCGAATGCTGTCGACTTATACAAATGTTCCACGTGTGATTTTGTAACAGTGCAGAGCGATCTCCTGGCCTGCCACCGTTTGGTATGCGGCTCCTTGGCGTATAAGTGCACGATGTGTGATAAAAAGTTCGAGAGTCAAAAAATGGTTCTGAACCACAAAATCGAAGCCCATCTCACGAAATGGATCTGCCACTTTTGTAACATTAATTTTAACGATGAAAAAAAGTTTACGGTTCATATGAAAAATCATTTAGGTGATAGATTGAACGATAAATTCGCGAAAAAATCGGATGATATGAAAAAGGAGAAAACTGTCGTCGTGTTTCAATGCCCTCACTGCCCTGAAAACTTCGAGGCTTTCAGTCAACTTCAGATACATCTCGTGAACCATTCCTCTTCCGTCACCTTCAAGTGCGTCCGCTGTGACATCGGATTTCAAAGTAAAAAGAAGTTAATCAAACATATTAAATCACACGAAGACGCACCCCTCGATGAGTATATCGTCCCCGACAGCCCAAAGGAGATGGAAGTGAGCGAAGCGATTTACTCCTGCCCGATGTGCTCGCTTAATTTCCTCCAGGAAGATGTGTATATTCGGCATTTGAGCATACATCCAGAATTCGTTGCGGCTGAAGAAGCATCTGAACGGTCGAATCTTTTCGCGAAGGAAAACGAGGAAAATGGGCTTAAATCAGACGAGGAAACTTGCCATTGTAATGAGGAGTCCTGTGTTAAATGCAATGGAGAGAGAAAAGAGAATGAGGAAGACGCGGATACCGATAGGGGAGTCGATGGAAAAGGTAAAGAATCGTTTTATGGGGAGAACCCAGGTGAGGAGTCTTCGCATCTAGCATTAAATCAGTTACTGTATGTAAATTCGCTAAACGTATCATTAATAGAGGAAAATGTTCCTTTGAAAAATTCGTCAGCTGACAAAAAAACTGATGAAAATCAAACCGAAATAGAAAAGAACAGTAAATCAGTTGAAGACATTCTTGAAAACATGTTTCAGGTGAAAGATGAAGATGATATGAAAAACGGTCCAGATGGTAACGAGAATCCGGACACGGAACAACATATTAATAATTTAAAAAGCAAGACTTACGTTTGTGCCGATTGCTCGTTTTCAACACAGAATCTGTCCACGCTAAAGCAGCATTTTGTCGAAAAACACGAGACGTTTAAATGCTGGATATGCGACAAGTCATTCGAAATGGATGAACTGAAAAAACATTTGACGATGGAACACGGCGCTAATCAGCCTCCATCACAAGCGAAATATTATGCCTGCCTACACTGCTCGGAGAAGTTCATAAATAGACGGGCATTGCATCTTCATGAAGTGACTCATCCAGAAAATTTAAGAATTGAGTGCCCCGATTGCGGGAAAAAATTTGCCCGGGACAAATTTCTCAACGAGCATCGGGACGAAGCCCACGTCGTGTCTCACTGTCGAATATGCAACAAGGCTTTCGGTAACGTGAAGCAGCTCAAGTCACACGAGGCGCGACACGCGCGAGGcgacaaaaatcaattcaaatgcacggactgcgacagaatcttccagaccccgacgggtcttcgccaccacaaggcgatacacacgggggaattcaaatacaaatgcgaattctgcgacaagggctttgtttctcgagtgcgttgcgaggagcacagagcctcccacacgaaggaggaaagatatgcgtgcgaggtgtgtggcaaaaagttctcctttcaggcgacttattggatccacaggaagtggcatgataatccaacaccgtacaaatgtgagtactgcggtaGATTATTCAAGCATTCCTCCCTCCTTTCCGTTCACAAGCGGAAGCACACGGGAGAAAGACCGTACGAATGCCCACATTGCGATCAGTCTTTTGCCGTCGGCAACACACTTAAAAGGCATCTCATGCTTCACACGGGTGTATTCCCATTCAAATGCAGCATTTGCGATCAGGGATTTTCCGGCAAGCACAAAATGGCTCAACATATGAGCAAAGTTCACCAGGACAATTCGCTACTCGAGCAGCAAGCTCAGAAAAAACAAACGGAATATAAAATGGTGGTCAAACCGGAGGCACAGAAAGGGGCGATTAACGCAGATCCGTTGGCTAACCAAACTTGGATATTGACCGAGGATGAAAGCCAAGCGTCACAGCTCTTGACGTTGCAGACGGAGGAAGGTGAGAGCATACCTTGCACTCTGTTAACCGACGAAATGATAGATATGGTTAACGCGAACAACCGGATTGTGGAGATAATACCCTATGATTCAATAAAAACGGAGAACGAGGATAAATCGGAGGAAGGTAATTTCATTCAGTTAGATGAAACTGAAAGATCCAATTTGGGCATCGTCGGGGACGAAGATTTCTCAGGGCAAAGAGAAGAGTATCATCAGGGGGTTGAAAATAAACCGGAAGAGAGTGAAAACAAAGTTTTAGTGACGTCGTCAATGGTCAACATGGATTCATATCACAGTGCAAACGGTGAAGATTCTCAAAATAAAAGTGACAACGTTAGTGAAACTTTGTCCGAACACTTTTCCGCCGGGTTGTAG
Protein Sequence: MKPQNTETRTLKPILPKPNTGILTRVIEINAPTLPMCKCFVCDERVINNGVPLLQSTTQVSNTDLPTKIGQLMGERFMVVVSSDDVLCRKCHALVNHVDKLESDLFLVKRSLINHLKKKYGLNEDQIKETGKKEAEPEYIIIQDGESEEDLEPQSKRSKSNREIRYRAIKPKPSNAVDLYKCSTCDFVTVQSDLLACHRLVCGSLAYKCTMCDKKFESQKMVLNHKIEAHLTKWICHFCNINFNDEKKFTVHMKNHLGDRLNDKFAKKSDDMKKEKTVVVFQCPHCPENFEAFSQLQIHLVNHSSSVTFKCVRCDIGFQSKKKLIKHIKSHEDAPLDEYIVPDSPKEMEVSEAIYSCPMCSLNFLQEDVYIRHLSIHPEFVAAEEASERSNLFAKENEENGLKSDEETCHCNEESCVKCNGERKENEEDADTDRGVDGKGKESFYGENPGEESSHLALNQLLYVNSLNVSLIEENVPLKNSSADKKTDENQTEIEKNSKSVEDILENMFQVKDEDDMKNGPDGNENPDTEQHINNLKSKTYVCADCSFSTQNLSTLKQHFVEKHETFKCWICDKSFEMDELKKHLTMEHGANQPPSQAKYYACLHCSEKFINRRALHLHEVTHPENLRIECPDCGKKFARDKFLNEHRDEAHVVSHCRICNKAFGNVKQLKSHEARHARGDKNQFKCTDCDRIFQTPTGLRHHKAIHTGEFKYKCEFCDKGFVSRVRCEEHRASHTKEERYACEVCGKKFSFQATYWIHRKWHDNPTPYKCEYCGRLFKHSSLLSVHKRKHTGERPYECPHCDQSFAVGNTLKRHLMLHTGVFPFKCSICDQGFSGKHKMAQHMSKVHQDNSLLEQQAQKKQTEYKMVVKPEAQKGAINADPLANQTWILTEDESQASQLLTLQTEEGESIPCTLLTDEMIDMVNANNRIVEIIPYDSIKTENEDKSEEGNFIQLDETERSNLGIVGDEDFSGQREEYHQGVENKPEESENKVLVTSSMVNMDSYHSANGEDSQNKSDNVSETLSEHFSAGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01308864;
90% Identity: iTF_01308864;
80% Identity: iTF_01308864;