Rmar000889.2
Basic Information
- Insect
- Ricinus marginatus
- Gene Symbol
- ZNF775
- Assembly
- GCA_028565995.1
- Location
- JAOWBB010000002.1:894797-898449[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.7e-05 0.0046 18.3 0.9 1 23 144 166 144 166 0.95 2 14 0.012 2.1 9.9 5.1 1 23 172 194 172 194 0.97 3 14 5.4e-06 0.00092 20.5 0.3 1 23 298 320 298 320 0.97 4 14 0.00021 0.036 15.5 3.3 1 23 326 349 326 349 0.97 5 14 0.006 1 10.9 4.7 1 23 380 402 380 402 0.98 6 14 0.016 2.7 9.6 0.7 3 23 442 463 440 463 0.93 7 14 5.9e-05 0.01 17.2 1.7 3 19 472 488 471 492 0.95 8 14 5.9e-05 0.01 17.2 2.6 1 23 498 522 498 522 0.98 9 14 0.00011 0.018 16.4 1.4 2 23 529 550 528 550 0.97 10 14 3.1e-05 0.0052 18.1 0.5 1 23 559 581 559 581 0.97 11 14 0.00061 0.1 14.0 0.1 3 23 589 609 587 609 0.97 12 14 4.3e-05 0.0074 17.6 0.4 1 23 615 637 615 638 0.96 13 14 0.02 3.5 9.2 0.0 1 23 652 674 652 674 0.95 14 14 0.45 77 5.0 0.0 1 16 928 943 928 947 0.90
Sequence Information
- Coding Sequence
- atgacTCAAGTTCATCCCAGCATGAATTGGGTGCAAAATAATTCAGCTTTAGTTGAAGAAGAAGTTATTTATGGAGgcaatgaatatatattaccACAAAAGACTTCTGCTAATATAGGATTTATTACCCTCCCAGAAGAGGTACCAATGATTGTTATTGAAAGCAATCAAGTTTCTGCTGAAACTGATGCACCCATGATCATTGTTGGTAATGATGTATGTGAACAAATGATTTGTGCTGAAGAAGAAGTGGAAACTGAAGTTGATATATCCTGGTATACAAGTCCTCCAGTTGCACATGAAGAAACAATAGACACACAATCTGAGCCAAGAAAAACTAAGGGTGAAGGTTGTGTTGCAGTAccatatttaaaagaagaggTAGTGGATATTCCATTAAATGATGAAAGCTATGCTACATATCATCCTTTTCCTTGTGACTTTTGCAGTCGCCGATTTAAAAAGAAGGCTAATTTAATGAATCACATGGTAGCACATCAAACTCAGAGACCTCATTCTTGCAATATTTGTTCATCTCGTTTTATGAGAAAGTGTGATCTTGTTAATCatcaaaaaatacattcttaTGTACCCAATAGGGAAAATCGTCGTGATATGGAAGAAACCCTAAAGTTCAATCATCTGCAAAGTCCTGTAGGTAAAAGAAGTAttaaaagagttaaaaataGTTCAAAATCTATAACTAAAGAAAAgtccaaaattcaaaataatgcagcacaaggaaatttaaattattttaaaccgaCTAGTTATGTTGATGAAGATGTTAAGTTATTACTTGAAATGACTAATAGacttcatgaaaaaaatactaataatgACAAGAATGTCTTTAAGGATATTAATCAAACAGGAAATGAAGAAAGGCCATATATATGCAATAAATGTGgtagaaatttttcaaggGAAAGTGCACTAATTTCACATTCACAAGTTCATGCTGAAGATACGCATTATGAGTGTGAGAAATGTggccataattttttcactcagGAGTTATTAAAGGatcattatatgaaaaagcaTGACATTCCTTATGTGGAAGATACCTCTGacgaaagagaagaaaaagagactGAACAAGGAAAATATACTGGTGACGAACGTTTTGGAACATTTCATTGTTCTCTTTGTAGCGCGAGCTTTCATCGCTTGGATCTATTGAGGCAACACAAAcggattcattcaaaaaaagaagattatcAACAATACTATAAATGTAATTCCTCAATGGCATTATTTTCAACACAAGAAAAGTTATTACTCCATctagaaaataatgttaataatcaGAAGCATCTTTGCTTATTATGTGGAGAGCAATTCATGGATCAAAACGATGTTGAAAAACATATTCAGCAAAAACACAGGCGAGACCTTCCACCAAATGCTTGCCATTATTGTGGTAAACAATTTAAAGACAAAAGGGCTCTTCAGAAACATTTTTGGATTCACTCTAATGATAAAAAGTACTCCTGTAAAAAATTAGACTGTCCTAAAAAGTTTCATAGCTGGGCAAGATTGAGAagACATATGCTATCTCATAATGCTACCAAAGTTGTGCGATGTGATGAATGTAATGAAATGTTCTCCGACAGACGAGCTTTGATAAATCACCGTCACAGACATTTCCCCGATTCCAGTTCACGTAAATTCATTTGCAATGAATGTGGCAAATCATTTGGTTCACGGAGCAGCCAGCAAATTCATAATCGTATTCATACTGGCGAACGACCTTATGGATGTCGTTACTGCTGGAAGGCATTTGCAGATGGAGGCACTCTTAGGAAGCATGAACGCATTCATACTGGCGAAAAACCTTATGAATGTGTCGTTTGTCCAAGAGCTTTTAATCAAAGAGTTGTATTGCGCGAACATATACGATCGCATCATTCTGGTTCCACATCAAAACCAGGATATGCTACTCCTATATATTTATGCCCAGTTTGTGGTATTGTAGTAGCTGAGTCTGAAGAATTGGCGATGCACCTCGTAAAGCATAGTGATGATAATACAATTAGAAATCGAAATCCACAGAACGGAAACAGAGGTTATAAGAGAAGGAGGAAAGTGACTTATGAGTATAACGATCACGATTTTGAACAGTTAGACTTTTTtgatagtgaaaaaaaagatagtgAAACCGAATCAGGTGATTCGGATAAAGAAACGTCGAAAAGtggatcaaataaaaaaatagttcgAAGTAAAAAAGTTGATCCTTATTCTAAGTTCACAAAAACTTTCGAAGCGgctatgaaaaatattagttcTTTAGTTGAAACAAAGTCCTCGCGTAAAGCAAAAATGATAAGTACAAAACCAAAATCAACATTAAAGACTGGCAAAAAAATGTCACGACGAGCCGGTCGGAAAAGCAATACATCGATAAGTGGTAAACAGACTACAGCTGCCGGAAAACCAAGAACAAGAACACTCTCTGTTCGTGCTACGGGAAGAAAGAACAGCTGTAATGAAAGTGCAAATAACACTTCGGATGAATGTCGGTCTCATCTAAATAGCGAGGAAAGTAACATTCGACTTTCCATGTCCagatctaaaaatttcaaatatgaacAAGTTAGCGAAAATGTTACagaaattaatgcatttcccgaaaggggaaaaaaaattcgaaaacctgCCGCTTttcaaaagaaggaaattgaaGACAAGAAAAGTTTGGAGAATGAAATGGATATTAAAACcgaaataaaggaagaaatagTTGAAGAAAGTTTCAGCATTGGAAATGATAGTTATATTTGTGGTATCTGCAGCAATGTTTTTCCTAGTAAAGCTGATCTGTTGTTTCATGTACCTGTTCATATATAG
- Protein Sequence
- MTQVHPSMNWVQNNSALVEEEVIYGGNEYILPQKTSANIGFITLPEEVPMIVIESNQVSAETDAPMIIVGNDVCEQMICAEEEVETEVDISWYTSPPVAHEETIDTQSEPRKTKGEGCVAVPYLKEEVVDIPLNDESYATYHPFPCDFCSRRFKKKANLMNHMVAHQTQRPHSCNICSSRFMRKCDLVNHQKIHSYVPNRENRRDMEETLKFNHLQSPVGKRSIKRVKNSSKSITKEKSKIQNNAAQGNLNYFKPTSYVDEDVKLLLEMTNRLHEKNTNNDKNVFKDINQTGNEERPYICNKCGRNFSRESALISHSQVHAEDTHYECEKCGHNFFTQELLKDHYMKKHDIPYVEDTSDEREEKETEQGKYTGDERFGTFHCSLCSASFHRLDLLRQHKRIHSKKEDYQQYYKCNSSMALFSTQEKLLLHLENNVNNQKHLCLLCGEQFMDQNDVEKHIQQKHRRDLPPNACHYCGKQFKDKRALQKHFWIHSNDKKYSCKKLDCPKKFHSWARLRRHMLSHNATKVVRCDECNEMFSDRRALINHRHRHFPDSSSRKFICNECGKSFGSRSSQQIHNRIHTGERPYGCRYCWKAFADGGTLRKHERIHTGEKPYECVVCPRAFNQRVVLREHIRSHHSGSTSKPGYATPIYLCPVCGIVVAESEELAMHLVKHSDDNTIRNRNPQNGNRGYKRRRKVTYEYNDHDFEQLDFFDSEKKDSETESGDSDKETSKSGSNKKIVRSKKVDPYSKFTKTFEAAMKNISSLVETKSSRKAKMISTKPKSTLKTGKKMSRRAGRKSNTSISGKQTTAAGKPRTRTLSVRATGRKNSCNESANNTSDECRSHLNSEESNIRLSMSRSKNFKYEQVSENVTEINAFPERGKKIRKPAAFQKKEIEDKKSLENEMDIKTEIKEEIVEESFSIGNDSYICGICSNVFPSKADLLFHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01308174;
- 90% Identity
- iTF_01308174;
- 80% Identity
- iTF_01308174;