Rarc010034.1
Basic Information
- Insect
- Ricinus arcuatus
- Gene Symbol
- ZNF775
- Assembly
- GCA_027475445.1
- Location
- JAOXJT010000002.1:1376619-1380250[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.5e-05 0.0054 18.3 0.9 1 23 137 159 137 159 0.95 2 14 0.011 2.4 9.9 5.1 1 23 165 187 165 187 0.97 3 14 5.1e-06 0.0011 20.5 0.3 1 23 291 313 291 313 0.97 4 14 0.0002 0.042 15.5 3.3 1 23 319 342 319 342 0.97 5 14 0.0056 1.2 10.9 4.7 1 23 373 395 373 395 0.98 6 14 0.015 3.2 9.6 0.7 3 23 435 456 433 456 0.93 7 14 5.6e-05 0.012 17.2 1.7 3 19 465 481 464 485 0.95 8 14 5.6e-05 0.012 17.2 2.6 1 23 491 515 491 515 0.98 9 14 0.0001 0.021 16.4 1.4 2 23 522 543 521 543 0.97 10 14 2.9e-05 0.0061 18.1 0.5 1 23 552 574 552 574 0.97 11 14 0.00057 0.12 14.0 0.1 3 23 582 602 580 602 0.97 12 14 4.1e-05 0.0087 17.7 0.4 1 23 608 630 608 631 0.96 13 14 0.019 4.1 9.2 0.0 1 23 645 667 645 667 0.95 14 14 0.43 91 5.0 0.0 1 16 921 936 921 940 0.90
Sequence Information
- Coding Sequence
- ATGAATTGGGTGCAAAATAATTCAGCTTTAGTTGAAGAAGAAGTTATTTATGGAGGCAATGAATATATATTACCACAAAAGACTTCTGCTAATATAGGATTTATTACCCTCCCAGAAGAGGTACCAATGATTGTTATTGAAAGCAATCAAGTTTCTGCTGAAACTGATGCACCCATGATCATTGTTGGTAATGATGTATGTGAACAAATGATTTGTGCTGAAGAAGAAGTGGAAACTGAAGTTGATATATCCTGGTATACAAGTCCTCCAGTTGCACATGAAGAAACAATAGACACACAATCTGAGCCAAGAAAAACTAAGGGTGAAGGTTGTGTTGCAGTACCATATTTAAAAGAAGAGGTAGTGGATATTCCATTAAATGATGAAAGCTATGCTACATATCATCCTTTTCCTTGTGACTTTTGCAGTCGCCGATTTAAAAAGAAGGCTAATTTAATGAATCACATGGTAGCACATCAAACTCAGAGACCTCATTCTTGCAATATTTGTTCATCTCGTTTTATGAGAAAGTGTGATCTTGTTAATCATCAAAAAATACATTCTTATGTACCCAATAGGGAAAATCGTCGTGATATGGAAGAAACCCTAAAGTTCAATCATCTGCAAAGTCCTGTAGGTAAAAGAAGTATTAAAAGAGTTAAAAATAGTTCAAAATCTATAACTAAAGAAAAGTCCAAAATTCAAAATAATGCAGCACAAGGAAATTTAAATTATTTTAAACCGACTAGTTATGTTGATGAAGATGTTAAGTTATTACTTGAAATGACTAATAGACTTCATGAAAAAAATACTAATAATGACAAGAATGTCTTTAAGGATATTAATCAAACAGGAAATGAAGAAAGGCCATATATATGCAATAAATGTGGTAGAAATTTTTCAAGGGAAAGTGCACTAATTTCACATTCACAAGTTCATGCTGAAGATACGCATTATGAGTGTGAGAAATGTGGCCATAATTTTTTCACTCAGGAGTTATTAAAGGATCATTATATGAAAAAGCATGACATTCCTTATGTGGAAGATACCTCTGACGAAAGAGAAGAAAAAGAGACTGAACAAGGAAAATATACTGGTGACGAACGTTTTGGAACATTTCATTGTTCTCTTTGTAGCGCGAGCTTTCATCGCTTGGATCTATTGAGGCAACACAAACGGATTCATTCAAAAAAAGAAGATTATCAACAATACTATAAATGTAATTCCTCAATGGCATTATTTTCAACACAAGAAAAGTTATTACTCCATCTAGAAAATAATGTTAATAATCAGAAGCATCTTTGCTTATTATGTGGAGAGCAATTCATGGATCAAAACGATGTTGAAAAACATATTCAGCAAAAACACAGGCGAGACCTTCCACCAAATGCTTGCCATTATTGTGGTAAACAATTTAAAGACAAAAGGGCTCTTCAGAAACATTTTTGGATTCACTCTAATGATAAAAAGTACTCCTGTAAAAAATTAGACTGTCCTAAAAAGTTTCATAGCTGGGCAAGATTGAGAAGACATATGCTATCTCATAATGCTACCAAAGTTGTGCGATGTGATGAATGTAATGAAATGTTCTCCGACAGACGAGCTTTGATAAATCACCGTCACAGACATTTCCCCGATTCCAGTTCACGTAAATTCATTtgcaatgaatgtggcaaatcatttggttcacggagcagccagcaaattcataatcgtattcatactggcgaacgaccttatggatgtcgttactgctggaaggcatttgcagatggaggcactcttaggaagcatgaacgcattcatactggcgaaaaaccttatgaatgtgtcgtttgtccaagagcttttaatcaaagAGTTGTATTGCGCGAACATATACGATCGCATCATTCTGGTTCCACATCAAAACCAGGATATGCTACTCCTATATATTTATGCCCAGTTTGTGGTATTGTAGTAGCTGAGTCTGAAGAATTGGCGATGCACCTCGTAAAGCATAGTGATGATAATACAATTAGAAATCGAAATCCACAGAACGGAAACAGAGGTTATAAGAGAAGGAGGAAAGTGACTTATGAGTATAACGATCACGATTTTGAACAGTTAGACTTTTTTGATAGTGAAAAAAAAGATAGTGAAACCGAATCAGGTGATTCGGATAAAGAAACGTCGAAAAGTGGATCAAATAAAAAAATAGTTCGAAGTAAAAAAGTTGATCCTTATTCTAAGTTCACAAAAACTTTCGAAGCGGCTATGAAAAATATTAGTTCTTTAGTTGAAACAAAGTCCTCGCGTAAAGCAAAAATGATAAGTACAAAACCAAAATCAACATTAAAGACTGGCAAAAAAATGTCACGACGAGCCGGTCGGAAAAGCAATACATCGATAAGTGGTAAACAGACTACAGCTGCCGGAAAACCAAGAACAAGAACACTCTCTGTTCGTGCTACGGGAAGAAAGAACAGCTGTAATGAAAGTGCAAATAACACTTCGGATGAATGTCGGTCTCATCTAAATAGCGAGGAAAGTAACATTCGACTTTCCATGTCCAGATCTAAAAATTTCAAATATGAACAAGTTAGCGAAAATGTTACAGAAATTAATGCATTTCCCGAAAGGGGAAAAAAAATTCGAAAACCTGCCGCTTTTCAAAAGAAGGAAATTGAAGACAAGAAAAGTTTGGAGAATGAAATGGATATTAAAACCGAAATAAAGGAAGAAATAGTTGAAGAAAGTTTCAGCATTGGAAATGATAGTTATATTTGTGGTATCTGCAGCAATGTTTTTCCTAGTAAAGCTGATCTGTTGTTTCATGTACCTGTTCATATATAG
- Protein Sequence
- MNWVQNNSALVEEEVIYGGNEYILPQKTSANIGFITLPEEVPMIVIESNQVSAETDAPMIIVGNDVCEQMICAEEEVETEVDISWYTSPPVAHEETIDTQSEPRKTKGEGCVAVPYLKEEVVDIPLNDESYATYHPFPCDFCSRRFKKKANLMNHMVAHQTQRPHSCNICSSRFMRKCDLVNHQKIHSYVPNRENRRDMEETLKFNHLQSPVGKRSIKRVKNSSKSITKEKSKIQNNAAQGNLNYFKPTSYVDEDVKLLLEMTNRLHEKNTNNDKNVFKDINQTGNEERPYICNKCGRNFSRESALISHSQVHAEDTHYECEKCGHNFFTQELLKDHYMKKHDIPYVEDTSDEREEKETEQGKYTGDERFGTFHCSLCSASFHRLDLLRQHKRIHSKKEDYQQYYKCNSSMALFSTQEKLLLHLENNVNNQKHLCLLCGEQFMDQNDVEKHIQQKHRRDLPPNACHYCGKQFKDKRALQKHFWIHSNDKKYSCKKLDCPKKFHSWARLRRHMLSHNATKVVRCDECNEMFSDRRALINHRHRHFPDSSSRKFICNECGKSFGSRSSQQIHNRIHTGERPYGCRYCWKAFADGGTLRKHERIHTGEKPYECVVCPRAFNQRVVLREHIRSHHSGSTSKPGYATPIYLCPVCGIVVAESEELAMHLVKHSDDNTIRNRNPQNGNRGYKRRRKVTYEYNDHDFEQLDFFDSEKKDSETESGDSDKETSKSGSNKKIVRSKKVDPYSKFTKTFEAAMKNISSLVETKSSRKAKMISTKPKSTLKTGKKMSRRAGRKSNTSISGKQTTAAGKPRTRTLSVRATGRKNSCNESANNTSDECRSHLNSEESNIRLSMSRSKNFKYEQVSENVTEINAFPERGKKIRKPAAFQKKEIEDKKSLENEMDIKTEIKEEIVEESFSIGNDSYICGICSNVFPSKADLLFHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01308858;
- 90% Identity
- iTF_01308858;
- 80% Identity
- iTF_01308858;