Basic Information

Insect: Ricinus marginatus
Gene Symbol: -
Assembly: GCA_028565995.1
Location: JAOWBB010000001.1:2987214-3002132[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.0051 0.87 11.1 2.8 1 23 387 409 387 409 0.98

2 26 0.026 4.4 8.9 4.0 1 20 415 434 415 437 0.93

3 26 1.5e-05 0.0026 19.1 1.2 1 23 443 465 443 465 0.98

4 26 0.00045 0.077 14.4 3.6 1 21 471 491 471 493 0.96

5 26 4.2e-06 0.00071 20.8 5.6 1 23 499 521 499 521 0.99

6 26 2.5e-05 0.0042 18.4 5.3 1 23 527 549 527 549 0.97

7 26 2e-06 0.00035 21.8 7.0 1 23 555 577 555 577 0.97

8 26 1.3e-07 2.2e-05 25.6 1.9 1 23 583 605 583 605 0.98

9 26 6.8e-05 0.012 17.0 6.7 1 23 611 633 611 633 0.97

10 26 7.7e-06 0.0013 20.0 5.6 1 23 639 661 639 661 0.97

11 26 1.5e-06 0.00026 22.2 2.5 1 23 667 689 667 689 0.98

12 26 1.7e-05 0.003 18.9 6.0 1 23 695 717 695 717 0.98

13 26 6.3e-08 1.1e-05 26.6 2.9 1 23 723 745 723 745 0.98

14 26 3.4e-07 5.8e-05 24.3 3.9 1 23 751 773 751 773 0.98

15 26 1.5e-07 2.6e-05 25.3 4.2 1 23 779 801 779 801 0.98

16 26 1e-06 0.00018 22.7 7.8 1 23 807 829 807 829 0.98

17 26 2.5e-07 4.3e-05 24.7 4.1 1 23 835 857 835 857 0.98

18 26 0.05 8.5 8.0 7.9 1 23 863 885 863 885 0.96

19 26 1.4e-06 0.00024 22.3 5.6 1 23 891 913 891 913 0.98

20 26 8.3e-06 0.0014 19.9 7.8 1 23 919 941 919 941 0.98

21 26 2e-05 0.0034 18.7 8.6 1 23 947 969 947 969 0.98

22 26 1.3e-05 0.0022 19.3 7.5 1 23 975 997 975 997 0.98

23 26 0.00097 0.17 13.4 8.8 1 21 1003 1023 1003 1025 0.94

24 26 7e-05 0.012 17.0 0.3 1 23 1031 1053 1031 1053 0.98

25 26 0.0058 0.99 10.9 3.9 1 23 1063 1085 1063 1085 0.98

26 26 1.2e-07 2e-05 25.7 1.0 1 23 1091 1113 1091 1113 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.0051	0.87	11.1	2.8	1	23	387	409	387	409	0.98
2	26	0.026	4.4	8.9	4.0	1	20	415	434	415	437	0.93
3	26	1.5e-05	0.0026	19.1	1.2	1	23	443	465	443	465	0.98
4	26	0.00045	0.077	14.4	3.6	1	21	471	491	471	493	0.96
5	26	4.2e-06	0.00071	20.8	5.6	1	23	499	521	499	521	0.99
6	26	2.5e-05	0.0042	18.4	5.3	1	23	527	549	527	549	0.97
7	26	2e-06	0.00035	21.8	7.0	1	23	555	577	555	577	0.97
8	26	1.3e-07	2.2e-05	25.6	1.9	1	23	583	605	583	605	0.98
9	26	6.8e-05	0.012	17.0	6.7	1	23	611	633	611	633	0.97
10	26	7.7e-06	0.0013	20.0	5.6	1	23	639	661	639	661	0.97
11	26	1.5e-06	0.00026	22.2	2.5	1	23	667	689	667	689	0.98
12	26	1.7e-05	0.003	18.9	6.0	1	23	695	717	695	717	0.98
13	26	6.3e-08	1.1e-05	26.6	2.9	1	23	723	745	723	745	0.98
14	26	3.4e-07	5.8e-05	24.3	3.9	1	23	751	773	751	773	0.98
15	26	1.5e-07	2.6e-05	25.3	4.2	1	23	779	801	779	801	0.98
16	26	1e-06	0.00018	22.7	7.8	1	23	807	829	807	829	0.98
17	26	2.5e-07	4.3e-05	24.7	4.1	1	23	835	857	835	857	0.98
18	26	0.05	8.5	8.0	7.9	1	23	863	885	863	885	0.96
19	26	1.4e-06	0.00024	22.3	5.6	1	23	891	913	891	913	0.98
20	26	8.3e-06	0.0014	19.9	7.8	1	23	919	941	919	941	0.98
21	26	2e-05	0.0034	18.7	8.6	1	23	947	969	947	969	0.98
22	26	1.3e-05	0.0022	19.3	7.5	1	23	975	997	975	997	0.98
23	26	0.00097	0.17	13.4	8.8	1	21	1003	1023	1003	1025	0.94
24	26	7e-05	0.012	17.0	0.3	1	23	1031	1053	1031	1053	0.98
25	26	0.0058	0.99	10.9	3.9	1	23	1063	1085	1063	1085	0.98
26	26	1.2e-07	2e-05	25.7	1.0	1	23	1091	1113	1091	1113	0.97

Sequence Information

Coding Sequence: ATGAACGGGGACCAGTCAACCACCATGTCAGTGTCAGTATCTAGTGCATCTACTTGTTCAGGAACAGAGgATAATAGTCTTGTTTTGCAAAGACCTAGTGGTTCAGCTACTGATCTGCGAGTTGGTACTGTAGCTTTATCAAACGTAGCAAAGTATTGggttttaacaaatttatttcctgGTCCTATACCACAAGCGGTGTACCTCAATCATCCGCCTTGTCGGATAGGGGATGCCAAGCAAGAAGTAGATCTTAATCAACAAATTGCTCCAACAACAATGGAGGGAATGACTTTAATTCACCAGTCAACTCACTCTCAGTCTCAGATACCTGTTAGTGGAGTTCAAGCATCAATTACTTCCAACGGTGTAGCAACATTATCACTTCCATCTCTGCCTGCCTCTTCGcatatggaaataaatttaccagTTCAGCCAAGTCAGCAGGAAAAGGATGGAAAATTAGACAGAGGAACTTGTGTAACTGAAAGAGTTAGTGATAATCAGgTTCATTGCCAGGTTCAGTGCGATATTCAATCAGTAAATTCGGTACAAATGCAGCAGCCTGGCCAGCAAGGACAGCAACAATCCCAATCGTCATTGACACAAACTACGACCCAGCAGCAAATGATCCACcaacagcagcagcaacaacaGCAACAACAACAGCAGCAACAACAATCACAGGTAACTTCACATCATTCAGTGGATGCATCTAATGCAGGCAGCAGCGACCCCATAGAGGAAGGATTAAATTgtcaagaaattaaattagctGGTCAGATGGTAACAACGCAAGAAATCAAagatgaaaacaaagaaattgcTTGCAATGTTAAGGATAATCGACTAATAATGACAagCTTTCCCATGCAAGATGTTAAAGGACACATGATGGATATTCGAACTGCCGACGGTGGTGTCGTTAAAATAACTACTGACCAAGATGTAGCAAAAACAATACTTAACGCTGATATGGTTCAGAGCATGTACAAGGTGAATGTTGAAGATATTAATCAACTTTTGGCGTACCATGAAGTTTTTGGGAAACTGTCAACCGATTCACTTGTACCAGTCCAACAGAATGGAAGCAAATTACAGGAAGGAAGCAGTTCCCTACCACCGGGTGTTCCAAGTAGCCCAAATTCTGTAGGACCCTATTCTTGTGATATATGTTGCAAGATATTTCCTTTTCGATACCAGTTAATTGTCCATAGACGCTACCATTCGGAGAGGAAACCATTTACATGCCAGgtCTGTGGGAAGGCATTCACATGTTCAGCAGAACTAAGTCGTCATGGCAAATGTCATCTGGGAGGAAGTATGTTTACTTGTTCTGTTTGTTTCCATGTTTTTGCCAATGCCCCATCATTGGAGAGGCATATGAAGCGACATGCTACTGATAAACCTTATGTTTGCACGACTTGTGCTAAAAGCTTTGCGAGAAAGGAACATTTAGATAATCACATCAGGTGTCATACTGGTGAAACACCTTATCGTTGTCAATATTGTAACAAAACCTTTACTCGTAAGGAGCATATGGTTAATCATGTTCGCAAACATACTGGGGAAACTCCCCATCGTTGTGATATATGtaagaaaagttttacaaGAAAAGAACATTTCATGAATCATGTTATGTGGCACACTGGGGAGACCCCACATTCTTGCCATGTTTGTGGCAAGAAATACACACGAAAAGAGCATTTAGCCAATCACATGCGGTCTCATACAAATGATACTCCTTTTCGTTGTGAAATTTGTGGTAAAGCATTCACACGGAAAGAACATTTTACAAATCACATTATGTGGCATACGGGTGAAACCCCTCATCGTTGTGATTTCTGCTCTAAAACTTTCACAAGGAAAGAACATTTGTTAAATCATGTTCGGCAGCATACTGGAGAATCTCCTCATAGATGCGGGTATTGCAGCAAATCTTTCACCAGGAAAGAGCATCTCATCAATCATGTTAGGCAGCATACGGGCGAGACACCATTTCGATGTGAATTTTGCCCAAAGGCATTTACTAGGAAAGATCATTTAGTTAATCACGTTAGACAACACACAGGAGAAACCCCACATAAATGTCAATATTGTTCGAAAGAATTCGCCCGGAAAGATCATTTAACAAACCATGTTCGGCAGCACACAGGTGAAACTCCGTATAGATGCACTTATTGCCCTAAGGCATTCAGTAGAAAAGATCACCTGAATGAACATATACGACAACATACGGGTGAGACGCCGTATAAATGTCAATACTGCCCCAAGGAATTTTCAAGAAAGGATCACCTCAATAATCATGTGCGACAACATAcaggggAAACTCCGTTTAAGTGCCAGTATTGTCCGAAGGAGTTTTCTCGAAAAGATCATCTTACAAATCATATTCGACAACACACTGGCGAGACCCCATTCAAGTGTGATTACTGTCCGAAATGTTTTTCGAGGAAAGACCATCTAACAAATCACACAAGGCAGCACACCGGGGAAACTCCttttaaatgtcaatattGTCCGAAAAGCTTTTCAAGAAAAGACCATTTGAATGATCATGTTCGCCAACATACAGggGAAACACCGTTCAAATGCATTTACTGCTGCAAAGAATTCAGCAGGAAGGATCATTTGACCAATCATACCCGACAACATACCGGCGAGCTGCCTTTCAAGTGTGATTACTGCCCTAAAGCATTCAGTAGAAAAGATCATTTAACTGAACATACCCGACATCATACTGgtGAATCACCCCATAAGTGCCAGTATTGTACGAAATCGTTTACTCGTAAAGAACATTTAACTAATCATGTGCGTCAGCACACTGGTGAATCACCCCATAGATGTCATTTCTGTGAGAAAACATTCACTAGAAAAGAACATCTTAATAATCACGTTCGAATTCATACTGGTGATTCTCCACATCGTTGTGAATTTTGTCAGAAGAGTTTTACCCGGAAAGAGCACCTTACAAATCATCTGCGACAGCACTCTGGTGAAACCCCACATTGTTGCAATGTTTGTAGCAAACCTTTTACCAGAAAGGAACACTTAATAAATCATATGCGTTGCCATACCGGGGAGCGCCCATTTGTTTGTGGTGAGTGCGGTAAAAGTTTTCCATTGAAAggaaatcttttatttcatcaaagaTCTCACAATAAAGGGGCTACTGCTGATAGGCCTTTTCGGTGTGACCTGTGTCCTAAAGATTTCACATGTAAAGGTCATTTAGTGTCGCATCGAAGAGCGCATACCGGTGAGCGTCCACATTCTTGCCCTGATTGTGGTAAGACATTCGTCGAAAAAGGTAACCTCTTGCGACACGTGAGAAAACACCAGGAATCTGTCATTGGACACGTGCAGGGTAGTAGCGGTGGAGGAAGCGGAGTAATAGCTCCCCCTTCAGCGCCCCCTCCATTACCTGTCCTATCCAACATAACAACTTATACAGCCCAGATACTTCATCCCACTGTTGTAGTACCCACACCTAACCCAGCTCTTACTTCTTATTAA
Protein Sequence: MNGDQSTTMSVSVSSASTCSGTEDNSLVLQRPSGSATDLRVGTVALSNVAKYWVLTNLFPGPIPQAVYLNHPPCRIGDAKQEVDLNQQIAPTTMEGMTLIHQSTHSQSQIPVSGVQASITSNGVATLSLPSLPASSHMEINLPVQPSQQEKDGKLDRGTCVTERVSDNQVHCQVQCDIQSVNSVQMQQPGQQGQQQSQSSLTQTTTQQQMIHQQQQQQQQQQQQQQQSQVTSHHSVDASNAGSSDPIEEGLNCQEIKLAGQMVTTQEIKDENKEIACNVKDNRLIMTSFPMQDVKGHMMDIRTADGGVVKITTDQDVAKTILNADMVQSMYKVNVEDINQLLAYHEVFGKLSTDSLVPVQQNGSKLQEGSSSLPPGVPSSPNSVGPYSCDICCKIFPFRYQLIVHRRYHSERKPFTCQVCGKAFTCSAELSRHGKCHLGGSMFTCSVCFHVFANAPSLERHMKRHATDKPYVCTTCAKSFARKEHLDNHIRCHTGETPYRCQYCNKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHSCHVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKAFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGYCSKSFTRKEHLINHVRQHTGETPFRCEFCPKAFTRKDHLVNHVRQHTGETPHKCQYCSKEFARKDHLTNHVRQHTGETPYRCTYCPKAFSRKDHLNEHIRQHTGETPYKCQYCPKEFSRKDHLNNHVRQHTGETPFKCQYCPKEFSRKDHLTNHIRQHTGETPFKCDYCPKCFSRKDHLTNHTRQHTGETPFKCQYCPKSFSRKDHLNDHVRQHTGETPFKCIYCCKEFSRKDHLTNHTRQHTGELPFKCDYCPKAFSRKDHLTEHTRHHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCEKTFTRKEHLNNHVRIHTGDSPHRCEFCQKSFTRKEHLTNHLRQHSGETPHCCNVCSKPFTRKEHLINHMRCHTGERPFVCGECGKSFPLKGNLLFHQRSHNKGATADRPFRCDLCPKDFTCKGHLVSHRRAHTGERPHSCPDCGKTFVEKGNLLRHVRKHQESVIGHVQGSSGGGSGVIAPPSAPPPLPVLSNITTYTAQILHPTVVVPTPNPALTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01251228;
90% Identity: iTF_01308163;
80% Identity: -