Rmar022759.1
Basic Information
- Insect
- Ricinus marginatus
- Gene Symbol
- Hr39
- Assembly
- GCA_028565995.1
- Location
- JAOWBB010007945.1:1-2633[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.7e-09 7.8e-05 23.2 0.0 1 31 129 159 129 182 0.83 2 3 0.0035 31 4.8 0.0 89 140 185 241 154 247 0.58 3 3 4.3e-71 3.9e-67 228.5 0.1 193 408 231 440 180 440 0.88
Sequence Information
- Coding Sequence
- AGAGGAATGGTTCAACATGGTATGGTGGAAGATTCTGTTCATTTAGATAGCGAACGAGATGAGGAAAGAGATCCCTGTTTAGAGGATAAAATGTCATGCTTAGCCGCCGATCTTGCTCAGCATTCCGCTCTAGCTGCCCCTCCAGGCATTTCGAGACAGCAGTTAATTAATAGcccTTGTCCTATCTGCGGTGATAAAATTTCGGGCTTCCATTATGGTATCTTTAGCTGTGAGTCATGTAAAGGGTTTTTCAAAAGAACAGtccaaaacagaaaaaattatgtctgTTTACGAGGTTCACAGTGCCCCGTAACTATAGCCACCAGAAAAAAATGTCCAGCATGCAGATTtgagaaatgtttaaaaatgggAATGAAATTAGAGGCAATAAGAGAGGATAGGACTAGGGGAGGTCGGAGTACATATCAATGTTCGTATAGCGTTCCTGCTTCTTTAATACAATCCAACGAATCCGTTCAAAAACTCTCAGGCAGCCTTGCAACTGGTGAAACACTAGTCAAGCTAGAAACACCAGATTTAGGCTCACCTAATTCGAATTTAGATTCAAGACTGTTGCCAGTTCCTCAACTTTTAcagGAAATAATGGATGTGGAACATTTATGGCATTATAATGAACGTGAAATGCTTGGTTCACCATCTAGTAATCATCATTATTCACCTTCGTCAACTCCATCGTCGCCTTCTCAAAATAATCCCGAATCCAGTCCAGACTTTCTTTCTAATCTGTGCAATATTGCTGACCATCGGCtttataaaatagttaaatGGTGCAAAAGTTtgccattatttaaaaacatatcgattGATGATCAAATATCATTGTTGATCAATTCATGGTGTGAACTTCTGTTATTTTCCTGTTGTTTTCGTTCAATGTCGTCTCCTGGGGAAATTAGAGTTTCTCTGGGTAAATCAATATCATTGGCTAGAGCAAAAGATCTTGGATTGGGTCCTTGCATCGAGAGAATGTTGAATTTTACTCAACATCTTAGAAGACTTCGCCTTGACAAATATGAATACGTTGCTATGAAGGTAATAGTGCTTCTAACTAGTGATGTGAACGATTTAAGGGAACCGGAAAAGGTTCGAGCATCGCAAGAAAAAGCGCTCCAAGCATTGCAGCATTATACTCTAGCACATTATCCGGATATTCCTTCAAAATTTGGAGAATTACTGTTGAGAATTCCAGAATTGCAAAGGACGTGCCagGTTGGTAAGGAGATgttatccattaaaaataaagagggTGAAGAAGGACCTAGTTTTAATTTGCTGATGGAGCTTTTGCGAGGAGATCACTGA
- Protein Sequence
- RGMVQHGMVEDSVHLDSERDEERDPCLEDKMSCLAADLAQHSALAAPPGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGSQCPVTIATRKKCPACRFEKCLKMGMKLEAIREDRTRGGRSTYQCSYSVPASLIQSNESVQKLSGSLATGETLVKLETPDLGSPNSNLDSRLLPVPQLLQEIMDVEHLWHYNEREMLGSPSSNHHYSPSSTPSSPSQNNPESSPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQISLLINSWCELLLFSCCFRSMSSPGEIRVSLGKSISLARAKDLGLGPCIERMLNFTQHLRRLRLDKYEYVAMKVIVLLTSDVNDLREPEKVRASQEKALQALQHYTLAHYPDIPSKFGELLLRIPELQRTCQVGKEMLSIKNKEGEEGPSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01308754; iTF_01308724;
- 90% Identity
- iTF_01308754; iTF_01308724;
- 80% Identity
- iTF_01308754; iTF_01308724;