Rmar019083.1
Basic Information
- Insect
- Ricinus marginatus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_028565995.1
- Location
- JAOWBB010006858.1:82601-88169[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.7e-110 2e-105 353.3 28.8 1 300 302 593 302 593 0.94 2 3 0.0063 2.3e+02 1.9 3.6 120 171 591 642 590 651 0.90 3 3 0.083 3e+03 -1.8 4.7 132 167 624 659 604 667 0.60
Sequence Information
- Coding Sequence
- ATGTACTTTCTGAAGAAGTTCACGAATTTTGCCAACGGCAAAACCGGAAACGGCGGGATGAACGGCGGAAACGAGATGACGTCCGCGGAGGAGCGTTGCGGCACTCTCGCCGGCGCAGTTGGGGCAACGCGCGCCAAAGAAGAGACGGGAGAAGGCGCCAAAAGCTCGGGTGAAACGGCCTCCCGACATTCGGGTTCGTGTTCTCCCATTTCCTCCCGTCTCAGCATACCGGATTGCTTCTTCGAGGACCTTTCTGAAACGACCGGCTCCGATAAAGTGGATTCGACGTCTTCGGAGGAAACCAATTCTGGTTCCGATTCAAAAAGTGGAGACGAGCCAGTTCCAGTAGCGATCTTGTCATACGATAAAATCGAAAGGGCGGAAGATCGGAAGCGAGGAAAAATTATCGATTCGGGGCAAGCTACGTCTTTCGGTGCAGTTGAGGATTCGCCCAAAGGATGGTGCGGATGGGAGATTGACGTTTCGAATTTCGGAAACGAAAGCCGGTTTGAAGGAGAGCACGCAAGCTTGGAGAAATGTGAATCGAGATTGCGAATCGAAGAACCGGAAGGGGAATCGAAAAAGGGCGAGTACGACGATGAAGAGAGGCGGGAATCCGGCATCGTACTGTCGGATCTGATGGAGAAGGACCCGATTTTGATCGGATCGACCATCTGTCTCGACGTATCCGATCATTTTGAGGCGAGGGACTCGGATACCAGCGGCGTTCTCACTTCCGACGTTGGGGAAATTCGGTTTTGCAGCGCTGAAGAACAGGATCAGAGCTGCCTCTTCGGCGAATTCGATCAAACGGAAGGCGTTTTCCTTTCCGCGAGATCGAGCACGGGGGAAACATTCGCAATGGATTGCATCAAGGATTACCTGGACAAAGAAAACTATAAAGCCGAAGCCAGGCTGGCCGCTCGGCGGCAGGCTCGAGTCGAAGCGCGGGAAATTCGCTTGCGTGAGCTGGAGCGGCAGCagaaagaggaagaggaaaatgccGACAGAGCCTTCGACATGTCGTACGGAGGAGACGCCATTCTTCGCGCGGGGCGGCTCACGCCATCCTCAACTACCCTGAACGCGAGAGAGAGATCCATGGTGACAACCAATAGCTATCACTCCAGCAGAAGAAGCTCGGAAGATTCCGTAGAAGAAGGTTTCACTCTTAGAGATATCAAGCATGAATTGAAAGaggcggaagaaaaatttaagaaggcCATGATCGCAAATGCTCAGTTAGACAATGAAAAATCAGCCTTAGCATATCAAGTAGAATTATTAAAGGACCGATTTGAAGATTTAGAAGAAACACATGCACAAttaaacAGAGAGCACCGTGACAAATGCAGGGAGTTCGAACAATTAAAGAGAGCCGCGGCTAAATTGAAAGAGGATTTAAACTTGTACAAAACCAATTTGCTTGAGCGAGACAGATTGATCGCCGAATATGGGCTTGTAATTGTCGATGCCGAAGGAGAAAACGAAGAAACGCCGAAAAGAACCTTAGTCACGGTTGAGTCTGCAGAACTACTTCAGCAAGCAGGTTCTGGATCCTTAGatgTGCgactaaaaaagttttccgaggAAAGAAACGAGTTGCTGGATGAAAtcagacatttaaaattagaattagaGGAAGAAAAGAGTAAACGAATATTGGACAATAGAACTGGATATGGTTCTTTGGCTAACGGTCCTTTAGATGAGGAGACTAGCAAAATTTTGAGtgattataaattcaaattgcaaAAGGCTGAACAGGATGTCTCCACATTGCAGGCCAATGTGGCGAGATTGGAGAGTCAGGTTATTCGTTATAAAACTGCCGCCGAGTCTTCCGAAAAAGCTGAGGATGAActgaaaatggagaaaagaaAGTTACAAAgagagAATCGAGAGTCCATAGCCAGGATAGAAGAATTAGAAACGGCAAATTCTCATCTGCAGAGAAGAAtggataaattaaagaatgctAAATCAACTTTGTTGAAGGAACTCTGA
- Protein Sequence
- MYFLKKFTNFANGKTGNGGMNGGNEMTSAEERCGTLAGAVGATRAKEETGEGAKSSGETASRHSGSCSPISSRLSIPDCFFEDLSETTGSDKVDSTSSEETNSGSDSKSGDEPVPVAILSYDKIERAEDRKRGKIIDSGQATSFGAVEDSPKGWCGWEIDVSNFGNESRFEGEHASLEKCESRLRIEEPEGESKKGEYDDEERRESGIVLSDLMEKDPILIGSTICLDVSDHFEARDSDTSGVLTSDVGEIRFCSAEEQDQSCLFGEFDQTEGVFLSARSSTGETFAMDCIKDYLDKENYKAEARLAARRQARVEAREIRLRELERQQKEEEENADRAFDMSYGGDAILRAGRLTPSSTTLNARERSMVTTNSYHSSRRSSEDSVEEGFTLRDIKHELKEAEEKFKKAMIANAQLDNEKSALAYQVELLKDRFEDLEETHAQLNREHRDKCREFEQLKRAAAKLKEDLNLYKTNLLERDRLIAEYGLVIVDAEGENEETPKRTLVTVESAELLQQAGSGSLDVRLKKFSEERNELLDEIRHLKLELEEEKSKRILDNRTGYGSLANGPLDEETSKILSDYKFKLQKAEQDVSTLQANVARLESQVIRYKTAAESSEKAEDELKMEKRKLQRENRESIARIEELETANSHLQRRMDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01308024;
- 90% Identity
- iTF_01308024;
- 80% Identity
- iTF_01308024;