Rarc026429.1
Basic Information
- Insect
- Ricinus arcuatus
- Gene Symbol
- Zfhx4
- Assembly
- GCA_027475445.1
- Location
- JAOXJT010000005.1:1443193-1451531[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 9.7 2.1e+03 0.7 0.2 1 9 328 336 328 351 0.76 2 15 0.021 4.5 9.1 0.2 1 23 385 408 385 408 0.92 3 15 0.019 4 9.3 2.5 1 22 487 508 487 511 0.92 4 15 0.036 7.6 8.4 0.6 1 23 523 548 523 548 0.94 5 15 0.0081 1.7 10.4 1.3 1 23 565 587 565 587 0.97 6 15 0.39 84 5.1 1.1 3 23 595 616 593 616 0.87 7 15 0.00059 0.13 14.0 4.5 1 23 701 725 701 725 0.92 8 15 0.0078 1.7 10.5 0.7 1 22 745 766 745 769 0.89 9 15 0.00076 0.16 13.6 0.2 1 23 818 842 818 842 0.93 10 15 0.015 3.3 9.6 3.6 3 23 924 944 923 944 0.96 11 15 0.41 88 5.0 2.3 2 19 1067 1084 1066 1089 0.91 12 15 0.00012 0.026 16.2 2.5 1 23 1736 1758 1736 1758 0.99 13 15 0.00053 0.11 14.1 0.3 1 23 1854 1876 1854 1876 0.98 14 15 0.0024 0.52 12.1 0.4 2 23 2019 2041 2018 2041 0.97 15 15 0.071 15 7.5 2.6 2 23 2274 2297 2274 2297 0.89
Sequence Information
- Coding Sequence
- ATGCGAAGCGTGGTTGCCGGAGGAGCGCCTCGTCATGCGCCGAGCTCGCTTTGCCACACGAGTTTTCCACCCTTCCCGAGCTCGGGGGGAGGAAAATGGGGTCGAACTCGGGATTCCGGGCCCCCCCCCGCGAGCTTTTCCCGGTTCCGATCAAGGCGCGCCCGCGGACCGGACCCGGAACCGAATGGAGAACCTTGCGATTCTCGCTGTGGTCAGCGCCGGAAACGTTTGACGAGGTTCTCTGGGAAAATTGAAATGCCTTCGACGGGTTTTCCGTTATTTCATCCGCGATTCAGGACCGAAGTCGCGAGCACCTCGACGCGAAATTCCCGTTCGACCTCAATGCGAGACCGGGAAAATTTTCAGGTGGCACCGCACCGCAGAAAGCTCGCCGATTTTCGCGTTCGGGGATGGGTTTTCCCCGGTTGCGCTCGGCCGCAGCAGAAGACGTTTTTTTTTAATGCTCGCTTGGTGTGGTGCGCGATTTTGACGCTGTCGAAAGTGCGTTTTGAAGCCCCGCTGGAGACCCTTTTCTGCCACCGACCGAAAAATTCCCCGTCAATTCGAAATTCCAGCCAGTGGTGGCCGTTTCTGTCATTCATCGTTTTACTTTCCGGCCAAAGAATGTTTTGCTGGACAAAAGCCGCGGCCGATGGCAGCACTTTGACCGCAAGGAAGAAGGAAGTTTTGACGGCCGATCGTTGCATCGGCGTAGCTGTTCCCCGTGCAGTTTTCTGTCGCCGGTTTTGGGTCGGGAACAAACGGAAGAGTTTTCATTTTCCGTCCGCGATCTTTTGGGCTTGCTGTCGGAGAAATGGCGATGACGTGGCGCCTGCCTCGGCCTCGCGGAGGCCACTCGGTGCGATTGACTTTTGTGTTTCTTTTCTTGCAGAGAGGAAGGACGGCCAGTCCGTTGGCAGGGAAGGCGGTAAGCAGGAGAGCGCGGAAGACGAAATTGGCGCGTCCTCCGATGCGCAGGCCCACGTGTGCCCCTATTGTAATTACATGAACACCTCGGAAATACGAATACAGGCTCACGTTCTGGCACAGCATTCGCAGTCCGACGGCGGCGGTCGGAGATCGTCGTCTCCGCCTCCGTCGGTTTCGACCCAGCAACAGCAGCAGCAACAGCAGCAGTCCCAATCGAAGGATTTCCTCTGCCCGCTGTGCCAGGACGGCTTTCGCGAGCGCTCCTCTCTCGAACGTCACGTTATGCAAATTCACAGCGTCAATTCGGAAGGCCTGCAAAGACTTTTGATGCTCGTCGATCAGTCGCACTGGCTGAACGCGGTGAATCGCAGCTCGTCACCGCATCAACCGAATCACATGAGCCCCGGCAGCAGTGGCGGAAGCACCTCTTCCCACTGCAAAGAACTCGAGAAGCCGACGGATTCGACGGAGGAACGCGACGAGCCAACGCTTCTGTCTCCCGTCTCGGAGGAAAACCTGGACGAGGAGTATCGCTGCCAGACTTGCTTCAAGAATTGCAAAACGCTCGACGACTTGTACGTTCATCAAAACGAGCTGGGCCACATCGAGATCAAGCAAACCCCGACCGGGCCCGGTTACGTGTGCTGGAAAAAGGGATGCAACCAATACTTCACGACCATCAACACGCTTCAGCTGCACTACAGGGAAATCCACATAAAAAACCAACAGAACATGTCCGTTTCCGAAAAGCACGTGTACAAATATCGGTGCAACCAATGCAGCCTCGCCTTCAAGACGGTCGAGAAGCTTCAGCTGCACTCCCAGTACCATCTTATTAGAGATGCCACGAAGTGCATACTCTGCGGCAGAAACTTCAGATCCATCATCTCCCTTCATAAGCACGTCGAACTGAACCATTCCGATCTCTCCGAAGAGGAGCTCAACAACTACAAACAGAGCTTGATGAGCAATCCTTTGATACTTGCTAGTCTCAGCGGAAACATTCTCGACCCGTCCCTGAACGAGATTTTGAAGAAGGAGTCCCTGGAGGACGAGGAGGAACCCGTCGACGACAACAGCGACGATTCCTACAAAGAGCAGCAATTCCTCGAGGACTACCTCAACAGCCAGTCAATAGCGGAAGACAGCTACAAAGATCCGAACCGCAAGTACAAATGTCACAAATGCAAGCTGGCGTTCACGCGCCAAACCTATCTTACCAGCCACAACAAGACGCTGTTGCACAGGAAAGGGGAGAAAATGAACTACCCGATGGAGAAGTACATGGATCCGAACCGACCGTTTAAATGCGACGTCTGTAAAGAAAGCTTCACCCAGAAGAACATTCTCCTGGTTCACTACAATTCGGTGAGCCACCTGCACAAGCTGAAGAAGGCGATGCAAGAACAGCAGACGAACAGTAACTCGGTACCCACTGCTCTGCTTGGGGTGACGTCGCCTCCGTCATCCCTGAACCTCACTAAATCGTCCGTGTCCTCGGAAGAAGAGGACAAGAAACCGTACAAGTGCAACATCTGCAAGGTGGCTTACAGTCAGGGTTCGACGCTGGACATTCACATGCGATCGGTCCTGCACCAGACGAGAGCGTCAAAACTCCAGGATCTCGTCATTTCCGGTCAGATAGACATTAACAAGCCGCTGTTCGAGCAGCCGCTGCAGAAGGCCGACGGCAAAAAAGCGAACGAGTTCATCACCTCTCCTCCCGGGCAGAAACTTTTCGCTTCTCCCGCCTCGAGCAGCTCCTCCAATCAGCAGGGGTCCTCGCCCGTCAATCCCATCTCGCCGAAACCGGACGGGGAGGAGAAGGAAGTTCCTTCGTGCCAAAGATGCAACGCCTGCTTCCACACCCAAGAGCAACTGGCGGCCCATCAGCAGCTCCATTGCCTCTTCGGAAGCCCCATGAGCCTGTTTCCGGCGCTGACGAACTCCACTCCGAACCGCGTTCTGTCACCGCCGCCTCCGAAGTCCCCGGCAACTCCAGACGAACTCAACAGGTTGAACCTTCCCAACAAGAAATGCTCTCAAATGTACAAGCACTTGCTCGAAAGCTTCGGATTCGATCTCGTGATGCAGTTCAACGAAAACCATCAGAGGAAGCGGAAGGAAAGGGAAGAGGCGGAGAAGCTGGAAAAAGAGAAGGAATTACTGAGTCAGAGCGAAGCCGTCGACCCGCAGGAGAGCGACGAATTTCGCGACAAAACCGCGGAAGAGGGCGACACCGACCTACCGGAAGTGAATTGCAAAAGCACTTGCCAGCACTGCCAGAAGCAATTCTCGAGCGTGTGGGTGCTCAAAGCCCACTGCGAAGAGGTTCACAAAGAGCTCGTGCCCATCGATTTCTTGGAGAAATACGCGGAAGAATTTAAAACGGAATACGAGAAGAAAACGGCCATTGCGACGACGGTCACTACGACCACGACAACTGCGATATCCACGCCGAACACGAGCACCTCCATGTCGACGTGCACGGTCACCAGCTCCGGCATAGACGTGACCGGAGACAAGGACGAGTCCAAAGACGGCAAAAACGACGAGGTGACGCCTCCGACGGCGTCCTCGACCCCCGCCAGCAGCACCGATTCGATTCCCACAGCGATTTCCGGCCTCAGCCCCGGGGTCGCGAATCCCATTCAAATGTCGCTCGCCCAGCAAATGAACGAAATGCAGGCGGCGTTCAACGCGATGGCCGCGTCCCAGCTTCAGCAGCAACTGCAGCAGTTCAGTCCGATGATGATGGGGATGGCCGGTCTCGGCATGGGCCTGCCCCTCGGACTCAACATGCCCGCTCTCGCGGCGATGAACCTCCAGCCACCTCTCGTTCCGATGATGATGCCACCGCCTCCGTTCGATCCCGTCTCTCTTGCGCAGGCCCAGGCTCAGGCCCAGGCACCTCCGATATTTCCCTCGCAGGGCGGGATCGATCCGGCAGCGGCGCTGATCGCCAAGCAGCAGCAGCACCTGCTTCAGCAGCAGCAACAAGCGGCATCCGCGGCCCAGCAGAAGAGAGCGCGGACCAGAATCACGGACGACCAACTGAAGATCCTCAGAGCTCACTTCGACATTAACAACTCGCCGTCGGAGGAGCAAATCCACGAGATGGCGGCGCAAAGCGGACTGCCGCCCAAAGTTATAAAACATTGGTTCCGGAACACTCTGTTTAAGGAGCGCCAGCGAAACAAAGACTCCCCGTACAATTTCAACAATCCTCCTTCCACGACGCTGAATCTCGAGGAGTACGAGAAAACGGGCGAGGCAAAGGTGATGCCCCTGAGCGGCAGCGGCGACGAGCAACTCCCGTCCGGATCTCAGAAGGAAAGCTCCCAGAGACCCCCTTCGGCGGCCTCCTCCTCGAGTCCGGTGAAGAAAGAGTCCTTGGCCGGCAAAGTCGGCGCGGTGCAAGGGCAGTCGCAGCAGCAGGCGAATCAGCAACAGGTTTCTCGCACTCCGCCGCCGCCCTTTCTCGACCCCCCGCAGATAAAATCGGAGCCGCGGGATCGGGAGCTGGTGACGCCGACGCACGAAACCGAAAAGTTCGGTTTTCTGGACGAACATCGCGGACGAGTGAGGAGGGACAGCGTCGACAGCTACGACGAGAAGCCGAACTTCCACAGCCCCGTCCACCACTTTCCTCCGCAGAGTCCGCACTCTTTGAACCACAACGAAGCTCAAGTTCCTCAAAACTTATCAAGTTCCTCTCCTAATGGCCTTAGTTTATCTAATATTATGCCGCAAGTCGGCCCCGAATCGCTCGCCGGGAACCTGCCGGCAAACTTATCCATGTCTCAGAGCAACATGTTGCCTCCGAAGTTGACACCTCCGAACTTCGCGTCTCCGAATCAAGTTCCTAATTCAAGTGCCATTGTATCGATGCCGACTTCGAGATCCGTCTCGCCGGCCCGCTCGAACGCACAAGACTTCTTCCCCCATTCGGCGCTCGGGGGCGGCGGAGGAAACAGCAACGGCAGCAACTCCTCGGGAGGATCGACCTCGGGGAAACGGGCGAACAGAACGCGATTCACGGACTACCAGATCAAAGTGCTCCAAGAATTCTTCGAAAACAACGCGTATCCCAAGGATGACGATCTCGAGTATTTGTCGAAGCTTTTGAGCCTCAGTCCGAGGGTGATAGTCGTGTGGTTCCAGAATGCTCGGCAGAAGGCTAGGAAGGTGTACGAGAACCAGCCCCCCGTGGAGCCGGCTCCGGGGGCCGACGGTAACGAAGCGGGTCGGTTTCAGAGAACTCCGGGACTGAATTACCAATGCAAGAAATGCCTGCTGGTATTCCAGCGGTACTACGAGCTCATAAGACACCAGAAGACTCACTGCTTCAAGGAAGAGGACGCGAAGAGATCGGCCCAGGCTCAGGCCGCGGCGGCGCAGATAGCGGCCGTTTTGTCCAGCGAGGACTCCAACTCGAGCACCATCGAGAACCAGCAGCAGCATCAGAACCAGCCGGGCATGTCGACCTCCTCCTCCATACAGAGCAATCCCCCGACGCCTTCCGCGCCCGTCACTCCCACGCCGTCGACGCCGTCGCAAGTCCTTTACCCACCTTCTCCGGCTCCTTCCGGCACTCCGACTCCCGAAGCCAGCGGCAAAGATGGAACCTTCCAGTGTGATAAATGCAACTTGGTGTTTCCGCGTTTCGATCTCTGGCGGGAGCACCAGCTAGTCCACATCATGAACCCGAATCTGTTTCCTACCTATCCGCCGGACAGCCCGTTCGGGATCCTTCAGCAGCACGCTCAAATGCAGCACCAGCAGCAGCTCTCCGGCATGAGCGTCGACCTGTCCATCAACTCGCAGCAGCACTCCCTCGCCGCGATGCTCTCGAGCAAGAGAAAATTTGACGATTACGACGACATGTCCGACACCGGGGGCGACCAGCCGAAGGACAAGAGACTTCGCACGACCATATTGCCGGAGCAGCTGGATTACCTTTATCAGAAGTACCAGATCGAGAGCAATCCGAGTCGAAAGATGCTCGAGAGCATTGCTCGAGAAGTCGGGCTGAAGAAAAGGGTGGTTCAGGTGTGGTTCCAGAACACCCGCGCCAGAGAGAGGAAGGGCCAGTTCAGAGCGCACGCGCAAGTCATAAACAAGCGCTGCCCCTTCTGTCCGGCTCTGTTCAAAGTGAAATCGGCGCTGGAAAGCCACTTGCAGACAAAGCACTCCGATCAGTACGCGAGGGGAGAAATCAACATCGATTCTTTGCCGGACGAGGAAGTCAGCATGGAATCCGTGTCCAACTTCCAGCAGGGCAACAGCAACTCGAACTCCGGGATTCCTCAGCTGTTCTCGTCTTTCAACTCGGACATGGACTCCATCAAAAAATATTACGAGGAATCCATGAAGCGATACATGAGCGAGCTGCAGCAGAACCAGAACGGCGAAAAATCGGAGGAACGGGGAGAGTATCCCCTGGACCTGAGCAAACCGGTCGACCTCAGTCGCCAGATGAAAGTGAGCATGGACGACACGTCGAGAATCGTCGACGTCGGTCCTCTCACGGATCTCAGCGAGAAAAGCCTCAACGACGACGATTCCACTTCGGAAACGACGGAAATGTATTATTACGACGACAGCAATCCCGTATCCCCGGCCTCGAGCACCCAGAGCAACCACCAAAGGCAAAACAAAAGGTTTCGGACGCAGATGAGCAACACCCAGATCAAGGTGATGAAGTCCCTCTTTAACGATTACAAGACTCCGACCATGTCGGAATGCGAAGTTCTCGGCCGCGAAATCGGGCTCCCCAAACGGGTTATCCAGGTATGGTTCCAAAATGCCAGGGCCAAAGACAAGAAAGCGAAGATTTCGGGACAGAAAGCGGGCGAGGAGAGCATCGCCGGTGAGAAACTAGTCGAAGAATGCAAATTGTGCGATTTCAAGTACTCGCACAAGTACTCTGTCCAGGACCACATCTTCACCAAATCTCACATCGAGAACGTCAAGTCGAGCGTCGAGCAGGAGACGACCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGAGACCAGGACTTCACCGTGCCCCCGGTGCCGGGATCCAGCTCGGCGGCGGCGGCGGCGGATCAAGCGTCTTCGGTCGTCAATCACAACAACAACAACACCACCACGAACCAGCATCTCGCCCAGCTGCAGATACTCCAAATGGCGGCAGCGATGAAGGACAAAATGCCCAGGCCCGAGGAGATGGCCCAGATCCAGATGCTCCAGCTCGCGGCCGCCTCCGGCCTGATGATGAAGACGGACGAGAAGAAGATGGACGACATAGCCCACATCCAGCTTCTCCAAATGGCAGCGGCAAGCGGACTGCTCCCCAAGATGGACCCATCCGCCAGCAAAGAGCTCAAGGACGAGATGGCCCTCCTGCAGCAGCTGTACACCCTTCCGGGATTCATGCATCCATCCATGGTCAACTCTTCGGCCGGTGAGTCTGAATTTTAG
- Protein Sequence
- MRSVVAGGAPRHAPSSLCHTSFPPFPSSGGGKWGRTRDSGPPPASFSRFRSRRARGPDPEPNGEPCDSRCGQRRKRLTRFSGKIEMPSTGFPLFHPRFRTEVASTSTRNSRSTSMRDRENFQVAPHRRKLADFRVRGWVFPGCARPQQKTFFFNARLVWCAILTLSKVRFEAPLETLFCHRPKNSPSIRNSSQWWPFLSFIVLLSGQRMFCWTKAAADGSTLTARKKEVLTADRCIGVAVPRAVFCRRFWVGNKRKSFHFPSAIFWACCRRNGDDVAPASASRRPLGAIDFCVSFLAERKDGQSVGREGGKQESAEDEIGASSDAQAHVCPYCNYMNTSEIRIQAHVLAQHSQSDGGGRRSSSPPPSVSTQQQQQQQQQSQSKDFLCPLCQDGFRERSSLERHVMQIHSVNSEGLQRLLMLVDQSHWLNAVNRSSSPHQPNHMSPGSSGGSTSSHCKELEKPTDSTEERDEPTLLSPVSEENLDEEYRCQTCFKNCKTLDDLYVHQNELGHIEIKQTPTGPGYVCWKKGCNQYFTTINTLQLHYREIHIKNQQNMSVSEKHVYKYRCNQCSLAFKTVEKLQLHSQYHLIRDATKCILCGRNFRSIISLHKHVELNHSDLSEEELNNYKQSLMSNPLILASLSGNILDPSLNEILKKESLEDEEEPVDDNSDDSYKEQQFLEDYLNSQSIAEDSYKDPNRKYKCHKCKLAFTRQTYLTSHNKTLLHRKGEKMNYPMEKYMDPNRPFKCDVCKESFTQKNILLVHYNSVSHLHKLKKAMQEQQTNSNSVPTALLGVTSPPSSLNLTKSSVSSEEEDKKPYKCNICKVAYSQGSTLDIHMRSVLHQTRASKLQDLVISGQIDINKPLFEQPLQKADGKKANEFITSPPGQKLFASPASSSSSNQQGSSPVNPISPKPDGEEKEVPSCQRCNACFHTQEQLAAHQQLHCLFGSPMSLFPALTNSTPNRVLSPPPPKSPATPDELNRLNLPNKKCSQMYKHLLESFGFDLVMQFNENHQRKRKEREEAEKLEKEKELLSQSEAVDPQESDEFRDKTAEEGDTDLPEVNCKSTCQHCQKQFSSVWVLKAHCEEVHKELVPIDFLEKYAEEFKTEYEKKTAIATTVTTTTTTAISTPNTSTSMSTCTVTSSGIDVTGDKDESKDGKNDEVTPPTASSTPASSTDSIPTAISGLSPGVANPIQMSLAQQMNEMQAAFNAMAASQLQQQLQQFSPMMMGMAGLGMGLPLGLNMPALAAMNLQPPLVPMMMPPPPFDPVSLAQAQAQAQAPPIFPSQGGIDPAAALIAKQQQHLLQQQQQAASAAQQKRARTRITDDQLKILRAHFDINNSPSEEQIHEMAAQSGLPPKVIKHWFRNTLFKERQRNKDSPYNFNNPPSTTLNLEEYEKTGEAKVMPLSGSGDEQLPSGSQKESSQRPPSAASSSSPVKKESLAGKVGAVQGQSQQQANQQQVSRTPPPPFLDPPQIKSEPRDRELVTPTHETEKFGFLDEHRGRVRRDSVDSYDEKPNFHSPVHHFPPQSPHSLNHNEAQVPQNLSSSSPNGLSLSNIMPQVGPESLAGNLPANLSMSQSNMLPPKLTPPNFASPNQVPNSSAIVSMPTSRSVSPARSNAQDFFPHSALGGGGGNSNGSNSSGGSTSGKRANRTRFTDYQIKVLQEFFENNAYPKDDDLEYLSKLLSLSPRVIVVWFQNARQKARKVYENQPPVEPAPGADGNEAGRFQRTPGLNYQCKKCLLVFQRYYELIRHQKTHCFKEEDAKRSAQAQAAAAQIAAVLSSEDSNSSTIENQQQHQNQPGMSTSSSIQSNPPTPSAPVTPTPSTPSQVLYPPSPAPSGTPTPEASGKDGTFQCDKCNLVFPRFDLWREHQLVHIMNPNLFPTYPPDSPFGILQQHAQMQHQQQLSGMSVDLSINSQQHSLAAMLSSKRKFDDYDDMSDTGGDQPKDKRLRTTILPEQLDYLYQKYQIESNPSRKMLESIAREVGLKKRVVQVWFQNTRARERKGQFRAHAQVINKRCPFCPALFKVKSALESHLQTKHSDQYARGEINIDSLPDEEVSMESVSNFQQGNSNSNSGIPQLFSSFNSDMDSIKKYYEESMKRYMSELQQNQNGEKSEERGEYPLDLSKPVDLSRQMKVSMDDTSRIVDVGPLTDLSEKSLNDDDSTSETTEMYYYDDSNPVSPASSTQSNHQRQNKRFRTQMSNTQIKVMKSLFNDYKTPTMSECEVLGREIGLPKRVIQVWFQNARAKDKKAKISGQKAGEESIAGEKLVEECKLCDFKYSHKYSVQDHIFTKSHIENVKSSVEQETTGGGGGGGGSGGGGDQDFTVPPVPGSSSAAAAADQASSVVNHNNNNTTTNQHLAQLQILQMAAAMKDKMPRPEEMAQIQMLQLAAASGLMMKTDEKKMDDIAHIQLLQMAAASGLLPKMDPSASKELKDEMALLQQLYTLPGFMHPSMVNSSAGESEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01307852;
- 90% Identity
- iTF_01307852; iTF_01308927; iTF_01308516;
- 80% Identity
- iTF_01307852;