Rarc004488.1
Basic Information
- Insect
- Ricinus arcuatus
- Gene Symbol
- Hr39
- Assembly
- GCA_027475445.1
- Location
- JAOXJT010000004.1:3559025-3564538[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.019 4e+02 1.4 5.7 41 176 171 309 159 342 0.57 2 4 8.8e-09 0.00019 22.2 0.0 1 31 499 529 499 554 0.83 3 4 0.0068 1.4e+02 2.8 0.0 89 147 555 602 530 614 0.60 4 4 8.4e-71 1.8e-66 226.5 0.0 193 408 601 810 551 810 0.89
Sequence Information
- Coding Sequence
- ATGGACACTACTGCCGCCGGTGGTACGGCTTGGTCCCAAGCGACCACCACAAGGTTCTCCTCTCAAGGTTCACCGACGAAAGGGGTAGTGTCAGTTCTTGTCGACCCGAGAAATGAGGGTCCCAACGTATTGACTATTAAGGAAGAACACGTTGTTGGAAGGGGAACTTCGGTTACTTGTGGTGGAGTGACGGTCACATCCATAAACGTCACCCACGAATCCGACccaacgcactcacaagatgCTGCAAATATAAAGTATTATGAAAAAGTAAATGGTGATGTGATTGTGAAATGTGAAGTACCAAATTCTGGAGCGCTGGAAGATTCAGGATCAGATTCAGAAGTCAGTAAAATTGATTTTAGAGGTGTTCATCTACGAATGAAAAAGAAACGGAGTAAAAGAAATAATGAGGAATCTCAGGATAGTTTCGGAAATGAGGAACCAGAGAGGCCAATGTCTTGGGAAGGAGAGCTCTCCGATGCAGAAATGTCAATAGTCACTGGAGTAAAGATGGAAGGAGAAGACAATGGAGAAGGGGATCAGCTTTCTCCTCAACACGCTAATAAACCAATAAATTTTGCAGACAGCATTAACGAATCAGTATTGGAGCAAACAAGACTCAACCAAGACCAGCAAATTAATAATGAAGCAGTCGGTGGATCTACAAATGCAAGAGAATTACCTCTTTTAGTGGACAAACTATTGGGTGGTTATAGTACCCCTTCCAACAGTCCGATCCTTCAACATAGACATCAACATCACTCATTAACGAAACAACATTCACACTTCAGTACTTTACCACCTAATCCTTCTCCAGATTCTGCTATCCATTCTGCTTATTCATATTCATCACCTGCTGCTTCTCCTGCTGCTTCTCGGCATCTTCCGTCAAGTGGTTTTTCGTCTCCGTTTACACCTTCCCTTTCAAGGAACAATTCAGATGCAAGCCAGTATGGTGGTTCTCAACATTCTTCTTGCTATAGTTATAACAGTGAGAATTTCTCCAGTCCAACTCATTCACCCGTTCAAAGCAGGCACTTACATGGATATTCTAGGGTTGATGGCAGTCCTTTACATGCAGTTACAGGTGGTCTGGTATATGGTTCAAGAGGAATGGTTCAACATGGTATGGTGGAAGATTCTGTTCATTTAGATAGCGAACGAGATGAGGAAAGAGATCCCTGTTTAGAGGATAAAATGTCATGCTTAGCCGCCGATCTTGCTCAGCATTCCGCTCTAGCTGCCCCTCCAGGCATTTCGAGACAGCAGTTAATTAATAGCCCTTGTCCTATCTGCGGTGATAAAATTTCGGGCTTCCATTATGGTATCTTTAGCTGTGAGTCATGTAAAGGGTTTTTCAAAAGAACAGTCCAAAACAGAAAAAATTATGTCTGTTTACGAGGTTCACAGTGCCCCGTAACTATAGCCACCAGAAAAAAATGTCCAGCATGCAGATTTGAGAAATGTTTAAAAATGGGAATGAAATTAGAGGCAATAAGAGAGGATAGGACTAGGGGAGGTCGGAGTACATATCAATGTTCGTATAGCGTTCCTGCTTCTTTAATACAATCCAACGAATCCGTTCAAAAACTCTCAGGCAGCCTTGCAACTGGTGAAACACTAGTCAAGCTAGAAACACCAGATTTAGGCTCACCTAATTCGAATTTAGATTCAAGACTGTTGCCAGTTCCTCAACTTTTACAGGAAATAATGGATGTGGAACATTTATGGCATTATAATGAACGTGAAATGCTTGGTTCACCATCTAGTAATCATCATTATTCACCTTCGTCAACTCCATCGTCGCCTTCTCAAAATAATCCCGAATCCAGTCCAGACTTTCTTTCTAATCTGTGCAATATTGCTGACCATCGGCTTTATAAAATAGTTAAATGGTGCAAAAGTTTGCCATTATTTAAAAACATATCGATTGATGATCAAATATCATTGTTGATCAATTCATGGTGTGAACTTCTGTTATTTTCCTGTTGTTTTCGTTCAATGTCGTCTCCTGGGGAAATTAGAGTTTCTCTGGGTAAATCAATATCATTGGCTAGAGCAAAAGATCTTGGATTGGGTCCTTGCATCGAGAGAATGTTGAATTTTACTCAACATCTTAGAAGACTTCGCCTTGACAAATATGAATACGTTGCTATGAAGGTAATAGTGCTTCTAACTAGTGATGTGAACGATTTAAGGGAACCGGAAAAGGTTCGAGCATCGCAAGAAAAAGCGCTCCAAGCATTGCAGCATTATACTCTAGCACATTATCCGGATATTCCTTCAAAATTTGGAGAATTACTGTTGAGAATTCCAGAATTGCAAAGGACGTGCCAGGTTGGTAAGGAGATGTTATCCATTAAAAATAAAGAGGGTGAAGAAGGACCTAGTTTTAATTTGCTGATGGAGCTTTTGCGAGGAGATCACTGA
- Protein Sequence
- MDTTAAGGTAWSQATTTRFSSQGSPTKGVVSVLVDPRNEGPNVLTIKEEHVVGRGTSVTCGGVTVTSINVTHESDPTHSQDAANIKYYEKVNGDVIVKCEVPNSGALEDSGSDSEVSKIDFRGVHLRMKKKRSKRNNEESQDSFGNEEPERPMSWEGELSDAEMSIVTGVKMEGEDNGEGDQLSPQHANKPINFADSINESVLEQTRLNQDQQINNEAVGGSTNARELPLLVDKLLGGYSTPSNSPILQHRHQHHSLTKQHSHFSTLPPNPSPDSAIHSAYSYSSPAASPAASRHLPSSGFSSPFTPSLSRNNSDASQYGGSQHSSCYSYNSENFSSPTHSPVQSRHLHGYSRVDGSPLHAVTGGLVYGSRGMVQHGMVEDSVHLDSERDEERDPCLEDKMSCLAADLAQHSALAAPPGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGSQCPVTIATRKKCPACRFEKCLKMGMKLEAIREDRTRGGRSTYQCSYSVPASLIQSNESVQKLSGSLATGETLVKLETPDLGSPNSNLDSRLLPVPQLLQEIMDVEHLWHYNEREMLGSPSSNHHYSPSSTPSSPSQNNPESSPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQISLLINSWCELLLFSCCFRSMSSPGEIRVSLGKSISLARAKDLGLGPCIERMLNFTQHLRRLRLDKYEYVAMKVIVLLTSDVNDLREPEKVRASQEKALQALQHYTLAHYPDIPSKFGELLLRIPELQRTCQVGKEMLSIKNKEGEEGPSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00362587;
- 90% Identity
- iTF_01308079; iTF_01308056;
- 80% Identity
- iTF_01308079; iTF_01308056;