Rarc007442.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ricinus arcuatus
Gene Symbol
TFIP11
Assembly
GCA_027475445.1
Location
JAOXJT010000009.1:4366032-4371060[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 0.012 2.5e+02 2.3 0.0 178 206 201 230 182 246 0.88
2 3 2.3e-91 4.9e-87 293.3 21.7 1 275 387 657 387 657 0.97
3 3 0.74 1.6e+04 -3.6 0.0 158 189 670 700 665 706 0.66

Sequence Information

Coding Sequence
ATGTCGGATGAAGTCGAGGAATTTGAAGTAACGGAATACGATTTAGAAAATGAATTTAACCCAAATCGACGCAGGAAAAAAATCAGTAAAAGCGAACGAATTTACGGTATATGGGCCGACCACGACAGTAGTGGAGAGGACGACGGAGATTGCAAAAGAGCAAGTTTCAGAGGATCGAAAAAACCAAAGAACTACAACGCACCCATAAGCTTCATAGCTGGTGGAACCCAACAAGCAGGAAAGAAGCCAGAAGATTCTAAAAAGGAATCAGATGAATCTGATAACAATGAGGAAAATGCAGATAATGCAGGATCAAAAAAATCAAGATTAAACCTGAAAGACACTTCATCAGAAGAAAGTGAAAATGAAGTTCCATCAAATGAAATAGCCGGAATGAGGAGGAAAAAACATCAAATAGAAGGTTCATTGATGCAGAAAGGTGTTGGGAATTGGGAGAAACATACTAAAGGCATTGGAGCAAAATTACTGCTACAAATGGGCTATGAACCAGGTAAAGGCTTAGGGAAGCAATTGCAAGGTATTAATACCCCAATAGAAGCAAAGCTAAGAAAAGGTAGAGGAGCCATAGGTGCTTATGGACCTGAGGTATCACAAAAATTAGCTGATATTATCACTAATGACAAGTCGAATAAAAAAGGAGTCACAGAAAAGCTTTCAAGGTGGAGAAAGGATGATGCAACAGCAAATAAAAGAGTTAAATATATATATAAAAGTATTGATGAAGTCATTGAACAGGGAAAAGATAACTCATCTGCAAAAGACAGAAGCGCTTTATCAAAGGTGAAAGTGATTGATATGACAGGACCTCAACAAAGAGTTCTTTCTGGTTATCATGCCATATCCAGGCAGCAACGACCATCGGATGAATGGGAAACAAGAAAAGAACTGAAATTTGCGAATTTTGCTTTGCCAGAACTATTACATAATTTAAATCTTTTAGTTGACATGTGTGAGCAGGATATAATTCAAAATGATAGAAAATATAAATTTGCAAGTGATAGAATTGTAGCTTTACAGCATGAAACTTTGAATTTATGTAGAATATGTGAGAATGAAGCTCAACAGGTGAATAAATTGGAAAAACTTATTTCTATAATTGAAGAATGTGTAACCTCAAGTCAAAATAAAAGTCTAACATTAGAAAAAGCAGCGTCATCTTTTAGAGAATTGCAGAAAGAATACTATGAGGAGTATAAATTATACGAAATGTCAGAATTAGCAATTTCCCTTGTTATACCGCTTATCAAAGAACATCTGGAACATTGGCAACCCTTGATAAATCCTGCGGAACCAGTCGAAATGCTTAAAAACTGGAAAAATATTTTTGAACACGATGCTGCTCACGCGACATCGAACATGAACAATCAAGATCCATTTGGAAAATTATTATGGCATGCTTGGATTCCATCAATTAGACTTTGCATTTCGAACTGGGACTGCAAAAAACCAGAGACAGTTTTGAGATTGCTAGAAATTTGGATGCCTTTAATTCCTCCGTGGATAGCCGAAAATATCTTAGAGCAACTTATTTTACCTAGAATAACGTTACATGTTCACGAATGGGACCCAATGACAGACACGACACCCATACATGCATGGATTCATCCCTGGCTCCCGTTACTAAGTGCCAGTTTAGAATCTGTAATTTATCCTATGATTAGGCATAAGTTAAGTTTAGCATTAGCTGCTTGGCATCCAAGCGATAGATCAGCAAAATTTATGCTACTTCCGTGGAATAATGTTTTTAGTAAAGGCGACATGGACTCGTTTCTCGTAAGAAATATTCTACCCAAACTGGCTCAAACTCTGGATGAGTTTATTATTAATCCGCAACATCAGATTTTGGATGAGCACTGGAAATGGGTAATGGAATGGGAAGATTTGATACCAACACATTCCTTGGCAGGAATTCTCGAGAAACATTTCTTTCCCAAATGGCTACAGGTGCTCTCAGTTTGGTTGAATCATTCTCCTAATTACGATCAAGTCACTAGTTGGTATATTGGCTGGAAAGGACAATTTTCCGAAGCTCTACTCAAACAGCCGAACATCAAGGATCAGTTTAGGCAAGCTCTTGAACTCATGAATCGATCGGTGGGAAACGCACAAATCCCCGGCGCCATGGAATCCGTGTCCTATCTTAAGAATGTTGAAAGAGACAATATTTCTCATTCTTCCGGCCATTCTGTTTCTAGGTTTCAGTCCCTTTCTGAAGCCGTTCGAACAGGAAGCCAAGTTGCCGCATCGAGTTATAAAGCACTGTTTGCTAAGCGTTGCGAAGAAAAAAATGTAATATTCGTACCCATTCCGAACAAGACATTCGAAGGAAAACAGGTGTACAGATGTGGAAGCATACAAGTTTACATAGATCGAAATGTAATATTTGTATCGCAAAACGGCGGAGTGACATGGGTACCTCAATCGTTAGCCACGGCATTGGAAATAGCCGAGAAGTGA
Protein Sequence
MSDEVEEFEVTEYDLENEFNPNRRRKKISKSERIYGIWADHDSSGEDDGDCKRASFRGSKKPKNYNAPISFIAGGTQQAGKKPEDSKKESDESDNNEENADNAGSKKSRLNLKDTSSEESENEVPSNEIAGMRRKKHQIEGSLMQKGVGNWEKHTKGIGAKLLLQMGYEPGKGLGKQLQGINTPIEAKLRKGRGAIGAYGPEVSQKLADIITNDKSNKKGVTEKLSRWRKDDATANKRVKYIYKSIDEVIEQGKDNSSAKDRSALSKVKVIDMTGPQQRVLSGYHAISRQQRPSDEWETRKELKFANFALPELLHNLNLLVDMCEQDIIQNDRKYKFASDRIVALQHETLNLCRICENEAQQVNKLEKLISIIEECVTSSQNKSLTLEKAASSFRELQKEYYEEYKLYEMSELAISLVIPLIKEHLEHWQPLINPAEPVEMLKNWKNIFEHDAAHATSNMNNQDPFGKLLWHAWIPSIRLCISNWDCKKPETVLRLLEIWMPLIPPWIAENILEQLILPRITLHVHEWDPMTDTTPIHAWIHPWLPLLSASLESVIYPMIRHKLSLALAAWHPSDRSAKFMLLPWNNVFSKGDMDSFLVRNILPKLAQTLDEFIINPQHQILDEHWKWVMEWEDLIPTHSLAGILEKHFFPKWLQVLSVWLNHSPNYDQVTSWYIGWKGQFSEALLKQPNIKDQFRQALELMNRSVGNAQIPGAMESVSYLKNVERDNISHSSGHSVSRFQSLSEAVRTGSQVAASSYKALFAKRCEEKNVIFVPIPNKTFEGKQVYRCGSIQVYIDRNVIFVSQNGGVTWVPQSLATALEIAEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01308690;
90% Identity
iTF_01308690;
80% Identity
iTF_01308690;