Rfer022290.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- nfxl1
- Assembly
- GCA_014462685.1
- Location
- JAACXV010014259.1:364172-369487[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2 2.3e+04 -7.8 5.6 15 19 174 178 173 178 0.81 2 21 0.13 1.5e+03 -0.3 0.4 4 10 209 215 208 215 0.95 3 21 3.1e-08 0.00035 20.9 17.0 1 19 223 240 223 240 0.99 4 21 0.54 6.2e+03 -2.3 0.7 1 4 249 252 249 253 0.89 5 21 7.5e-09 8.6e-05 22.8 13.7 3 19 278 294 270 294 0.85 6 21 1.4 1.6e+04 -3.6 1.0 6 10 319 323 318 323 0.88 7 21 8.3e-09 9.4e-05 22.7 10.0 1 18 329 346 329 347 0.97 8 21 1.3 1.5e+04 -3.5 1.0 5 10 371 376 371 376 0.86 9 21 2e-05 0.23 11.9 8.7 1 18 382 399 382 400 0.96 10 21 0.4 4.5e+03 -1.9 3.2 1 5 409 413 409 421 0.79 11 21 2 2.3e+04 -5.0 1.6 6 10 424 428 424 428 0.93 12 21 5.6e-05 0.64 10.4 17.1 1 18 434 451 434 452 0.94 13 21 1.4e-10 1.6e-06 28.3 13.3 1 19 461 479 461 479 0.98 14 21 0.7 8e+03 -2.7 1.1 5 10 507 512 507 512 0.94 15 21 0.00018 2 8.8 6.2 9 19 527 537 525 537 0.90 16 21 0.0041 47 4.5 6.2 1 12 547 557 547 557 0.90 17 21 2 2.3e+04 -4.8 4.6 17 19 585 587 582 590 0.55 18 21 0.00075 8.5 6.8 4.2 1 12 626 637 620 639 0.91 19 21 0.45 5.1e+03 -2.0 1.2 5 10 653 658 653 658 0.92 20 21 4.2e-05 0.48 10.8 18.1 3 19 667 683 666 683 0.92 21 21 6.5e-06 0.074 13.4 11.9 1 16 726 740 726 746 0.92
Sequence Information
- Coding Sequence
- atgtatgttaattTAACATTAGCAATGAATAATAATAGGGCCAAATCAAACCCCTGGAATAAAAATAAGGTCTcacaaaaacaaagaaaaaatgcGACAAATTCGACAATTAGACCGACCCTGAATGCAGCTGAAGAAAAATTCAGGGAAGCACATACCAAATTACAGAATGCAGTGAAGAAACATATTAAAGACTATGAATCCTCATCTGAAGAAGAAGATATAGATTCTACGAATCTTATAgAGGAAATTTTGAAGCAATACACAAAAACTGGTGGAACAAATGATGAAGTATCTCGTACACAAACTTTCATTGAAGAATCTTTTCTATCTGGAGCAACCACCTGCCTTATTTGTATATCAAGAGTAAAAAGAGATGACCAAATATGGAGCTGTCTTAATTGTCATGGGGCTTTCCATTTAAATTGTATACAAAGATGGTCAAAAGATACAGTTACCcaattaaaacagagaatagaGGAACAAACCATATCGAATGTTAATAAACTATGCTGGTGCTGCCCTAAATGTAGATTTGAATATGCTCCAGACCAAACAcccattaaatatgtatgtttcTGTGCAAAAACTGAAAATCCAGCATATCAGCCATTTCTAGTACCTCACAGTTGTGgtgaaatatgtaaaaaggaTCTAGTACCTTACTGTGGTCATAAATGTTTATTACTGTGTCACCCAGGGCCTTGTCCTCCTTGTCCAGTTACTGTTACAGTGGCATGTTTCTGTGGGAAACATCAACCTGTAACGAAGAGATGTAGCTTCAGAGGATGGTCTTGTGGCAACagatgtggaaaagagttaactTGCAAAAAGCATACTTGTAGTGAGCTATGTCATGACGGAGACTGTCAACCATGTTCAAAGAAAAGCATTCAGAAATGCATGTGTGGGTCACAACAAAAATTGAGGGACTGTAGTTCACCAATATGGCAATGTGATAAGGTTTGTGACAAACCTCTTGATTGTGGTAAACACAAGTGCAAAGATGTCTGTCATGCTGGAGtatgtaatacatgtttgttaGCACTACCCAGGACATGTCCATGTGGCAAAACTAATTATCAACTACCATGTACAGAAGATGTACCCACTTGTCCAGATACATGTGAAAAATTGTTAGAATGTGGAGTTCATACCTGTAATTACAGATGTCATAAAGACAAATGTGGATTGtgtttGGAAATTGTGACAAAATCGTGCAGATGTGGTCAACATACTAAAGAAATACAATGTTGCAAACAATATTTATGTGAAAGTAAATGTAAAAGAGTGAAAGATTGCAATAAGCATCCCTGTAATAGAAAGTGTTGTGATGGCAACTGTCCACCCTGCGAAAAACCATGTGGGCAGACCCTCCAGTGCGGAAATCACAAATGTCAGTCGGTTTGTCATCGCGGCCCTTGTTTTCCATGCCAACAAACAAACACTGTGTCCTGCAGATGTGGTGGTACGAAGATCACAGTACCGTGTGGTAAAAAGCATCGTGTAAAACCACCGAAATGCTCCAAATTATGTTTATTACCGCCGGAATGTCATCATGACGCGCAAGAGAAACACAAGTGTCATTTTGGCGAGTGCCCCCCGTGCCGTCAAGTTTGTAACAAATCACGAACCACCTGTTCTCATCGGTGTTCGGCAAAATGTCATTCCTCGGTCAATGTCAAAATCGAAGCGCAGAAAGCTTCAATGCCCTGGGAGCAAACTTCACCGCAATTCGAGAAGCGTTGCCTCCCATGTCCCGATTGTAAAGAACCAGTTTTGGTAACGTGTTTAGGTGAACACGAAACATCAGCCTGGCCTTGTTTTCAGGCTACACCGTCCAGTTGTGGCAGACAGTGTGGGAGAATGTTGATTTGCACCAATCACTCATGTACTTTATTGTGTCATACGGTAGATGGCGCCAACGACAAGGTTTCGGCGGGAACCAATtgtgaaaaatgtgaaaatCCTTGTTCTAAACCACAGCCCGAGGGTTGCACTCATTCCTGTCCGAAACAATGTCATCCAGGATCCTGTCCTCCgtgtaaacaaatgttaagaATCAAGTGTCACTGTGGTTTAACACAACCGTATGTTTCATGCTCCGATTGGTTAAATGTCGACAAAAGAGAAGAATTACAAAGTTGCGGAAATCAATGccctaaaaatTATCCCTGTGGACATCGATGCAAAACCAACTGCCACTCCGGTGACTGCCCCAATCCCGAGTTGTGCAAAAAGAAAGTGAAGATAACCTGCAAATGCAAGAGACTAAAAAAAGAATTCCAGTGCGAGACAATCCGTAAAGGTCTCGCCGTTGTCGAATGCGATGATGTTTGCAAACAAAAGCAGGAGGAAGAACGAAAGAAACGAGATGCCGAAGAGGCGATCAAACTGAAGGAACGGCAGCTGAAAGAGCAGAAGGAACTGGAGGAATACGAGAAAAAATACGGGGGTAAAAAGAGGAGTAAGAAACGGAACGTCAACGAAGAAGTAGAGAGCCAAAGTTCTACGGGAAAATATTGGATTATTATTGCATTGTTTATTGGGGTCACATCGCTAGTGATATATCAAGCCTTAAATTAG
- Protein Sequence
- MYVNLTLAMNNNRAKSNPWNKNKVSQKQRKNATNSTIRPTLNAAEEKFREAHTKLQNAVKKHIKDYESSSEEEDIDSTNLIEEILKQYTKTGGTNDEVSRTQTFIEESFLSGATTCLICISRVKRDDQIWSCLNCHGAFHLNCIQRWSKDTVTQLKQRIEEQTISNVNKLCWCCPKCRFEYAPDQTPIKYVCFCAKTENPAYQPFLVPHSCGEICKKDLVPYCGHKCLLLCHPGPCPPCPVTVTVACFCGKHQPVTKRCSFRGWSCGNRCGKELTCKKHTCSELCHDGDCQPCSKKSIQKCMCGSQQKLRDCSSPIWQCDKVCDKPLDCGKHKCKDVCHAGVCNTCLLALPRTCPCGKTNYQLPCTEDVPTCPDTCEKLLECGVHTCNYRCHKDKCGLCLEIVTKSCRCGQHTKEIQCCKQYLCESKCKRVKDCNKHPCNRKCCDGNCPPCEKPCGQTLQCGNHKCQSVCHRGPCFPCQQTNTVSCRCGGTKITVPCGKKHRVKPPKCSKLCLLPPECHHDAQEKHKCHFGECPPCRQVCNKSRTTCSHRCSAKCHSSVNVKIEAQKASMPWEQTSPQFEKRCLPCPDCKEPVLVTCLGEHETSAWPCFQATPSSCGRQCGRMLICTNHSCTLLCHTVDGANDKVSAGTNCEKCENPCSKPQPEGCTHSCPKQCHPGSCPPCKQMLRIKCHCGLTQPYVSCSDWLNVDKREELQSCGNQCPKNYPCGHRCKTNCHSGDCPNPELCKKKVKITCKCKRLKKEFQCETIRKGLAVVECDDVCKQKQEEERKKRDAEEAIKLKERQLKEQKELEEYEKKYGGKKRSKKRNVNEEVESQSSTGKYWIIIALFIGVTSLVIYQALN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00376776;
- 90% Identity
- -
- 80% Identity
- -