Basic Information

Insect: Rhynchophorus ferrugineus
Gene Symbol: -
Assembly: GCA_014462685.1
Location: JAACXV010014261.1:37588-40453[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.82 9.3e+03 -2.8 0.0 27 47 162 177 155 180 0.57

2 7 0.35 3.9e+03 -1.6 0.0 25 46 310 331 305 334 0.83

3 7 0.00016 1.8 9.1 0.0 19 47 402 430 396 435 0.84

4 7 0.00049 5.5 7.5 0.0 21 48 432 458 428 462 0.88

5 7 0.29 3.3e+03 -1.4 0.1 21 43 516 538 505 543 0.79

6 7 0.00079 8.9 6.9 0.1 20 49 543 572 535 575 0.84

7 7 0.0035 40 4.8 0.1 21 44 572 595 570 604 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.82	9.3e+03	-2.8	0.0	27	47	162	177	155	180	0.57
2	7	0.35	3.9e+03	-1.6	0.0	25	46	310	331	305	334	0.83
3	7	0.00016	1.8	9.1	0.0	19	47	402	430	396	435	0.84
4	7	0.00049	5.5	7.5	0.0	21	48	432	458	428	462	0.88
5	7	0.29	3.3e+03	-1.4	0.1	21	43	516	538	505	543	0.79
6	7	0.00079	8.9	6.9	0.1	20	49	543	572	535	575	0.84
7	7	0.0035	40	4.8	0.1	21	44	572	595	570	604	0.88

Sequence Information

Coding Sequence: ATGGATGATTGgagttataaacaaattatttgtagGGTTTGTTTATCGGATACGGGTCaatttcaaactatttttaCGTCGGTTGAATTAAAAGATTCACAAGACAAGATGCACCTGTCGGAAATGATATGTTCCTTTAGCAATGTGCAGATGACTTTAGGAGACGGTCTCCCCGAACAGATTTGCGTGAATTGTGCTGAAGAAACTATTAAGATGTACACGTTTAAAAACCGGTGTGAAGATAGTGATAAGTTTTTGAGGAAACGACTGCTAATGTTTACAGGAGATAACAATTTTTCTAAAGTAAACCCTGAAAATACTGAAGattcaaaaacttttcatgACACAGACGTGGAGAAGGATATTTTGGACAGTTTGGATAAAGACTTCGATTTTGATTATGCAACGAATTTGAGTGATAgtgatgattttaaaaatgaatacacTGAAACAGTGGTTCcacaaaaaacaaaagaatatgaGTGTGATATTTGCTTCAAGCGCTTTACAAGGGAGGACCTGCTGTTAAGACACAAAATAGCTCATGCAATGAAAATGGAAGAGTTCAAAGATGCAGAAGATTCCGATTCTGAGGAACCCAATGAAATAGAAGAAAGCAAAATTGATGATATCTCTTACCAGGGCCCTGACTGTGCAGTACTGAATGATGAAGAACATCCGACATATTTAAGCTGTGGTTTATGTAAGAaggattttgttaaatttgagGAATTTGACAAGCATTTTGATGAACATCTAAGAACTTGTAAAGATACTAGTAAAATGTCTGATACGGTTGTAATCAATAATGACTGTTccactttatttttatgtagtttgTGTAGTAATATGTTTGTTAGTATAGATAAGTTTGAAAAACATTTGGAGGAACATGTAGTtgtgaaaactgaaaataataaaactacttaTACTTGTAAAACATGTAGCAAAGTGGTTGAGCACATGGATGCTTTTAAAGTGCATCTTAAAGATGAGCACGACAGAGTGAAgtGTTCCTGTATTGTGCCCAAATACTCAAAAGAAAGGCTTTTTAAAAATCATCTTAAGTACCACAAGGAGAAGTCAAACAAAGATGAGATAAACAATAAATCTGGATATCTATGTAGTCACTGCAAGAAAACCTTTCTTTCTAAAACCGAGCTTGGAGCTCATTACGCCAGCATTGCGATAAACAAGAAAATGTCCTCAAAAAAGAAACCTCATGTTTGTGAAATATGTCTTAAAGCCTTCAACCAGATATCGAATTTAAAGGATCATTTACGCACACATAACGGGGAGAAGCCGTTTCTGTGTCCCACATGCGGGAAGGGTTTTAATCAGTTAGGGAATCTGAGACAGCATCAGGTGAGACATAGTGGCGTTAAGTCGCATGTCTGCACGACATGCGGGAGCGGTTTCGCCAGTAAAGGGGAGTTGGATGCTCATACGCGAAAACACACGGGTGCAAGACCTTTCGTTTGTGATACTTGCGGTAACGGGTTCACTACCTCCTCATCTCTAACCAAACACAAAAGGATACACTCTGGCGAGAAGCCATACGAATGCGATTACTGCGGGATGAAGTTCTCCAGATCGGGAATCTTATCCCGGCACAGACGTATCCACACCGGCGAGAAGCCCTACGTCTGCAAATACTGCAATAAGGCCTTCACTCAGTCCAACGATCTAAACTCCCACTTGAGGATACACACTGGAGAAAAGCCATATATCTGCGACGAATGCGGGCAACCTTTCAGGCAAAGTTCGGCATTACGTAGTCACAAGAAAACACATTCCGGCCATAACGGCGTCAAAACTAACAGCGGCGCCTTCCCCCAGGTCCTAGTGAAGGAAGAGGAAAAGATATTTGTGGAAGAACAAGACCAAATATTCATCATACCTTGA
Protein Sequence: MDDWSYKQIICRVCLSDTGQFQTIFTSVELKDSQDKMHLSEMICSFSNVQMTLGDGLPEQICVNCAEETIKMYTFKNRCEDSDKFLRKRLLMFTGDNNFSKVNPENTEDSKTFHDTDVEKDILDSLDKDFDFDYATNLSDSDDFKNEYTETVVPQKTKEYECDICFKRFTREDLLLRHKIAHAMKMEEFKDAEDSDSEEPNEIEESKIDDISYQGPDCAVLNDEEHPTYLSCGLCKKDFVKFEEFDKHFDEHLRTCKDTSKMSDTVVINNDCSTLFLCSLCSNMFVSIDKFEKHLEEHVVVKTENNKTTYTCKTCSKVVEHMDAFKVHLKDEHDRVKCSCIVPKYSKERLFKNHLKYHKEKSNKDEINNKSGYLCSHCKKTFLSKTELGAHYASIAINKKMSSKKKPHVCEICLKAFNQISNLKDHLRTHNGEKPFLCPTCGKGFNQLGNLRQHQVRHSGVKSHVCTTCGSGFASKGELDAHTRKHTGARPFVCDTCGNGFTTSSSLTKHKRIHSGEKPYECDYCGMKFSRSGILSRHRRIHTGEKPYVCKYCNKAFTQSNDLNSHLRIHTGEKPYICDECGQPFRQSSALRSHKKTHSGHNGVKTNSGAFPQVLVKEEEKIFVEEQDQIFIIP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01307421;
90% Identity: iTF_01307421;
80% Identity: iTF_01307421;