Basic Information

Insect: Rhynchophorus ferrugineus
Gene Symbol: -
Assembly: GCA_014462685.1
Location: JAACXV010000413.1:1597636-1601190[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 6 4.7e+02 1.9 0.1 2 23 10 31 9 31 0.90

2 14 0.00013 0.01 16.6 1.1 2 23 620 642 619 642 0.88

3 14 0.0085 0.67 10.9 1.2 2 23 651 672 650 672 0.98

4 14 0.00017 0.013 16.2 1.1 2 23 675 696 674 696 0.96

5 14 0.77 60 4.7 3.6 1 21 702 722 702 724 0.90

6 14 5.3e-05 0.0041 17.8 4.7 2 23 731 752 730 753 0.95

7 14 2 1.6e+02 3.4 2.3 6 23 767 784 765 784 0.94

8 14 0.0003 0.023 15.4 2.0 2 23 790 812 789 812 0.96

9 14 0.16 13 6.8 0.1 2 23 829 849 829 849 0.96

10 14 0.00022 0.018 15.8 1.7 1 20 855 874 855 877 0.92

11 14 0.00055 0.043 14.6 0.4 1 23 885 907 885 907 0.99

12 14 0.00086 0.068 14.0 3.7 1 23 913 935 913 935 0.98

13 14 1.1e-06 8.6e-05 23.1 3.0 1 23 941 963 941 963 0.99

14 14 0.00045 0.035 14.9 6.1 1 23 969 991 969 992 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	6	4.7e+02	1.9	0.1	2	23	10	31	9	31	0.90
2	14	0.00013	0.01	16.6	1.1	2	23	620	642	619	642	0.88
3	14	0.0085	0.67	10.9	1.2	2	23	651	672	650	672	0.98
4	14	0.00017	0.013	16.2	1.1	2	23	675	696	674	696	0.96
5	14	0.77	60	4.7	3.6	1	21	702	722	702	724	0.90
6	14	5.3e-05	0.0041	17.8	4.7	2	23	731	752	730	753	0.95
7	14	2	1.6e+02	3.4	2.3	6	23	767	784	765	784	0.94
8	14	0.0003	0.023	15.4	2.0	2	23	790	812	789	812	0.96
9	14	0.16	13	6.8	0.1	2	23	829	849	829	849	0.96
10	14	0.00022	0.018	15.8	1.7	1	20	855	874	855	877	0.92
11	14	0.00055	0.043	14.6	0.4	1	23	885	907	885	907	0.99
12	14	0.00086	0.068	14.0	3.7	1	23	913	935	913	935	0.98
13	14	1.1e-06	8.6e-05	23.1	3.0	1	23	941	963	941	963	0.99
14	14	0.00045	0.035	14.9	6.1	1	23	969	991	969	992	0.95

Sequence Information

Coding Sequence: ATGTCAACTTTAGAGACATCAGACACAATGTGTCCAgtttgtactttatatttgcGACCTGGTATTACACTTAAACAGCATTTGGCTAGCCATCCCAAGCAGAAAGTTATCGATGCATTGGTAAAGTTGTCTTTGCATGAAGAGCCTGTGAAGTCTCAAATCACCCAACAAACTGATGATGTACCAGAAGgtgATTCAGCTATTTCTCAGACCCCTAATCAACCATCCACATCTATGCCtccatattttaatcaaattccAGTGGGAAATTCTTCCAGTGTAGGCCCAACAACACTACCTGGCaaccatttttttatgtatcaaCAAAGCATGAGTACTTCTTCACCTCACCAACCAAATGTATCTGCAATGACATTCAATCCATTTGCTCAACAATATCTGGTACCTGCTGTCTATAACGCCCAGATGATGCCTTATTTCTATCAGCAACAACAACTTATTATGTCTAGCAATGGCATTCCACCTCATATCAAGGCATTACCCTTTGAGAGTTCTACTTCTGGGTCCCAAGTATTAAATAGACCATTGGAGGTTGTGAAGGAAAAACATGCAGAAAATACAACCTGTGAAAAATTAACTGAATCAGATCAAGATGGTTTGAACAGCCAAGGTGAAAGCAGATCAAGTGAAGATGATGATGAAGTTGAGGAAACAGAGCAACCAATTGTTTCATTAACGATTAATGATCCTCAAGAACCTGAAGCAAGTACATCTTATAAAGAAGAGGAGGATCAGGAAGGggttataaatttattagagGAAGATGAAAATTCTTCAGATCGTTCATATCAACCTCCAATGTACCAGGAACATAATGAGGAGTATCAAGCCCAACATGAAATAGATCATGAAGAATGTGTGGGAACGCCATTATCTCACAGTTCAAATGCAGACTGGGCAATGAGTTCAGACTTAAATAAGGCATGCCAGACACAAACAAATAATTCTCTGTCTCCAAGatCATCCCTTCAAAATGAAGAACATCCACAAACTGCTCCAGAGTATTTCTTCATTGATCAAAGAAGCAATGTGTCAGTTGTTctaaatacagaaaatgttgcATCTAATTTTGATCAgGCAGAAGCAGTATATAACTCATCTACAATTCTCAATAATAGTGAAGGAGTAGATTTTATGAATGTAGAAGATATTGAAGGTATGCAGGTTATCTTAGGGGATTTTACAAATGCTACTATCATTCCTCAAGAGAGTTTTGATCCTATTCGCCAGAATAATAGTCCTCCAATAGTTATGGCAGTTAGTGGTGAAAATAGTGATGGCTTTTTACATATAGTTCAGCAGAAAAATCAGGAAATGGAGGAATCCTGTTTAGATAATGTCAATATACGCTCAGATGAAAAGATGCCTCCAAGAGGAGAATTATCTGGTCAAGAAAGTATGGGCAGCGCAAGTGATTTGACCTGGAATCAAATTCAACATTATCAAGACCAAGATCCTATGTGTTACGAACAAAATTCATGGGACAGCACATCAGAAAATCCCTTAGTTACAGATGATTTTGACACAAAAGAAATTCAGACAAGTACCCCAGGGATCTTAAAACAAGAGGACGTGAAGGAAAATGTAATGTCTAGTGCGCCTAAGCAAAAGAGACCTAAACTTGTTTCTTTGGATGTTGGTAGAAGTAAGCCTAGGAAACTGCTAATCAAACCTAAACGGCCAAAGAAGGAATCTCAAACGACCAgctttaataatgttttttctaataaattgaAAACGGAAAATTCAGAAGGAGAAAACTTTGAAAATTTCTCTTCTACAGGGCAGTCAGTGAAACAATTGGATGAAATCAAGGAGGAGAAAGTATCAGTAGACATGTGCAAGGAATGTGACAAGATATTTAAGACAAAGAAAGAACTAAGGATGCACAATCTTGAGTTTCATAAGATAACTCGCAATAAAAGCAACAAATGTCAGATTTGTAATGAAGTATTTGATGcagaacataaatttacggagCATTTGAAAATTCATCCGCTGGAGTGTCATATTTGTGGCAAACTGTTCTTTAGGCGCCAAGGTCTGAAATTACACATTGCTCGACACGAGGGGATAAAACCACACAAATGCGATTTGTGCGACAAAGCATTTTTGGTTAAGCAGAAGTTGGAAGAGCATCGGAATTGTCATACTGGAAACGCACCCATTAAGTGTTCTTTATGCCCAGAAACTTTCAAAAGACATTCCAACTTAGTCCAGCATCGGAATCGGCATCATTTCTTCgtaaaGAAGAAAGTTAAGGACTATGTGTGTTTTTGTGGAGAAGTATTTCATTCAAAGAAAAAGTTCGCCTGGCACAGTGAAAAACACGACACGAAGCCTAAATCTTGTACTCAGTGTAGTGAAAAATTCGTACACATGGCAGGACTGACTAGACATATGAGACGTGCTCACAACGCTGAGTACCTTCCCGATGGTAGAGATCCAAACACCCTTAATCGAGTGTGTCCAATTTGCAAAGGTGTGTACCTCAAAAGCTCTATGGAGGCTCATCTACAAACGCATGGCAACAACAAACCCTATGCATGTTCGATGTGCAGCAAGAAGTTCACTACCAAGTGgaacttaaaactacacaaATGGACTCACGCGCCCCGTACTCAAAAGCCTTTTAAATGTAGTCAGTGTAAAGGAGCCTTCATCAGGGAGAACGATTATATAGCTCACATGAATTCCCATAAGAGCGTACGACCGTACACGTGCAACTATTGCGGCGCGCAGTTTATTCGCAAATATAATTGTCAGCGACACGTCAAGGAACATGAAAATCAAAAAGCTTACGTGTGCAACGTTTGCGAGAAATCATTTCATAGGTCTTATTATCTCAAAGATCACATGAGGGTGCATACCGGCCATAGGCCATACGCTTGTCACATCTGCGGAAAGACATCAACTACCAAATCTAATCATAATAAACACATTCAGATTCATCATGCCAGAGAGCCAGTCAGCACGGAAAATTAG
Protein Sequence: MSTLETSDTMCPVCTLYLRPGITLKQHLASHPKQKVIDALVKLSLHEEPVKSQITQQTDDVPEGDSAISQTPNQPSTSMPPYFNQIPVGNSSSVGPTTLPGNHFFMYQQSMSTSSPHQPNVSAMTFNPFAQQYLVPAVYNAQMMPYFYQQQQLIMSSNGIPPHIKALPFESSTSGSQVLNRPLEVVKEKHAENTTCEKLTESDQDGLNSQGESRSSEDDDEVEETEQPIVSLTINDPQEPEASTSYKEEEDQEGVINLLEEDENSSDRSYQPPMYQEHNEEYQAQHEIDHEECVGTPLSHSSNADWAMSSDLNKACQTQTNNSLSPRSSLQNEEHPQTAPEYFFIDQRSNVSVVLNTENVASNFDQAEAVYNSSTILNNSEGVDFMNVEDIEGMQVILGDFTNATIIPQESFDPIRQNNSPPIVMAVSGENSDGFLHIVQQKNQEMEESCLDNVNIRSDEKMPPRGELSGQESMGSASDLTWNQIQHYQDQDPMCYEQNSWDSTSENPLVTDDFDTKEIQTSTPGILKQEDVKENVMSSAPKQKRPKLVSLDVGRSKPRKLLIKPKRPKKESQTTSFNNVFSNKLKTENSEGENFENFSSTGQSVKQLDEIKEEKVSVDMCKECDKIFKTKKELRMHNLEFHKITRNKSNKCQICNEVFDAEHKFTEHLKIHPLECHICGKLFFRRQGLKLHIARHEGIKPHKCDLCDKAFLVKQKLEEHRNCHTGNAPIKCSLCPETFKRHSNLVQHRNRHHFFVKKKVKDYVCFCGEVFHSKKKFAWHSEKHDTKPKSCTQCSEKFVHMAGLTRHMRRAHNAEYLPDGRDPNTLNRVCPICKGVYLKSSMEAHLQTHGNNKPYACSMCSKKFTTKWNLKLHKWTHAPRTQKPFKCSQCKGAFIRENDYIAHMNSHKSVRPYTCNYCGAQFIRKYNCQRHVKEHENQKAYVCNVCEKSFHRSYYLKDHMRVHTGHRPYACHICGKTSTTKSNHNKHIQIHHAREPVSTEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00376597;
90% Identity: -
80% Identity: -