Csor041475.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- -
- Assembly
- GCA_031761425.1
- Location
- JARFXV010001590.1:331020-339482[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.5 1.1e+03 1.9 0.1 2 23 10 31 9 31 0.90 2 14 4e-05 0.0077 18.1 1.5 2 22 624 644 623 646 0.88 3 14 0.008 1.5 10.9 1.2 2 23 655 676 654 676 0.98 4 14 0.00015 0.03 16.2 1.1 2 23 679 700 678 700 0.96 5 14 0.72 1.4e+02 4.7 3.6 1 21 706 726 706 728 0.90 6 14 3.6e-05 0.007 18.2 4.9 2 23 735 756 734 757 0.95 7 14 1.9 3.7e+02 3.4 2.3 6 23 771 788 769 788 0.94 8 14 0.00035 0.068 15.1 2.0 2 23 794 816 793 816 0.96 9 14 0.21 40 6.4 0.1 3 23 834 853 833 853 0.97 10 14 0.00021 0.04 15.8 1.7 1 20 859 878 859 881 0.92 11 14 0.00092 0.18 13.8 0.2 1 23 889 911 889 911 0.99 12 14 0.00081 0.16 14.0 3.7 1 23 917 939 917 939 0.98 13 14 8.5e-07 0.00016 23.4 3.6 1 23 945 967 945 967 0.99 14 14 0.00042 0.081 14.9 6.1 1 23 973 995 973 996 0.95
Sequence Information
- Coding Sequence
- atgtcTGCATTGGAGGGTACAGACACTATGTGTCCTGTGTGCACCTTATATTTGCGTCCTGGTATTACTTTGAAGCAACATTTAGCTAGTCATCCCAAGCAAAAGGTCATTGATGCATTAGTAAAGCTGTCATTGCATGAAGAACCTTTGAAAGCACAGAGTTCTCAACAAAATGAAGATATGTCAGAGGGTGTTACGACAATTTCTCAAAATCCTAATCAACCATCAACCTCCATGCCTCCATATCTCAATCAAGTTCCTCTGGGGCATCCTTCCAACATGGGGCCACCGCTACCAGGCAATCATTTTTTCATGTATCAACAGAGTATGAGCACCTCCTCTCCCCACCAACCTAATGTGTCTGCAATGACATTTAATCCGTTTGCTCAACAGTATTTGGTTCCTGCTGTTTATAATGCCCAGATGATGCCCTACTTCTATCAGCAGCAACAGCTCATTATGTCAAGTAACGGCATTCCACCCCACATCAAGGCATTACCCTTTGAAGCCTCCACTTCTGGGGCACAGATTAGTGGTGGAACATTGAACAGGCCATTGGAAGGGGTTAAGGAAAAACGCACTGATGATCCAGTTGAAAAATTGACAGAATTAGATCAAGATGACCTGAACAGTCAAGGTGAGAGCAGGTCTAGTGAAGAAGATGATGAGAGTGAAGAAGCAGAAGAGCCTGGAGGTAGTCTAACAATCAATAGCACTGAAGAACCACAAACAAGTACTGAATATAAAGAAGAGGTGGATCAAGAGGGAGTTATAAATTTGTTGGAGGATGATGAGAATTCTTCTGATCGTGACTATCAACCATCGGTGTACCAAGGACACAGTGAGGAATACCAGAGCCAACATGAAATTGATCATGAGGAATGTGTAGGTACACCTTTATCTCATACTTCAAATTCAGATTGGACACTGAATTCTGACCTAAATAAGGCCTGTCAAACCCAGACAAACAGTGCTTTATCACCAAGATCCTCTATACACAATGAAGAGCAGCAACAACAAAGCGCAcccgaatatttttttatcgaccAAAGAAGCAACGTCTCGGTAGTTCTGAGTTCGGATAATGTTGGAACAAATTTTGAACAGTCAGAGGCCGTATACAACTCCTCAACTATGCTCAACAACAGTGAAGGGGTCGATTTTATGAATGTAGACGACATAGAAGGTATGCAGGTGATATTGGGAGACTTCACCAATGCCACCATCATTCCCCATGAGAATTTCGATTCGGTAAGACAGGATGGTAGCCCTCCGATAGTAATGGCCATTAGTGGAGAGAACAGTGACGGTTTCATTCATATAGTGCAACAGAAAAGTCAAGAAATGGAAGAATCGTGTTTGGATGACGTAAATATTCGGTCTGACGAAAAAATGCCACCCAGGGGAGAACTATCaggGCAGGAAAGTATGGGAAGTGCAAGCGACTTAACCTGGAATCAAATTCAACATTACCAAGACCAAGAGGATCCAATGTGCTATGAACAGAACTCCTGGGACAGTACCTCAGAAGCCCATTCTCTGACAGAAGACTTTGACACCAAAGAAATCCAAACAAGCACTCCGGGAATTTTGAAAGAAGAGGACGTGAAAGAAAATGTGTTGCCCAACGTGTCCAAACTGAAGAAACCTAGATCTGTTTCTTTAGAGGTTTGTAGAAGTAAGCCTAGGAAGCTTCTCATCAAGCAAAAACGACCAAAGAAAGAATCCCAAACAAGCTTCAACAACGTTTTCACCAACAAGTTGAAAACGGAAAATGCAGACactgaaaattttgaaaatttcggTTCGAcagGACAACCAGTTGAGCAGTTGGCAGAGATAAAGACCGAGGAAAAAGTGACGGTGGACATGTGCAAGGAATGCGGCAAGATATTCAAGACAAAAAAGGATCTGAAGACTCACAACAGTGAATTTCACAAAATACCCCGCAGCAAAAGTAACAAGTGTCAAATTTGTAACGAAGTCTTTGACGCCGAACATAAATTTACGGAGCATTTAAAAATTCATCCCCTGGAATGCCACATATGCGGGAAATTATTCTTCAGGCGACAAGGCCTCAAATTGCACATAGCCAGACATGAAGGATTGAAGCCGCACAAGTGCGATTTGTGCGACAAGGCATTTTTGGTCAAACAGAAGCTGGAGGAGCATCGAAATTGTCATACAGGAAATGCCCCCATAAAATGTTCCATGTGCCCGGAGACGTTTAAAAGACACTCAAACCTGGTACAGCATCGGAATCGGCACCatttttttataaagaaaaaagtaaaagaCTATGTGTGTTTCTGTGGAGAGGTCTTCCATTCGAAGAAGAAGTTCGCTTGGCACAGCGAAAAACATGACACCAAACCTAAATCTTGCACGCAGTGCAGCGAGAAATTCATCCACATGGCGGGACTCACCAGACATATGAGACGAGCTCACAATGCGGAATATCTCCCAGACGGTCGAGATCCCAATACTCTGAATCGGATTTGTCCCATATGCAAAGGTGTATACCTGAAGAGCTCCATGGAAGCCCATTTGCAGACTCACGGCAACAACAAACCTTATGCGTGTTCGATGTGCAGCAAAAAGTTCACCACCAAGTGGAATCTGAAGCTCCACAAGTGGACGCACGCGCCTCGCACCCAAAAACCATTCAAGTGCGGCCAATGCAAGGGAGCTTTCATCAGGGAGAACGACTACATAGCTCACATGAACTCTCACAAGAGTGTGCGACCATACACGTGTAATTATTGCGGGGCTCAGTTCATCCGCAAATATAATTGTCAGCGTCACGTCAAAGAGCACGAAAACGCTAAAACTTATGTGTGTACCGTTTGTAATAAATCCTTTCACAGGTCGTATTATCTCAAGGATCATATGAGGGTTCACACGGGACTCAGACCGTACGCCTGCCACATTTGCGGAAAAACATCCACAACGAAGTCAAATCACAACAAGCACATTCAGATCCATCACGCCAGGGAACCCGTTAGCacagaaaactaa
- Protein Sequence
- MSALEGTDTMCPVCTLYLRPGITLKQHLASHPKQKVIDALVKLSLHEEPLKAQSSQQNEDMSEGVTTISQNPNQPSTSMPPYLNQVPLGHPSNMGPPLPGNHFFMYQQSMSTSSPHQPNVSAMTFNPFAQQYLVPAVYNAQMMPYFYQQQQLIMSSNGIPPHIKALPFEASTSGAQISGGTLNRPLEGVKEKRTDDPVEKLTELDQDDLNSQGESRSSEEDDESEEAEEPGGSLTINSTEEPQTSTEYKEEVDQEGVINLLEDDENSSDRDYQPSVYQGHSEEYQSQHEIDHEECVGTPLSHTSNSDWTLNSDLNKACQTQTNSALSPRSSIHNEEQQQQSAPEYFFIDQRSNVSVVLSSDNVGTNFEQSEAVYNSSTMLNNSEGVDFMNVDDIEGMQVILGDFTNATIIPHENFDSVRQDGSPPIVMAISGENSDGFIHIVQQKSQEMEESCLDDVNIRSDEKMPPRGELSGQESMGSASDLTWNQIQHYQDQEDPMCYEQNSWDSTSEAHSLTEDFDTKEIQTSTPGILKEEDVKENVLPNVSKLKKPRSVSLEVCRSKPRKLLIKQKRPKKESQTSFNNVFTNKLKTENADTENFENFGSTGQPVEQLAEIKTEEKVTVDMCKECGKIFKTKKDLKTHNSEFHKIPRSKSNKCQICNEVFDAEHKFTEHLKIHPLECHICGKLFFRRQGLKLHIARHEGLKPHKCDLCDKAFLVKQKLEEHRNCHTGNAPIKCSMCPETFKRHSNLVQHRNRHHFFIKKKVKDYVCFCGEVFHSKKKFAWHSEKHDTKPKSCTQCSEKFIHMAGLTRHMRRAHNAEYLPDGRDPNTLNRICPICKGVYLKSSMEAHLQTHGNNKPYACSMCSKKFTTKWNLKLHKWTHAPRTQKPFKCGQCKGAFIRENDYIAHMNSHKSVRPYTCNYCGAQFIRKYNCQRHVKEHENAKTYVCTVCNKSFHRSYYLKDHMRVHTGLRPYACHICGKTSTTKSNHNKHIQIHHAREPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01307476;
- 90% Identity
- -
- 80% Identity
- -