Basic Information

Insect: Rhynchophorus ferrugineus
Gene Symbol: -
Assembly: GCA_014462685.1
Location: JAACXV010011991.1:31256-40835[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.1e-05 0.0025 18.5 0.7 1 23 166 188 166 188 0.95

2 15 0.0017 0.13 13.1 0.6 3 23 196 216 195 216 0.99

3 15 0.00012 0.0094 16.7 0.1 1 23 304 326 304 326 0.98

4 15 0.11 8.5 7.4 0.2 1 23 332 355 332 355 0.93

5 15 2.1e-07 1.6e-05 25.4 2.9 1 23 380 402 380 402 0.98

6 15 0.0039 0.31 11.9 0.1 1 23 416 438 416 438 0.95

7 15 0.46 36 5.4 0.1 1 23 444 467 444 467 0.95

8 15 0.0088 0.69 10.8 3.4 1 19 473 491 473 492 0.97

9 15 0.00011 0.0088 16.8 4.5 1 23 501 523 501 523 0.97

10 15 0.0047 0.37 11.7 0.3 2 23 529 550 528 550 0.97

11 15 1e-05 0.00079 20.1 0.4 1 23 558 580 558 580 0.98

12 15 0.0044 0.34 11.8 0.2 3 23 588 608 586 608 0.97

13 15 0.00014 0.011 16.5 0.3 1 23 614 636 614 637 0.95

14 15 0.076 6 7.9 1.9 1 23 651 673 651 673 0.96

15 15 5.5e-05 0.0043 17.8 0.1 1 20 1066 1085 1066 1088 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.1e-05	0.0025	18.5	0.7	1	23	166	188	166	188	0.95
2	15	0.0017	0.13	13.1	0.6	3	23	196	216	195	216	0.99
3	15	0.00012	0.0094	16.7	0.1	1	23	304	326	304	326	0.98
4	15	0.11	8.5	7.4	0.2	1	23	332	355	332	355	0.93
5	15	2.1e-07	1.6e-05	25.4	2.9	1	23	380	402	380	402	0.98
6	15	0.0039	0.31	11.9	0.1	1	23	416	438	416	438	0.95
7	15	0.46	36	5.4	0.1	1	23	444	467	444	467	0.95
8	15	0.0088	0.69	10.8	3.4	1	19	473	491	473	492	0.97
9	15	0.00011	0.0088	16.8	4.5	1	23	501	523	501	523	0.97
10	15	0.0047	0.37	11.7	0.3	2	23	529	550	528	550	0.97
11	15	1e-05	0.00079	20.1	0.4	1	23	558	580	558	580	0.98
12	15	0.0044	0.34	11.8	0.2	3	23	588	608	586	608	0.97
13	15	0.00014	0.011	16.5	0.3	1	23	614	636	614	637	0.95
14	15	0.076	6	7.9	1.9	1	23	651	673	651	673	0.96
15	15	5.5e-05	0.0043	17.8	0.1	1	20	1066	1085	1066	1088	0.94

Sequence Information

Coding Sequence: ATGGAAGATTCCTTCAATTTAACGTGGGATGATTCTTCTGTGGTACAATCAGAAGAAGTAATCACCATGGAAAATGAGATTATACCTTCACAATCAGAGGAGTTTATTGGTGATGTGCAGCAGGAAACGTATGTCGAAACAGTGCAGGATGGTGATTTAGTTCATGGTGTGGGTGTGGTTGAGGAAGAGGTTGTTCAAGATAATAGTGGATCTGTTCAGGAAGTTTCCTTAGAAGATGACCAGACAGACGGTGGCCTTATGTATTTGACAGAAGATAACATGTTAGTCATGCACTCTGATCAAGATGCAGCATACAGTCAAGCTGAACTTATGGAGGTAACAGAGGAAATAATCACTGATCAGTGGGATGAGGGTTGTCCAGAGGAAATCATCATAGGGTCAGAGGAGGCAGTGGGAACCATTGATGGTCAACCTGTGGAAGATGAAGATATCCCTTTACCAACTGACCAGGACGAATACACAGCTGCCAGGCCATATCCGTGCGATTTTTGCAGCAGGAGATTTCGGAAGAAAGCCAACCTGATGAACCACATGGTAGCACATCAGTCCGATCGTCCTCATGGCTGCAATCTATGCGGTGTTCGCTATATGCGAAAAACCGACCTACTGAACCACCTTAAGAGTCACGCCTATATTCCCGAATCTGAACAGGTGGAAGATGATGATTTGTCTTTGGATGAGCAAGGTTTCGATAAAGCGAGGAAAAAGCTGAAGAACTTCtccaaaaagaagaaaaaacggATCATCAAGGAGGAGTATGATATGTTCACAACAGAAGGTGAATCGACGGACGACAAGATCATGGAAGAGCTGGATCCGAAGATCGAGTTCATCAGCGCGTCGGGACCGGAGGAGATCCGGTACCAGGTGACCGATCCGAAGAAACCGTTCGTGTGCCAGCACTGCGGCGTGGGATTCGCGAGAGAGAAGGCTCTGGCGTCACACGCGAGGATCCACGGCGGCGACAGCCCGTTCGAGTGCCAAAAATGCGGCGAGATGTTCTGGGACGTCGCGGTGATGCAGGAGCACACCCGAACCAAACACGGCGGGATGGAAGACCTGGACGACGACGAAGACGAGGACTATTCTGATTCCGAGGAGACCAAGTACGGCACGTTCTACTGCCCGACCTGCGGCCTCTCCTTTCACCGCCAGGACAACCTGAAGCGACACCAAAGGATACACATCAAGGAGGAGTACGTCAACGAGCACCACGACTACGGTCATATGTGCAACGTGTGCGGCGAGTGCTTCCCCGAGGCCCTCGACCTGCTGGCCCATGCGGAAATACACGCCCGCGGATCGGAGTACCGCTGCATGATCTGCGGCGAGATTTGTCTCGACGAACGGGCCCTGGGCAATCACGTCCAGACCGCCCATAAAAATTTACCGCCTCACACCTGTTCTCTCTGCGGCAGGACCTGTAAGGATCAAAGGACGTTGCTGAAACATTCCTGGGAGCACTCGAAGGAAAAGAGTTTCGCCTGTTCAAAGTGTTCCAAGACTTTCCACAACAAGGCTAGGCTCAAGCGTCACATGTTATCTCACAGGAATAAAGTCGTGACATGTGATGTGTGCGGAGAAGACTTCCCCGACGGAAGGAGCCTGATGAACCATCGGCATAGTCACAGTAGCGTCTCGGGACGTCAGTTTCCCTGTCGGGAGTGCGGGAAAACGTTCGGCTCCAGAAGTTCGCAGCAGATTCACATTAGGATACATACCGGCGAAAGACCGTACGGTTGTCGGTTTTGTTGGAAAGCTTTTGCCGACGGTGGTACCTTGAGGAAACACGAGAGGATACACACCGGCGAGAAACCGTACGCCTGCGCGGTATGTCCGAGGGCTTTCAATCAGAGAGTGGTGCTTAGGGAACACATAAGGTCCCACCATTCCGGACCCGATCCGAAATATTCCCACAGTATGACGCCCTACTGTTGCACCGTCTGTTCCGACATGTTCGCCACCTCCCAAGACCTGATCCTGCACTTGATACATCACTGCGACCTGAACACGGCGATGAAGCGCCAGCCCCAGATAGGACCGAGGAAATACAAACGCAGGAGGAAATTGAAACCTCACGAACTGGAACTCATGACGTCCTCACATCCCGAGGAGTCCTACATGAACGATCAGATGAACGCGCAGAACCCCAACACCACCGACTCGGAAGAGGAGAGGGAGAGGCGGAAGAGGTCGAAGAGGGTGTTCTCCAGAAAGCCGTCTAGTTCTCCGAAAACCAGTATCAGCGAGACGATGTCGGACATTTACAACAGCGGTCCGGTGGACAGTTTCGAGAGCATCGCGTTGCCCAAGTCGCCGACCTCGAAGACCAAGCCGAAGAAAGGAAAGAACGACTCGGCCCCGATGCCCTCCCGGCCCAAGATGATCCACACCCAGAAGACTAGGGTGCCGATGGAAGCTGGCGAGGACGGCCGGATACGCCACAGGACGAGGACGCTGGTTACCAGGACGCAGCCGGCCGAGATCAAGTCCTCCACCGACGATGTTTTTCTTTCGGCCACAGGAGAGAGGATACGGCCCAGGACGAAGAACGTCAGTTACCACGTGTTGAACCCCGAAAAGTACCCGATCGCCACCTTCCCATCGGATGACCAGACTACTCAGGCGGTGGAGAATCTGCTCAAGGAAGCCGGGGAGGAGCTAGCCACCAACGGAACCATCGAGACTGAAGAGATCGTCGAGCACACGCCCGAGGTTGCGGCCGAACAGACCGTCGAAACAGAGAATGTCCCGGTGCCTGTTGGTATCGTCGAGGTGAGAACCAGACGGAATAGTACTCGGAGTTCCCGTAATGTCATAGGACCCGGGAGCAAAGTCAGGATAATCAAGGAGGGTATGATCATATCGAAAGTGAAGCGTAACAGCGAGAGTCAGAATGAGCCCGAATCGATTCTGCCAGACATGCAGCCAGTATCTGTGTACATTAAGGAAGAGAACTTCGGTTTCCACTCGGAGCACAATATAACCGACGACGAACATCTCCAAGAGCTATCGGCCAATGACGAACACGTGCCGGCGTCAGAAGTCGTCGACTCGCATGTAGATAAAGACAGTCATCACCTGATCAACATCAAGCAGGAGATCATGGATCCGAGCGCGCTTCACGAACTTGCCGAGTTGTCGATGCGTCACGCCGGCAACACCACCAGCCTCTTCAAGTGCGAGATGTGCGACGAGGTGTTCTCCGACAGGTCCCAGTTGCTACTCCACGTGCCCATACACATATGA
Protein Sequence: MEDSFNLTWDDSSVVQSEEVITMENEIIPSQSEEFIGDVQQETYVETVQDGDLVHGVGVVEEEVVQDNSGSVQEVSLEDDQTDGGLMYLTEDNMLVMHSDQDAAYSQAELMEVTEEIITDQWDEGCPEEIIIGSEEAVGTIDGQPVEDEDIPLPTDQDEYTAARPYPCDFCSRRFRKKANLMNHMVAHQSDRPHGCNLCGVRYMRKTDLLNHLKSHAYIPESEQVEDDDLSLDEQGFDKARKKLKNFSKKKKKRIIKEEYDMFTTEGESTDDKIMEELDPKIEFISASGPEEIRYQVTDPKKPFVCQHCGVGFAREKALASHARIHGGDSPFECQKCGEMFWDVAVMQEHTRTKHGGMEDLDDDEDEDYSDSEETKYGTFYCPTCGLSFHRQDNLKRHQRIHIKEEYVNEHHDYGHMCNVCGECFPEALDLLAHAEIHARGSEYRCMICGEICLDERALGNHVQTAHKNLPPHTCSLCGRTCKDQRTLLKHSWEHSKEKSFACSKCSKTFHNKARLKRHMLSHRNKVVTCDVCGEDFPDGRSLMNHRHSHSSVSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYSHSMTPYCCTVCSDMFATSQDLILHLIHHCDLNTAMKRQPQIGPRKYKRRRKLKPHELELMTSSHPEESYMNDQMNAQNPNTTDSEEERERRKRSKRVFSRKPSSSPKTSISETMSDIYNSGPVDSFESIALPKSPTSKTKPKKGKNDSAPMPSRPKMIHTQKTRVPMEAGEDGRIRHRTRTLVTRTQPAEIKSSTDDVFLSATGERIRPRTKNVSYHVLNPEKYPIATFPSDDQTTQAVENLLKEAGEELATNGTIETEEIVEHTPEVAAEQTVETENVPVPVGIVEVRTRRNSTRSSRNVIGPGSKVRIIKEGMIISKVKRNSESQNEPESILPDMQPVSVYIKEENFGFHSEHNITDDEHLQELSANDEHVPASEVVDSHVDKDSHHLINIKQEIMDPSALHELAELSMRHAGNTTSLFKCEMCDEVFSDRSQLLLHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00376542;
90% Identity: -
80% Identity: -