Basic Information

Insect: Cosmopolites sordidus
Gene Symbol: -
Assembly: GCA_031761425.1
Location: JARFXV010000326.1:305863-317925[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.8e-05 0.0055 18.6 0.7 1 23 152 174 152 174 0.95

2 15 0.00024 0.047 15.6 0.6 3 23 182 202 181 202 0.99

3 15 0.00011 0.021 16.7 0.1 1 23 290 312 290 312 0.98

4 15 0.029 5.7 9.1 0.1 1 23 318 341 318 341 0.96

5 15 1.9e-07 3.7e-05 25.4 2.9 1 23 366 388 366 388 0.98

6 15 0.012 2.4 10.3 0.2 1 23 401 423 401 423 0.94

7 15 1.5 3e+02 3.7 0.4 1 23 429 452 429 452 0.90

8 15 0.019 3.6 9.7 2.6 1 19 458 476 458 477 0.96

9 15 0.00044 0.085 14.8 4.3 3 23 488 508 486 508 0.98

10 15 0.0081 1.6 10.8 0.3 2 23 514 535 513 535 0.96

11 15 9.1e-06 0.0018 20.1 0.4 1 23 543 565 543 565 0.98

12 15 0.004 0.77 11.8 0.2 3 23 573 593 571 593 0.97

13 15 0.00013 0.024 16.5 0.3 1 23 599 621 599 622 0.95

14 15 0.14 28 6.9 1.2 1 23 636 658 636 658 0.96

15 15 0.00019 0.036 16.0 0.1 1 20 1041 1060 1041 1063 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.8e-05	0.0055	18.6	0.7	1	23	152	174	152	174	0.95
2	15	0.00024	0.047	15.6	0.6	3	23	182	202	181	202	0.99
3	15	0.00011	0.021	16.7	0.1	1	23	290	312	290	312	0.98
4	15	0.029	5.7	9.1	0.1	1	23	318	341	318	341	0.96
5	15	1.9e-07	3.7e-05	25.4	2.9	1	23	366	388	366	388	0.98
6	15	0.012	2.4	10.3	0.2	1	23	401	423	401	423	0.94
7	15	1.5	3e+02	3.7	0.4	1	23	429	452	429	452	0.90
8	15	0.019	3.6	9.7	2.6	1	19	458	476	458	477	0.96
9	15	0.00044	0.085	14.8	4.3	3	23	488	508	486	508	0.98
10	15	0.0081	1.6	10.8	0.3	2	23	514	535	513	535	0.96
11	15	9.1e-06	0.0018	20.1	0.4	1	23	543	565	543	565	0.98
12	15	0.004	0.77	11.8	0.2	3	23	573	593	571	593	0.97
13	15	0.00013	0.024	16.5	0.3	1	23	599	621	599	622	0.95
14	15	0.14	28	6.9	1.2	1	23	636	658	636	658	0.96
15	15	0.00019	0.036	16.0	0.1	1	20	1041	1060	1041	1063	0.93

Sequence Information

Coding Sequence: atggAAGAGACCTTTAGCTTGTCTTGGGATGATGCTACTTCTGTAGTTCAGTCTGAAGAAGTTATAACTATGGAAAATGAAATTATACCTTCTCAATCAGAAGAATTTATCACTGTACAGGAAGATGAACTGGTGGAAGATGTCGGAGTAGTtgaagaagaaGTTGTTCAAGATAACAGTGAAGTAACTTTAGATGACCAACAGGCTGAAGATGGCCTTATGTATTTGACAGaaGACAATGTCTTAGTAATGCATGCTAACCAGCAATCTGCATATGGTCAGGATGAACTCATGGAGGTAACAGAAGAGATTATAACAGATCAGTGGGGTGAAAGTTGTCCTGAAGAAATCATTATTGGATCTGAAGAAGCAGTTGGAAGTATTGACCAACCAGCTGAAGATGAAGATATTCCTTTACCAACCGACCAGGATGAATATACAGCTGCAAGACCTTATCCTTGTGATTTTTGTAGTAGAAgATTTCGTAAAAAAGCTAATCTGATGAATCACATGGTTGCCCACCAGTCTGACAGGCCTCACGGTTGCAACTTGTGTGGTGTAAGATACATGAGAAAGTCAGACCTGATGAATCATCTAAAAAGTCATGCATTTATTCCTGATTCAGAGCCTATTGAAGATGATGATGTATCCTTGGATGAACATGGATTTGATAAAGGAAGGAAAAAACTGAAGAATTTTgccaagaaaaagaaaaagagaccTATAAAGGAGGAATATGATATGTTTACAACAGAGGGTGAATCGACGGATGACAAGCTTATTGGTGAAATCGACACGAAGATTGAGTATCTCAGTTCAAGTACGCAAGAGGAGATCAGATATCCAGTTACAGATCCAAAGAAACCGTTTGTTTGTCAGCACTGCGGTGTTGGATTCGCCAGGGAGAAGGCTCTGGCATCGCACGCGAGGATTCACGGAGGGGACAGTCCCTTTGAGTGCCAAAAATGCGGAGAAATGTTCTGGGACGTCGCTTTGATGCAGGAACACGCAAGAACGAAACACGGAGAAATTGAAGATATCGATGACGATGAAGACGAAGACTATTCCGATTCGGAAGAAACCAAATACGGAACGTTCTACTGTCCCACGTGCGGTCTTTCCTTTCATCGACAGGACAATCTCAAGCGACACCAAAGGATCCACATCAAAGAGGAGTTCGTCAATGAGCACGATTTTGGTCATATTTGCAACGTTTGCGGCGAGTGTTTCCAGGAAGCTCTGGATCTTCTGGCTCACGCTGAAATCCACGCACGAGGGTCCGAGCATCGGTGTATGATCTGCGGGGAAATTTGCTTGGACGAGACTGCGCTTGCGACCCACGTGCAAGCTACTCACAAAAATTTGCCTCCTCACACTTGTGCCCTTTGCGGAAGGACCTGCAAGGATAACAGAACTCTGTTGAAACATTCCTGGGAGCATTCAAAGGAAAAAAGTTTCGGTTGTACAAAATGTTCCAAGACGTTCCATAATAAAGCCAGGCTCAAGCGTCATATGATTTCTCATAGGAATAAGGTAGTGTCGTGTGACGTATGTGGTGAAGATTTTCCTGATGGAAGAACCCTGATGAACCATCGACACAGTCACAGTAGCGTGTCAGGGCGTCAGTTTCCTTGTCGGGAATGCGGAAAAACTTTTGGTTCAAGAAGTTCGCAGCAGATTCATATTAGAATACACACAGgTGAGAGACCGTACGGTTGTCGTTTTTGTTGGAAGGCTTTTGCCGATGGAGGCACGCTGAGAAAACACGAGAGAATACACACCGGCGAGAAGCCTTATGCTTGTGCGGTGTGTCCCAGAGCGTTCAATCAAAGAGTAGTTCTCCGAGAACACATAAGATCTCACCATTCAGGTCCCGACCCGAAATATTCCCACAGCATGACGCCCTACTGTTGCGCCGTCTGTTCGGACATGTTCGCTACATCTCAAGACCTTATCCTTCATCTGATTCATCACTGCGACATGAACACCGCGATGAAACGTCAACCTCAAGTGGGCCCTAGAAAATACAAACGAAGGAGAAAGTTGAAGCCGCATGAGCTGGAGCTCATGTCCGCTTCCCAGGGTGAAGAATTATACATGAACGATCAGTTGAACGCGCAAAATCCCAATACGACGGATTCGGAAGAGGAGAGGGAGAGGCGGAAGAGGTCTAGGAGGGTTTTCTCCAGAAAACCGTCTAGTTCTCCGAAAACCAGTATCAGTGAAACAATGTCAGACATCTATAACAACAGTGGGCCGGTAGAAAGCCTGGAAAGCATCACGTTACCCAAATCACCCACGTCCAAAACGAagccaaaaaaaggaaaaaatgacgCCGTGTCCGTACCGTCCCGCCCCAAGATGATTCACACCCAGAAGACGAGAGTACCGGTTGAAACTGGCGAAGATGGGCGGATACGACACAGAACCAGAACCCTGATCACTCGAACACAACCGACGGAGGTCAAATCTGCCACtgGTTTCTCTACAGGTGAGAGGATAAGGCCTAGAACCAAAAACGTCAGTTACCATGTGCTGAATCCGGAAAAATTCCCGCTCGCCACCTTCCCTTCTGATGACCAGACCACTCAGGCGGTGGAAAACTTGCTCAAGGAGGCCGGGGAAGAAGCAGCTACCAACGGAAATATCATCGCAGAAGAGATCGTGGAACAGGCTCCGGAGGTGGCTGCCGAACAGACCGTAGAAACGGAGAGCGTACCGGTTCCTGTTGGGATTGTGGAAGTGAGGACAAGGCGGAATAGTACCAGGGGATCGAGGAATATTATTGGACCTGGAAGTAAAGTTAGGTTAATTAAAGAAGGCATGATCATATCCAAGGTCAAACGTAACAGTGAAAGCCAAAACGAACCGGAATCAATTTTACCAGACATGCAACCCGCGTCAGTTTACATAAAGGAGGAACAATACAGCCTGCACACCGAGCACCACATCACAGAAGACGATCAAGTTCAAGAATTTTCCGTGAACGATCAAGTCAAGAATTCAGTCAGCGAGAGGAATCCCAACGTTATCAATATCAAACAGGAGATTATGGACCCGAGTGCCCTCCACGAACTGGCCGAGTTGTCCATGCGACATGCCAGTAGCACGACCAGTTTCTTTAAGTGCGAAATGTGCGACGAAGTGTTCTCCGACAGGGCTCAGTTGTTGCTTCACGTTCCCATACACATATGA
Protein Sequence: MEETFSLSWDDATSVVQSEEVITMENEIIPSQSEEFITVQEDELVEDVGVVEEEVVQDNSEVTLDDQQAEDGLMYLTEDNVLVMHANQQSAYGQDELMEVTEEIITDQWGESCPEEIIIGSEEAVGSIDQPAEDEDIPLPTDQDEYTAARPYPCDFCSRRFRKKANLMNHMVAHQSDRPHGCNLCGVRYMRKSDLMNHLKSHAFIPDSEPIEDDDVSLDEHGFDKGRKKLKNFAKKKKKRPIKEEYDMFTTEGESTDDKLIGEIDTKIEYLSSSTQEEIRYPVTDPKKPFVCQHCGVGFAREKALASHARIHGGDSPFECQKCGEMFWDVALMQEHARTKHGEIEDIDDDEDEDYSDSEETKYGTFYCPTCGLSFHRQDNLKRHQRIHIKEEFVNEHDFGHICNVCGECFQEALDLLAHAEIHARGSEHRCMICGEICLDETALATHVQATHKNLPPHTCALCGRTCKDNRTLLKHSWEHSKEKSFGCTKCSKTFHNKARLKRHMISHRNKVVSCDVCGEDFPDGRTLMNHRHSHSSVSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYSHSMTPYCCAVCSDMFATSQDLILHLIHHCDMNTAMKRQPQVGPRKYKRRRKLKPHELELMSASQGEELYMNDQLNAQNPNTTDSEEERERRKRSRRVFSRKPSSSPKTSISETMSDIYNNSGPVESLESITLPKSPTSKTKPKKGKNDAVSVPSRPKMIHTQKTRVPVETGEDGRIRHRTRTLITRTQPTEVKSATGFSTGERIRPRTKNVSYHVLNPEKFPLATFPSDDQTTQAVENLLKEAGEEAATNGNIIAEEIVEQAPEVAAEQTVETESVPVPVGIVEVRTRRNSTRGSRNIIGPGSKVRLIKEGMIISKVKRNSESQNEPESILPDMQPASVYIKEEQYSLHTEHHITEDDQVQEFSVNDQVKNSVSERNPNVINIKQEIMDPSALHELAELSMRHASSTTSFFKCEMCDEVFSDRAQLLLHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01307420;
90% Identity: -
80% Identity: -