Rfer020460.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- -
- Assembly
- GCA_014462685.1
- Location
- JAACXV010014526.1:1315604-1326174[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0029 0.23 12.3 4.0 1 23 386 408 386 408 0.98 2 18 0.00015 0.012 16.4 1.8 1 20 414 433 414 436 0.94 3 18 4.5e-05 0.0035 18.0 1.7 1 23 442 464 442 464 0.98 4 18 3.7e-06 0.00029 21.4 4.1 1 21 470 490 470 492 0.95 5 18 1.3e-05 0.001 19.7 4.7 1 23 498 520 498 520 0.99 6 18 2.6e-05 0.0021 18.8 5.3 1 23 526 548 526 548 0.97 7 18 1.1e-05 0.00087 19.9 7.5 1 23 554 576 554 576 0.97 8 18 1.4e-07 1.1e-05 25.9 1.9 1 23 582 604 582 604 0.98 9 18 7.6e-05 0.0059 17.3 6.7 1 23 610 632 610 632 0.97 10 18 0.00017 0.014 16.2 9.7 1 23 638 660 638 660 0.98 11 18 1.1e-07 8.4e-06 26.3 3.1 1 23 666 688 666 688 0.98 12 18 2.1e-06 0.00017 22.2 7.8 1 23 694 716 694 716 0.98 13 18 5.1e-05 0.004 17.9 8.2 1 23 722 744 722 744 0.98 14 18 1.8e-05 0.0014 19.3 7.7 1 23 750 772 750 772 0.98 15 18 2.4e-05 0.0019 18.9 6.7 1 23 778 800 778 800 0.97 16 18 4.6e-05 0.0036 18.0 0.7 1 23 806 828 806 828 0.98 17 18 0.092 7.2 7.6 5.0 1 23 838 860 838 860 0.98 18 18 1.2e-06 9.1e-05 23.0 1.0 1 23 866 888 866 888 0.98
Sequence Information
- Coding Sequence
- ATGATGAATAACGAAAATCCTAACGCCATCCAAGGAGCTCACGGCTCGACAAATAACGATGCGTCATCACAAAGACAACCATCAACTACGATACCAACTGATCTTCGTGTGAACACATTAAATGCAGTTGCTTTGAGTAGTGTAGCCAAATATTGGGTTCTAACAAATTTACTGCCAGGACCTATACCTCAAGTTTCAGTGTATGGGCTTCCAGGAGCGGGTAGAGACAATCAGGGAAAGATACCACAGGCTGATCCGCAAATTTTATTACAGCAACATGCCCAGATACCAGTCAGTATATCCACATCCCAGGGTATTGGAATTCCTACAGGAACAATACATTTGGACACTTCACATACCTTACCACAGCAACAGAATCAGCAGACTCctcaacaacaacaacagcagcagcagcagcaacaACCGCCCCCGCAACAGCAACAACAGCAGCCTCCTCAACCTGATCATAGTCAAATGAATAGAGATATACGAATCCCAAATTCTCAACCAAGCCATTCTCAGCAACAGAATTTGGTTCAGGTCCAAGTGAATCAGGACAATATGGTTTCAGTGattgatgaaaataatgaaaagcaTCATAAGGAGATGTTATCTGCCCAGTTGCAAGCGGCCCATTTGCAACTTAATGAATCCCAGATGAACTCACAAGGATTGACGGTTCAACAGTTACAACAGATGCAGGCCCAACAGGTGCAACAGGTTAGGATGGAGTCTTCTTCAATGGAACACAACCAGCAGCAGCTCTCTCACAACGAACCGTCTAATGCCTTAAACGAAAATATGGAAATTGTCAAGGATGAAAAGTCAATACAGtTTAAAATTCAAACCAATATGCAGGAACAAGAGCTTGCTAAAACTTTGGGTGTGGAAATGGTTCAGAATATGTATAAGGTGAATGTGGATGATCTCAATCATCTTTTAGCTTACCACGAGATATTTGGAAAACTACAGGGACAGAGTGAAGTAGTGAATAATTCAAATCCAAATATACCTGCCGGTAATTCGAATAGTAACATCAATATCCCGCCACCAAATCCTTCAAATTTAGCTATTATTGCTAAAGATGAACACGAACCATCAACTAGTTCAATGCCACAAAACGAGAATAACGCTACATCCGTTATAACTGGAAATCATCAGTGTGATCTGTGCCTAAAAACGTTCCAGTTCAGGTATCAGCTTATTGTCCACAGGCGATACCACAGTGAGAAAAAGCCATTTACTTGTCAGGTTTGTGGAAAAGCGTTTCCCAATAGCCAGGAGCTTTCCAGACATGGTAAATGCCATTTGGGTGGCAGTATGTTTACCTGTACTTTGTGTTTTCACGTATTCGCTAATGCACCTACGTTGGAAAGACATATGAAGAGACATTCAACTGAGAAACCATATGCTTGCACTACCTGCGGGAAAACGTTTGCCAGAAAGGAGCATCTTGAGAATCATATGCGATGTCATACTGGTGAAACTCCCTATCGCTGTCAATTTTGTGGAAAAAATTTTACCCGAAAAGAGCACATGGTTAATCACGTTAGGAAACATACTGGCGAAACACCGCAtagATGCGAAATTTGTAAGAAATCATTCACTAGAAAGGAACATTTCATGAATCATGTTATGTGGCATACTGGTGAAACGCCACATTGTTGTACTGTATGTGGCAAAAAGTATACCAGAAAAGAACACTTGGCTAACCATATGCGTAGTCATACAAATGATACACCTTTCCgGTGTGAAATTTGTGGTAAAGCCTTCACTAGAAAAGAGCATTTTACCAATCACATAATGTGGCACACAGGGGAGACACCTCATCGTTGTGATTTCTGTTCTAAAACATTTACTAGAaaggaacatttgttaaatcacgtTCGTCAGCATACAGGAGAATCTCCACATAAATGTCTGTTCTGTCACAAGTCATTTACCAGGAAAGAACATTTAACCAACCATGTTCGTCAGCATACAGGAGAAACGCCCTTTAAGTGTACATACTGCCCCAAGGCATTCACTAGAAAAGATCATTTGGTTAATCACATTAGACAGCATACAGGCGAATCTCCTCATAAGTGTACTTACTGTACTAAATCTTTCACTAGGAAGGAACATTTAAATAACCATATAAGACAACATACGGGAGAATCGCCGCATAAGTGTCATTTCTGTGCTAAATCATTTACTAGGAAGGAGCACTTAACAAATCATGTCAGGATACATACAgGTGAATCTCCACATCGTTGTGAATTTTGTCAAAAGACTTTTACAAGAAAGGAACATCTGACGAATCATTTGAGGCAACATACTGGTGAAACGCCTCATTGTTGTAATGTGTGTTCCAAACCATTTACCAGAAAAGAACATTTGTTGATACATATGCGATCCCATACAGGAGAACGGCCCTTTACTTGTACTGAATGTGGCAAGTCTTTTCCACTTAAAGGAAATCTTCTGTTTCATTTGCGATCTCATAATAAAGGTCAGCATGCAGAGAGGCCATTCAGATGTGATCTGTGTGAGAAAGATTTTATGTGCAAAGGTCATTTAGTATCCCACCGCAGGTCCCATGGTGGGGAGAAGCCGTTTAATTGTACTGAGTGCGGCAAGTCTTTCGTGGAAAAGGGCAATCTTCTTAGGCACAGTAGAAAACACATATTAGACCGAGAGAAGGCTGAACTCGAACAAATGAATGCACAAAATAATTCAACGTCGCAGCCACAACAAAATCCAAATAATAGTAACATTCAGGTAGCGCAAGTTCCAGTTAATCAACCAACTCCACAGCAACAGCAGTCATCTAACAGTAACATTGTACAGAGTGGTCATCTGATGCATACTTCTAATCATCACTCTGTCGTAGTGCCTGCGAATGGTAATGTTCTAGCCACTTACTAG
- Protein Sequence
- MMNNENPNAIQGAHGSTNNDASSQRQPSTTIPTDLRVNTLNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPGAGRDNQGKIPQADPQILLQQHAQIPVSISTSQGIGIPTGTIHLDTSHTLPQQQNQQTPQQQQQQQQQQQPPPQQQQQQPPQPDHSQMNRDIRIPNSQPSHSQQQNLVQVQVNQDNMVSVIDENNEKHHKEMLSAQLQAAHLQLNESQMNSQGLTVQQLQQMQAQQVQQVRMESSSMEHNQQQLSHNEPSNALNENMEIVKDEKSIQFKIQTNMQEQELAKTLGVEMVQNMYKVNVDDLNHLLAYHEIFGKLQGQSEVVNNSNPNIPAGNSNSNINIPPPNPSNLAIIAKDEHEPSTSSMPQNENNATSVITGNHQCDLCLKTFQFRYQLIVHRRYHSEKKPFTCQVCGKAFPNSQELSRHGKCHLGGSMFTCTLCFHVFANAPTLERHMKRHSTEKPYACTTCGKTFARKEHLENHMRCHTGETPYRCQFCGKNFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHCCTVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKAFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCLFCHKSFTRKEHLTNHVRQHTGETPFKCTYCPKAFTRKDHLVNHIRQHTGESPHKCTYCTKSFTRKEHLNNHIRQHTGESPHKCHFCAKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLLIHMRSHTGERPFTCTECGKSFPLKGNLLFHLRSHNKGQHAERPFRCDLCEKDFMCKGHLVSHRRSHGGEKPFNCTECGKSFVEKGNLLRHSRKHILDREKAELEQMNAQNNSTSQPQQNPNNSNIQVAQVPVNQPTPQQQQSSNSNIVQSGHLMHTSNHHSVVVPANGNVLATY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00444375;
- 90% Identity
- iTF_00376517;
- 80% Identity
- -