Csor040649.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- -
- Assembly
- GCA_031761425.1
- Location
- JARFXV010001541.1:158816-192141[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0027 0.53 12.3 4.0 1 23 399 421 399 421 0.98 2 18 0.00014 0.027 16.4 1.8 1 20 427 446 427 449 0.94 3 18 4.3e-05 0.0083 18.0 1.7 1 23 455 477 455 477 0.98 4 18 1.8e-05 0.0034 19.2 3.6 1 21 483 503 483 505 0.94 5 18 1.2e-05 0.0024 19.7 4.7 1 23 511 533 511 533 0.99 6 18 2.6e-05 0.0051 18.7 5.3 1 23 539 561 539 561 0.97 7 18 1.1e-05 0.002 19.9 7.5 1 23 567 589 567 589 0.97 8 18 1.4e-07 2.6e-05 25.8 1.9 1 23 595 617 595 617 0.98 9 18 7.2e-05 0.014 17.3 6.7 1 23 623 645 623 645 0.97 10 18 0.00012 0.024 16.5 9.3 1 23 651 673 651 673 0.98 11 18 1e-07 2e-05 26.3 3.1 1 23 679 701 679 701 0.98 12 18 2e-06 0.00039 22.2 7.8 1 23 707 729 707 729 0.98 13 18 4.8e-05 0.0094 17.8 8.2 1 23 735 757 735 757 0.98 14 18 1.7e-05 0.0032 19.3 7.7 1 23 763 785 763 785 0.98 15 18 2.3e-05 0.0044 18.9 6.7 1 23 791 813 791 813 0.97 16 18 4.3e-05 0.0084 18.0 0.7 1 23 819 841 819 841 0.98 17 18 0.087 17 7.6 5.0 1 23 851 873 851 873 0.98 18 18 1.1e-06 0.00021 23.0 1.0 1 23 879 901 879 901 0.98
Sequence Information
- Coding Sequence
- ATGAAAAAGGCCGATTTATTCTTCTACCAGaaggcATCAACCCAAAGACAGCCATCCACCACGATTCCGACTGATCTTCGGGTGAATACATTAAATGCTGTGGCTCTAAGCAGTGTTGCCAAGTATTGGGTCCTGACGAATTTATTGCCAGGCCCTATACCACAAGTTTCAGTTTATGGACTTCCTGGAGCTGGAAGGGATAATCAAGGGAAACTACCACAGGCTGATCCACAAATATTGCTCCAGCAACATGCCCAAATACCAGTCAGCATATCAACCTCTCAAGGTATTGGTATTCCTACTGGGGCGATTCACCTCGACACATCGCATACACTATCTCAACAACAGAATCAGCAGCCCCAGCAGCAACAACAACAGCCTCCGCAGCAACAGACACAGCAGCCTGATCATAGTCAAATGAATAGAGATGTTAGGATACCGAATTCTCAACCGAATCATTCTCAACAACAAAACTTGGTGCAGGTTCAGGTGAATCAGGACAATATGGTGTCGGTTATTGATGAGAACAATGAGAAGCACCACAAGGAGATGTTGTCGGCTCAGTTGCAGGCGGCCCATTTACAACTCAGTGAATCTCAGATAAATTCCCAAGGTCTGACCGTTCAACAGTTGCAGCAAATGCAGGCGCAACAAGTCCAACAGGTACTGGACAATGCGGTTAGGATGGAGTCATCATCCATGGAACATAACCAGCAGCAATCCCACAACGAACAGCCAAATGCCTTAAACGAAAATATGGAAATTGTCAAGGATGAAAAGTCAATACAGTGCAAGTTTCTCAATAACGCACAGTTGGGGCTTCAGGAGGTTAAAGGCAGCATAATGGACGTAAGAACCGCTGATGGAAGCATAGTTAAAATTCAAACGAATATGCAAGAACAAGAGCTTGCTAAAACGTTGGGGGTGGAAATGGTTCAAAATATGTATAAAGTTAATGTTGATGATTTAAATCAACTTTTAGCATACCatgaaatatttggaaaactACAGGGACAAAgTGAAGTAGTAAACAACTCGAATCAAAATCTGCCCGCAAGTAATGCCAGCAGCAACATTAATATTCCTCCTCCAAACCCATCAAACTTAGCCATTATAGCCAAGGATGAACATGAGCCATCGACGAGTTCAATGCCTCAGAACGAGAACAACACGACGTCCGTTATAACTGGAAATCATCAGTGCGATCTgtgtttaaaaacatttcaatttaGGTATCAGCTGATCGTACACAGACGGTATCACAGCGAAAAGAAACCCTTCACCTGTCAGGTTTGCGGAAAAGCTTTTCCCAACAGTCAGGAACTTTCTAGGCATGGTAAATGTCATTTGGGCGGAAGTATGTTCACTTGTACGTTATGTTTTCACGTATTTGCAAATGCTCCTACATTGGAGAGACACATGAAGAGACATTCAACGGAGAAACCTTACGCTTGCACTACTTGTGGGAAGACTTTTGCCAGAAAGGAACATCTAGAGAATCATGTGCGGTGTCATACCGGTGAAACTCCGTATCGGTGTCAGTTTTGTGGAAAGAATTTCACTAGGAAGGAACACATGGTTAATCATGTTAGGAAGCATACTGGCGAAACTCCTCATAGGTGTGATATATGCAAGAAATCATTTACCAGAAAAGAACATTTTATGAATCATGTGATGTGGCATACAGGTGAAACACCACATTGTTGTACGGTGTGTGGAAAGAAGTATACTCGAAAGGAACATTTGGCTAATCATATGAGGAGTCATACCAATGATACACCATTCAGGTGTGAAATATGTGGTAAAGCGTTCACTAGGAAAGAACATTTTACCAACCACATAATGTGGCATACAGGCGAGACGCCTCATCGCTGCGATTTTTGTTCTAAAACGTTTACGAGAAAGGAGCATTTATTGAACCACGTCCGACAACATACCGGAGAATCTCCACACAAATGTGTTTTCTGTCATAAGTCGTTCACCAGAAAGGAACATTTAACTAATCACGTTCGTCAACATACAGGAGAAACACCGTTCAAATGTACCTATTGTCCAAAAGCCTTTACTCGAAAAGATCATTTAGTTAACCATATTAGGCAACATACAGGAGAGTCTCCTCATAAGTGTACTTATTGTACAAAATCATTCACCAGGAAGGAACATTTAAACAATCATATTAGACAACATACTGGAGAATCACCACACAAGTGTCATTTCTGTGCTAAGTCGTTCACAAGAAAGGAACACTTAACAAATCATGTTAGAATACACACAGGTGAATCTCCACATCGTTGCGAATTCTGTCAGAAAACTTTTACAAGGAAGGAACATCTAACTAATCATTTAAGACAACACACTGGGGAAACACCACATTGTTGTAACGTTTGTTCGAAACCTTTCACGAGGAAGGAACATCTATTAATACATATGCGATCACATACTGGGGAAAGACCCTTCACTTGTACCGAATGCGGTAAATCTTTTCCACTTAAAGGAAATCTTCTGTTTCATTTACGATCTCATAATAAAGGCCAGCACGCAGAGAGACCTTTCAGATGTGATCTGTGTGAAAAGGACTTTATGTGTAAAGGTCATTTAGTTTCCCATCGGAGATCCCATGGAGGTGAAAAACCGTTCAATTGTACAGAGTGTGGTAAATCTTTCGTGGAAAAAGGGAACCTTCTCAGACATAGCAGAAAACATATACTAGATAGAGAAAAGGCAGAACTCGTTGAACAAATGAATGCACAAATAAAACAATCTGCTATAGATAATACCCCGTCGCAACCGCAACAGAATCAGAATAATAGCAATATTCAGGTCTCTCAAGTCCCAGTCAATCAACCAACGCAGCAACAACAGTCGTCGAACAGCAACATAGTGCAGAGTGGACATTTGATGCATACATCCAACCATCATTCTGTTGTAGTGCCTGCGAACAGTAATGTTCTAGCCACTTACTAG
- Protein Sequence
- MKKADLFFYQKASTQRQPSTTIPTDLRVNTLNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPGAGRDNQGKLPQADPQILLQQHAQIPVSISTSQGIGIPTGAIHLDTSHTLSQQQNQQPQQQQQQPPQQQTQQPDHSQMNRDVRIPNSQPNHSQQQNLVQVQVNQDNMVSVIDENNEKHHKEMLSAQLQAAHLQLSESQINSQGLTVQQLQQMQAQQVQQVLDNAVRMESSSMEHNQQQSHNEQPNALNENMEIVKDEKSIQCKFLNNAQLGLQEVKGSIMDVRTADGSIVKIQTNMQEQELAKTLGVEMVQNMYKVNVDDLNQLLAYHEIFGKLQGQSEVVNNSNQNLPASNASSNINIPPPNPSNLAIIAKDEHEPSTSSMPQNENNTTSVITGNHQCDLCLKTFQFRYQLIVHRRYHSEKKPFTCQVCGKAFPNSQELSRHGKCHLGGSMFTCTLCFHVFANAPTLERHMKRHSTEKPYACTTCGKTFARKEHLENHVRCHTGETPYRCQFCGKNFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHCCTVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKAFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCVFCHKSFTRKEHLTNHVRQHTGETPFKCTYCPKAFTRKDHLVNHIRQHTGESPHKCTYCTKSFTRKEHLNNHIRQHTGESPHKCHFCAKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLLIHMRSHTGERPFTCTECGKSFPLKGNLLFHLRSHNKGQHAERPFRCDLCEKDFMCKGHLVSHRRSHGGEKPFNCTECGKSFVEKGNLLRHSRKHILDREKAELVEQMNAQIKQSAIDNTPSQPQQNQNNSNIQVSQVPVNQPTQQQQSSNSNIVQSGHLMHTSNHHSVVVPANSNVLATY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00444375;
- 90% Identity
- iTF_01307398;
- 80% Identity
- -