Rfer013948.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhynchophorus ferrugineus
Gene Symbol
Hr39
Assembly
GCA_014462685.1
Location
JAACXV010014571.1:90323-152791[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 0.8 9e+03 -4.0 4.9 37 157 126 242 106 279 0.43
2 4 1e-08 0.00012 22.0 0.0 1 28 396 423 396 431 0.87
3 4 0.0047 53 3.4 0.0 69 118 438 486 418 499 0.64
4 4 2e-72 2.2e-68 231.9 0.0 205 408 528 726 508 726 0.96

Sequence Information

Coding Sequence
ATGTCGGCAGAGATGCGCCCGCCCAATGTGTCAGTCACTCCCATCAACATGGAGTACGGTGCACAGCCTGGACCCCTCATAAACGCCTCGGGGGGCGTGACCGAGCCGCCCAGGACGCGAAGCGCGCCCCACCCCTCCGCCGTATCGTTGACGAACGGAGTGGGCAATGACGTAGATGGTCCCGATGCGGAATTGGCCCGTATCGAGTTCCAGGCAGTGAACATGCGCAGTAAGAAGAACAAAGGAGAGGAACTTCCCCGACCGATGAGCTGGGAGGGGGAGTTGAGCGATGGAGAACGTGACGGAATGTGCGTTGATGAAAGTAGCGCGTCGGCACATTTACCTGAAAACCTATCAGTGTCTGCCTCGAAACATAGCTCGACCTTAGATCTAAAAGATAGCCCGGTATTACGGCTGAAGCAACCGCCTGTTAGCAGTTACTCGTTGCATAGCACACCCTCAAACTCGCCCTTACTAAATCAAAGGCACCCCGGCACAGGAGTGCCCTTAATAAGCCACAAGGATCTAGTCCATAAGGCCTTGAATGTGCCACCCACTCCAAGTCCAGATTCCGCCATCCATTCCGGCTACTCAGTCTTCAGTTCACCAAACCAGAGTCCTTTGACGCAGAGACACGTCAATCTGACGCCGAATCTGAGTAGGAACAATTCAGATGCGTCCCACTCGAGCTGCTGTAGCTATTCCAGCGTATCCGTTTCTGTATCACCCACTCAACAATTTTCACCAACCCATAGCCCAATTCAGGGTCGTCATATCCATAACTCGTTACTCGGTAGCCCGTTGCATCACGGCGTGCTTTATCGTAACTTGCCTGAGGACACACCCTCCGTCCAATCGCAGTATGAGCATGACCCAGGGGGCGGGGTTTGCGAGGAAACTGATGACAAGACTGGTTTATTACACACGGCTCTGCCCGCCCAACCCGGTATCTCAAGACAACAACTGATCAATAGTCCATGTCCAATATGTGGAGACAAGATATCCGGTTTTCACTATGGTATTTTCAGCTGTGAATCGtgtaaaggattttttaagCGCACTGTCCAAAATAGAAAGAACTATGTGTGTTTGAGAGGAGCCCAGTGTCCAGTTACGGTAGCCACTAGGAAAAAATGTCCAGCTTGTCGATTCGAGAAATGTCTTCAGTGCGGCATGAAACTAGAAGCGATACGTGAAGATCGTACTCGTGGAGGAAGGTCAACTTATCAATGTTCATATTCCTTGCCCCCCTCTTTGGCTACGCAAGCCGAATTGAGAGCCAGTTCTACAGACCTGCGGCAAGGTTTAGGCGAACACCATCCTGGATTTACCGTGAAATTGGAACCGCCGGACAGTATGCTGTCCCAGCACCAAAAGAGAACCATTTCACCAGGCTCGAAAGGGGTCCCTCCATTATTGCAAGAAATAATGGATGTGGAGCATCTCTGGCATTACAATGAGTCGGAACTAAACAGGCTCAGTACCGAAGGTCATTTAGGCAGAGAAGGAGGAAGTGGAGCAGTATGTAACCTCACTAATCATCCACTATTAGCCGGTACAGCTCTAGCAGGCACCACAGATACCAATCCGGACTTTGTGGCAAATCTGTGCAATATTGCTGACCATCGATTATATAAAATCGTCAAATGGTGCAAGAGTCTTCCTTTGTTCAAGAATATATCTATCGATGACCAAATATGTCTTCTCATCAATTCCTGGTGTGAGCTTTTGTTGTTCTCTTGCTGTTTCCGATCAATGGGAAGTCCAGGTGAAATTAGAGTATCTCTAGGTAAAAGCATTACACTAGCGCAAGCCAGAGACATGGGCATGCAGGCTTGTATTGAGAGGATGCTGAATTTCACTGAACATCTGCGCAGGCTTAAGGTAGACCAGTACGAGTATGTGGCCATGAAAGTTATTGTTCTTTTAACTTCTGACACTTCGGAACTGCGAGAAGCTGAAAAAGTGCGCGCTTCCCAAGGAAAAGCGTTGAAAGCCTTACAGGACTACACGTTGTCCCACTATCCCGAGAGTCCTGCCAAATTTGGCGAACTATTGCTTAGGATACCCGAACTACAACGCACTTGCCAAGTGGGCAAGGAAATGCTGACCATCAAATCGAAAGATGGCGACGGCCCCAGTTTCAATCTGCTCATGGAACTCTTGCGAGGAGACCACTGA
Protein Sequence
MSAEMRPPNVSVTPINMEYGAQPGPLINASGGVTEPPRTRSAPHPSAVSLTNGVGNDVDGPDAELARIEFQAVNMRSKKNKGEELPRPMSWEGELSDGERDGMCVDESSASAHLPENLSVSASKHSSTLDLKDSPVLRLKQPPVSSYSLHSTPSNSPLLNQRHPGTGVPLISHKDLVHKALNVPPTPSPDSAIHSGYSVFSSPNQSPLTQRHVNLTPNLSRNNSDASHSSCCSYSSVSVSVSPTQQFSPTHSPIQGRHIHNSLLGSPLHHGVLYRNLPEDTPSVQSQYEHDPGGGVCEETDDKTGLLHTALPAQPGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAQCPVTVATRKKCPACRFEKCLQCGMKLEAIREDRTRGGRSTYQCSYSLPPSLATQAELRASSTDLRQGLGEHHPGFTVKLEPPDSMLSQHQKRTISPGSKGVPPLLQEIMDVEHLWHYNESELNRLSTEGHLGREGGSGAVCNLTNHPLLAGTALAGTTDTNPDFVANLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMGSPGEIRVSLGKSITLAQARDMGMQACIERMLNFTEHLRRLKVDQYEYVAMKVIVLLTSDTSELREAEKVRASQGKALKALQDYTLSHYPESPAKFGELLLRIPELQRTCQVGKEMLTIKSKDGDGPSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01240932;
90% Identity
iTF_01351755;
80% Identity
iTF_01307318;