Rfer003393.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- MBD2
- Assembly
- GCA_014462685.1
- Location
- JAACXV010000060.1:502206-503911[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.7e-09 7.6e-06 25.8 0.3 2 74 7 98 6 101 0.91
Sequence Information
- Coding Sequence
- ATGAGCGGGATCACGATTGAGAAGACACGGTACGAATGTGTCCAATTACCGAAACGGTTCCAGCGGGATGATGTGTTACGCAAGACCGGTTTACAAGTTGGAAAAGTCGATTTGTATTACAGTGGCAGAAGCATTAGAAGCGATGCCTCGCTCGTTCCACCCATTCGTCAGACGGCATCTATTTTCAAACAACCTGTTACAGTTCACAAAACACAGGAAAGCAAAGTCAAGTCAGattataaaaaTGGCAACCAAGAAAAACCTAAACAGTTGTTCTGGGAAAAAAGGCTCGAGGGCCTCAGATCATGTGACGTAGATGGTGTGGAGTTTGAAGGCATGCAGCTTCCAAAAGGTTTAAAGCCAGTTGGGCCCAATGTTACAGAAGAAACTATTATTCAGAGTGTGGCCACAGCATTACATGTCTCATCGAATTCAGTTACTGGACAGACTGGTACTAAAAACTCGCTAGAAAAAAACCCAGGTGTCTTTCTTGATCCCAAACAACCTCTGGTTCAAGCTGTTAATATTTCTGAAGATGATATCAAGAAACAAGAAGAAAGAGTGGCTGCTGTAAGGAAGAGACTTCAGGATGCTCTGAAACAGTATTag
- Protein Sequence
- MSGITIEKTRYECVQLPKRFQRDDVLRKTGLQVGKVDLYYSGRSIRSDASLVPPIRQTASIFKQPVTVHKTQESKVKSDYKNGNQEKPKQLFWEKRLEGLRSCDVDGVEFEGMQLPKGLKPVGPNVTEETIIQSVATALHVSSNSVTGQTGTKNSLEKNPGVFLDPKQPLVQAVNISEDDIKKQEERVAAVRKRLQDALKQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01351724;
- 90% Identity
- iTF_00376344;
- 80% Identity
- -