Rfer001950.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- lilli
- Assembly
- GCA_014462685.1
- Location
- JAACXV010014049.1:133340-179198[-]
Transcription Factor Domain
- TF Family
- AF-4
- Domain
- AF-4 domain
- PFAM
- PF05110
- TF Group
- Unclassified Structure
- Description
- This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental disabilities [1]. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 4.2e-10 9.6e-06 25.4 0.1 7 120 9 131 6 144 0.68 2 7 0.021 4.7e+02 0.1 19.9 349 497 215 391 198 403 0.48 3 7 0.39 8.9e+03 -4.1 9.1 447 486 435 475 404 483 0.56 4 7 0.39 8.9e+03 -4.1 9.2 398 466 504 567 493 573 0.58 5 7 1 2.3e+04 -6.3 8.7 86 239 566 715 547 739 0.40 6 7 1 2.3e+04 -11.3 26.7 107 244 745 865 698 895 0.35 7 7 0.0067 1.5e+02 1.7 13.1 85 255 951 1122 930 1145 0.37
Sequence Information
- Coding Sequence
- ATGAAGAAACCACCACGGGAAGATCGCTTCCGGGCCCGTGAATGGGAACGTCAAGCGCGGGCTGCCCAAATGTCTTCCTCGGCGGTGGACCAGGATGGGACCCAGAGCGAGTTCCTCTTCAAGGAACCCGTCAAGGTGTCTCCGTCCTCCAAGGACCGCGTGTCGCACGCCATTCACAACACGCTGGGACCCTATGACCACGTGCGGAACTACCTGGACAAGGACTCGTCCGGGTTGATCGGAGTCGACGGGGTACCGCCCAGCCCGGCACCCGCGGTGCATTATTCGCCGCCCTTTAACGGCAGCACAGCCTCCAGGCTTCAGGCATCTCCCGATGCCAGGCACGAATTCAAGAAGCCCCACCAACAGATGCACCCCCCGCCGTTGACACACCAGCGGGGGGGCTACGTGAAACCCACGGAGGGCAAACCACCGTACGGGGGGCGCGGGAGCTACCCCGGCCAGCCAGTGAAGAGGGGCGCCGGCGGAACCGGAGGACACAGGACCAACGGCATAGTACCGGCGAAGGGGCCGCCCGCCCCCGTGCCCTTGGGTACACACAGACACGCTTTTGACATGAACCAGCCCCCCGTAACTGCCCCCAGAGAGTCGTTACCATCCGCCACACCGGGCCCGCAGGACGTAGATAATATATTCAAGGAGATGCGGATGCCGCGCGAACCGGTGTCGGCGATAGCAGCAACCCCTAGGATAGATACTGATAATAAGTATCAGTACAACCCTCTAGTAAAGATGCCGGAACCCATTGCGCCATTGATAAAGAAACGGGAACGGCCCACCACGTCTAGGTTACCGTCAACAGACCTACATAATGGGCTAGACTTGTCCGAGGACAGCGACGACGAAACAAAGAAGAACCACCACATACTGTCCGTAGACAAGATGCTTTCGCCCATACACCAAACACCGGCACCTCACCAGTCCAGTAAGTACTGCGCCTCTGAGCGGATACCAACGTTCGCGCCAGTGGAACCGGTGGCGGTTCCGCCTGAGCCGCCTGTCCTCGCGACCGCGGAACTGAAAGAAGGATCGGGCGCGTCCAGCAGCAGCGATTCCGGCTCGGACTCGGGCGAGTCGGACGACAGTGATTCCAGCAGCGAGGATTCGGTGGAGGAGCAGGTAACATCGCAGGCGACGGGCGCCGCTTCGCCTTGCGCGCCTCCGCCGCCCATACCCGAGTTGCAGGAGACGGCCGCGCAGTCCCCGCATCGGAACGACGAGCAGGAGAACCGTACCAGGTGGAACCTGGCCAGCTTCGTCAATAACCAGACGGAGACGATCAAGTCGCAGGGCTCGCCGACCACCTCGCCCGCCAAGTCGGGTGCCGTGCTGCGAGCCAGCCCCGACTCGAGGAAGCGGCCGGCCGAGAGCGACAGCGACTCGGAGGACTCGTGCAGCGACATCGACAAGGCCTTGGCCGATGTCAAACAGCTGGTCGCATATGTGAAGCGACCTATCGTGGGCTGGTCCGACAGCGATAACAAGTCCGACGACGCCGTGAGCAGAAAGAAGAAAAGACAAAGATCTCACCGAGTGCCTCCCCAATCCAGAGCTCGACTGAGCGAGAGCGACGACAGCGACTCGGATCATCCTGCCGAGAGGAGCAGTCCGTCGAAGATCGCCCCGAAACCGGTAGTGCGACCGAGCCCTCGTACTAAATCCGCGGGTTCCGCCAGCGACTCTGACACGGATCACCTACCACCGCCCAGTGCCAAAATGCCGACCGCCCTTTCCAAGGTCGCGCCTTCCGTCGTCGCGGCTGTCGCTCCCCCGATCTCAGCCGACCTCAGCGAGTCCGACTCGGATCACCAGCCGACTCCGCAGCAGCAACCCGCGACGGGACCCAAGATCTCCCCGGTAGGTGAACCACCTCCCGGCGTTCCCAAACCGAAGGGTCGCGGTCGTCCACGGAAGATCAAGGCCGAGGGAAGTGAGGGAGAAACGGTAAAGAAGCAAAGAGGAAGACCTCGGATGAGCAGAGAAGGCGAGGTAAAAAAGACAGGCAAACGGGGGCGACCGCCCAAGATCCGACAGTCGGCCCCGCCGAGCAGCTCGGACGACGAGGCCTTCGAGAAAACTTCCACGACGGTTCGCAAAACCAAAACGAAGGAGGAGTACAGCACGGATTCGGACAGTCCGCACCCATCCCCTGCCATAAGGAGGATGGGATATAAGCAGGATTCCGACAGGGATTCTGTGCCGTTCCACGCGTCGCCCACGAAACGGAAAGCGAAGACTCCTCAATTATCCGACGAATACAAAAAGTCGAAGCCGGAATCGGACGAGGAGTGCGGCGATAGGAAGAAGGACCGCCTGTTCCAGGACAGCCGATCGGACAGGAGCGAGTCGGAGTCGTCAAGTCGTCGCAAGCGCGAGAAAACCAAAGAGTCCACGTCGCCGTTCAGGCGGAAAGGGGCGAAAACGCAGGAGTACAAGAGCGTGGCGTTCATACCGACCTCGAGCGACAGCGACGAGGCCGGATCTCGTTCCGCGGCCAGAGCGAGGAAGAGCAGCGCCTCCGAGCATCACCAGGTACACCGTATCTCCGATTCGGAGAGTGATGCGGACATTGGACAGGTCAAGTTAGAGGCGGACAAGAACAGGAGGGACGGCAAGGCCGACAAGAACAAGAGCGATACGCTGCGGAAACTGTTTACGCCAAAACGAGACACCGAAGGTGGCGGAAAGGGCGGCGGCAAAGGAGGAAAAGGTGGTAAAGGGAAGGCTGGCGTTAATGTGATAATTGTAGATGGTGATTCGGAGAGAACCAGCTCGTCCGTGGAAGATGAAGCCATTCCCGCCATATCAAATACCAACCTCCTGTCGCCCATCGCCGCCAACGACGTCAAGCCGGCGGTGGAGCACACGAGCAAGGTCAAGGTCTCGTCGCCAAACGCGATAAAGACTGAAAACGTCGCGCCCGCGAGGTGTATGCCGGTCTCCATCGACCTGAATCGGTTCAACATTAATGAGATCCCGAAGCTGAAGCAGCACCTGCAGGCGACGAAACCGTGGCTGCTGGAACAGCGGGGCGGCGTCAAGGGATCGAAGTTGAAGGGCGAGCAGCCGAGTGAAGCGGACGTCGAAGACAAGCCGCCGCTGGACAACAGTCTGGAGAGTCGGAGATCGACGACGGACGATTCGAAACGTATGAAAAAGCGGAAACGGAAGAACAGCGGCAGTTCGGTATCGTCCATGTCGACGGTGAGCAGTAACATTTCGCACGCCAGCAAGAAGGACAAAGACAAAGAGTCCAATAAACACAAATCGAAAAGGAGAAAAGAAGAGCAGGACCTGTCGAAGGTGCCTCAGATTCGAACCCAGACTGAGAGCCTGACCTCGATCAACACACCGCCCACCAACCACGAGAGGGATCGTTTAGCACCCGGTCTGGACTCCATCATAGCTCCGTCGACGAGCAAGGGAAGTCCAGTGATGCGCGTCTACTACTCGTACTTTGAGAGCATGGAGGAGAATCCAGAAAGGGAGCTAAGGGATCAAAATCAGTACCTCGGCGAGGCACAACGGTTAAAGAAACAGGCCGTTAAGGAGAATAACACGATAAATCAGGGCCTGTTGTACTTGGAGGCTGTGCTATATTTCTTGCTTAGCGGCAACGCCATGGAGCATGAGAATTTCAATGACCAAACCCCCTTTACAATGTACATAACTACGTTGTCGCTCATTAAGTATATCACTCATCTGACGAACGACATCACCTCGTCGCTGAGCATCCGAAGCAAACTAGCCATTTTAACttaccGGTGCCAAGCCCTATTGTATTTTAAGATGTTCAAGATGAAAAAGCAGGAGTGCATGGAGGCACAGAAAATAATCTCGGACCACTACAGCAAAACCGAGCAGCCTTGCCCGGGACAGGGAACCCCCTCGCCCCTATCGCCCACCCCCTCCCCCGCGGGTTCGGTGAACTCGGTTGGCAGTCAGTCGTCGGGATATTCCAGCGGTGAGCTGACGTCCAAAGTCGGACCCCCCCAGCAGTCGGGGATGACGGCCGCTGGTGGCGTCTGGATACCTACGCACGTCAACAACGCGATGATAAAGCTGAACCAGCACTATAGCAACCTGCTCAACTACCAACAGATGTGGGAGACGGCGGACGATGCAGTCATCAACGGCAGGCACACGGAGTTTTTCATCGAACTGGACCGGTATTGCAAACCGCTGACCATGCACAGTTCGCTCATCGAGCTCGTCCGCTACGTCCAGGAGGGAATCAAAAGGCTGAAGAGAGAGGCCCACGAGGCGGCGTCCAACTACAACTGA
- Protein Sequence
- MKKPPREDRFRAREWERQARAAQMSSSAVDQDGTQSEFLFKEPVKVSPSSKDRVSHAIHNTLGPYDHVRNYLDKDSSGLIGVDGVPPSPAPAVHYSPPFNGSTASRLQASPDARHEFKKPHQQMHPPPLTHQRGGYVKPTEGKPPYGGRGSYPGQPVKRGAGGTGGHRTNGIVPAKGPPAPVPLGTHRHAFDMNQPPVTAPRESLPSATPGPQDVDNIFKEMRMPREPVSAIAATPRIDTDNKYQYNPLVKMPEPIAPLIKKRERPTTSRLPSTDLHNGLDLSEDSDDETKKNHHILSVDKMLSPIHQTPAPHQSSKYCASERIPTFAPVEPVAVPPEPPVLATAELKEGSGASSSSDSGSDSGESDDSDSSSEDSVEEQVTSQATGAASPCAPPPPIPELQETAAQSPHRNDEQENRTRWNLASFVNNQTETIKSQGSPTTSPAKSGAVLRASPDSRKRPAESDSDSEDSCSDIDKALADVKQLVAYVKRPIVGWSDSDNKSDDAVSRKKKRQRSHRVPPQSRARLSESDDSDSDHPAERSSPSKIAPKPVVRPSPRTKSAGSASDSDTDHLPPPSAKMPTALSKVAPSVVAAVAPPISADLSESDSDHQPTPQQQPATGPKISPVGEPPPGVPKPKGRGRPRKIKAEGSEGETVKKQRGRPRMSREGEVKKTGKRGRPPKIRQSAPPSSSDDEAFEKTSTTVRKTKTKEEYSTDSDSPHPSPAIRRMGYKQDSDRDSVPFHASPTKRKAKTPQLSDEYKKSKPESDEECGDRKKDRLFQDSRSDRSESESSSRRKREKTKESTSPFRRKGAKTQEYKSVAFIPTSSDSDEAGSRSAARARKSSASEHHQVHRISDSESDADIGQVKLEADKNRRDGKADKNKSDTLRKLFTPKRDTEGGGKGGGKGGKGGKGKAGVNVIIVDGDSERTSSSVEDEAIPAISNTNLLSPIAANDVKPAVEHTSKVKVSSPNAIKTENVAPARCMPVSIDLNRFNINEIPKLKQHLQATKPWLLEQRGGVKGSKLKGEQPSEADVEDKPPLDNSLESRRSTTDDSKRMKKRKRKNSGSSVSSMSTVSSNISHASKKDKDKESNKHKSKRRKEEQDLSKVPQIRTQTESLTSINTPPTNHERDRLAPGLDSIIAPSTSKGSPVMRVYYSYFESMEENPERELRDQNQYLGEAQRLKKQAVKENNTINQGLLYLEAVLYFLLSGNAMEHENFNDQTPFTMYITTLSLIKYITHLTNDITSSLSIRSKLAILTYRCQALLYFKMFKMKKQECMEAQKIISDHYSKTEQPCPGQGTPSPLSPTPSPAGSVNSVGSQSSGYSSGELTSKVGPPQQSGMTAAGGVWIPTHVNNAMIKLNQHYSNLLNYQQMWETADDAVINGRHTEFFIELDRYCKPLTMHSSLIELVRYVQEGIKRLKREAHEAASNYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -