Rexs019837.1
Basic Information
- Insect
- Rhorus exstirpatorius
- Gene Symbol
- Trl
- Assembly
- GCA_963564615.1
- Location
- OY751321.1:21453490-21461742[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.46 5.5e+03 -2.0 0.5 15 42 132 160 127 162 0.72 2 2 2.3e-11 2.7e-07 31.0 0.8 16 44 346 374 327 379 0.78
Sequence Information
- Coding Sequence
- ATGGGTAGCAGTAGTCAGCAACTGTACAGCCTCTCATGGGGTGAGTTTGGATCCTCGCTAGCGTCAGCGGTTCAATTGCTCAGGGGCCAGGGAGATCTCGTAGATGTTACGTTAGCGGCTGGCGGAAGAAGTTTCCCAGCTCACAAGATTGTTCTCAGTGCGGCGAGTCCCTTTCTCCTGGATTTGCTTAAGAGTACGCCATGTCAGCATCCGGTTGTTATGCTCGCCGGCATAGGGGCTGAGGATCTCGAGTCTCTACTGGAATTCGTTTACAGAGGCGAAGTCAGCGTCGAACCTTCTCAGCTACCTTCTCTCTTACAAGCCGCTCATTGTCTCAGCATACACGGTCTTACGCCGCCTACTATACTCACGGAAAACGGTGAGGAAATTTCGCCGTCTTCGATACCTCAGAGCGCGGAGCCGCTGACCCGAGAGGTCATGAATTCGTGTATTCCGATGCAGCGAAGAAAGAAGAGGAGgaagtcgtcgtcgtcgtccggcAAATGGCCTCGCGGCGATCACGGTGACAACGACGAGCGCGGCCATGACGGTCATCACGTTAACGAGAGAACCAACGATTATGAGCACAACAAGGACGGCGAGGGTGGATCGCACGACGACATGGCGGGCGTATCGTCGCCGCCGGAATATGTCAATCATCGGAGCACCAATTGGCATCCGGCGTCTCATCAGGCCCCGCCGATGATGCCGAGTCCAGAAAATTCGCATCAtccgcatcatcatcatccgtCGTTGCTTCATCAGCATCAACAACACCAACAACACCAACaccaacaacaacagcaacaacagcaggaACAAATGTCGGAGGTAAAGCCTCATCTTCACACGCTGATGCCGATGCAGCAATACTCGCCGCTGCACATACCGTCGTTTCCCGGCTCTCTCGGCGTCGGTTATCCATCCGGCGTGCCGATACTGCCGGGTTCGCTTTCCGCAGCTGCCGCAGCGGCTGCCTCCGCATCCGCCTCGACTTCTCCCCCCGGCGCTAGCGCAAATTCCAGCGGTTCATCGAAAATTCGCGGCGCATCCGATTGCCCGGGCGTTTGTCCGCTTTGCGGAGCGACGCTGCGACAAGCGCGCAACTTGCGCAGGCATTTATTGTCATCGTGCAAATATCGTTTCAATTCTCATCCCAGCGCGCCATCAAACGCCGAAACTATCGAGATAAAACCGGAAGTCGAGATACCCGGTTATACCGGAAATTCCATGAATTATGCGACCGACAGCGGCGGGAGCAACAGTTGCGAAAGAATAATTTGCAAACCGAGTCCGCTGCCTTCGCCGTCGCCTCACGGCTCGAACGTTGTCTCGCCGCACAGTAATATTCCATCGCCTACGATAGCCAGATGA
- Protein Sequence
- MGSSSQQLYSLSWGEFGSSLASAVQLLRGQGDLVDVTLAAGGRSFPAHKIVLSAASPFLLDLLKSTPCQHPVVMLAGIGAEDLESLLEFVYRGEVSVEPSQLPSLLQAAHCLSIHGLTPPTILTENGEEISPSSIPQSAEPLTREVMNSCIPMQRRKKRRKSSSSSGKWPRGDHGDNDERGHDGHHVNERTNDYEHNKDGEGGSHDDMAGVSSPPEYVNHRSTNWHPASHQAPPMMPSPENSHHPHHHHPSLLHQHQQHQQHQHQQQQQQQQEQMSEVKPHLHTLMPMQQYSPLHIPSFPGSLGVGYPSGVPILPGSLSAAAAAAASASASTSPPGASANSSGSSKIRGASDCPGVCPLCGATLRQARNLRRHLLSSCKYRFNSHPSAPSNAETIEIKPEVEIPGYTGNSMNYATDSGGSNSCERIICKPSPLPSPSPHGSNVVSPHSNIPSPTIAR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01306640; iTF_00266593; iTF_00266850; iTF_00266120; iTF_00265865; iTF_01129476; iTF_01129730; iTF_00439878; iTF_00439622; iTF_00828907; iTF_00829644; iTF_00829902; iTF_00829151; iTF_00263637; iTF_00263942; iTF_01057785; iTF_01058034; iTF_01299673; iTF_01299410; iTF_01509245; iTF_01509002; iTF_00262782; iTF_00263018; iTF_00798944; iTF_00798711;
- 90% Identity
- iTF_01306640;
- 80% Identity
- iTF_01306640;