Rpad004525.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhopalosiphum padi
Gene Symbol
-
Assembly
None
Location
scf7180000008919.181943:27653-43391[-]

Transcription Factor Domain

TF Family
MBD
Domain
MBD domain
PFAM
PF01429
TF Group
Unclassified Structure
Description
The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.9e-15 1.7e-11 44.1 0.0 9 72 155 224 150 227 0.94

Sequence Information

Coding Sequence
ATGAAGAGGAAGAAATCTGCTGGTTTAAAAAAAACCAATAATCTTTTAAACCTAGAAGCAAATTTTATTGGATTTGATATTGATGATGAAGTATTGATAAGATTTAAAAATAAGAAAAAATTATTAAAAATGGAACTTAGTAAAGAAACAGGTGAGCCTATGGAAGTAGAAGAGCCAACTGACAGTCCATCCATTGTTCATAATAATCATGTTAATAAAAAGAAACAATCTAAATCAAGTATATCAACACCAGGACCTAATGATATAAAGAATAATCGGTGTAATAAGAGGCATAAGAATGATAACACACGCAGTGATACCTTAGAATCTTTGAAATTACATGTTCCGCCTTCTTTAGAACTTACCACTCCTACATTAAGTTTAATTTCTTCTTCTAACACTAAAACGCGCCATAGTAGAGACAATAAGATTAAGCCGAATATTAGTAATAATATTTTTAAACTTCCATTTGAGCATGGATGGAAACGAGAATTAGTATACAGAACGTCAGGTGAATCTGCTGTTCTTAATCGGGCACATAACAAAGCTGATGTATACTATCATTCTCCAAATAACCAAAAACTACGATCATTACGAGAAATTCAGGAACAATTGAATATCTTATCTGATAAAACTTCTCTTACTGTAGACTGTTTTACTTTTTCAAAAAAACCAATTGGCGTCAATGATAAATCAAAAGAACTGATCAGAGATGCACATTTCAAATCATTTAAGCACGACACTACTGCTGGTGGTGCTGTTCAACCTAAAAAATCTAAAACACCTAAACAGCGCTCACCATTTGATTGTGAATTGACAGGTGATGGCAACAAAAAGTCTGCTAGTAAAATGGTTTTTAAAAATGGGAAGACTTCCTCAAGATCAAGATCCAAAAAAGGGAATTCAAAATTAAAGAAGCTGCGAGCTATTCAATCTATTGTATCGGGAAAACTTTATCTTAAACTTGAGATCGTTGATTTTATGAAAAAACGGTTGGCAATATCAGATAGGAAAATCATCATGCAGTCTCGTTGTGGTAAGCCGTGCTCTAATATTGATGTGCCTTGCTCTTTAGCGTGTACTCGTTGTCTAGTACAGTATCATTCAGAATGTGTCAACATAAATGCTCATTTAAAAATTGTTGGTTATGTATGTTTAGACTGTCGAATTAAAATGAAACAAAGAGATACTCGTATACAGTCATCTAATACTTTGGTTGTTGGTGCTACTGAACCGGAGAAACTACGCGTTGAACCGATTCGTATAAGACAAGTTCATCAAGCACCAAGTACGCCAATTTCTAAAATTGAAGAACCACATTATGAAAATGATGAATATAGAGATGGAAATGTATTCAAAACTAAAATGGTTGATGGTACTTTTCACGAACAGTATGTTTATGAAATAAAACAAACACGAGAACCTAGTTTAATGACTTGTGTTATTCAAGAGCCCAAAAATTTGGAAGAGAATTCTGAAATGAATGGTTCATTTAAAGAAATGTCAACTCCTTTGGCATCCATGCAAACATTAAGCTACATGGTTAAAGCATTGGGACACGTTTTTAAATATTTAAATACACATGAGCTTTTATCCGCTTCTAGAGTATGTACCGCCTGGAATATAATTGCAATGAACAAGTCATTATGGCAAAATGTTCGTTTAAAAAATTCTATGGTCTATGACTGGGAAAGGTTTTTAGACTCTATTGATCAACAAAGAACTGATACTTTAGATACTAGACAAATGTCGATACCTGTACAAATTCATAAAATCAAAAATTTTTGGTTGCATTTTTCCAAAGCAATGAAAAGAGCACAGAAGTTAAAATTCATAGAATTGTATAGATGTCCTATCCATGTAGTTGAAGATATTATTCACTCATTACCTCAACTTGAAGTACTTAATGCAACTTCAATAAAAAATCCAAATGTAACAAAAAAGGCGAAAAATTTCAATGATCTTATGGCCCTAAACTTAAATTATTTAGGCCAAATGACAAAGCTCACTGAGTTAAGACTAAAAGGTTTAACTGGAATTACATTAATGTCATTGCCATCATTTGAAAATTTAATAAATTTAAATAAATTTTCATTAACCTCTATAGATTCATTTCCAAAAAACATCTGTCAGAGTTTGAATACTATTACTGATAACATAGAGTTTTTAGAAATTGGTGATTGCAATTTATTATCAAAAGATTTTGCCGTATCACTAAAAAGATTTGTCAATTTGAAATCGTTGAGATTGGAAAATTGTTACGGTAAATGGGAAAGTTATGCACAAGACGTTTTAACTGCTATTAGGGGTCTTGAAAAGCTCACTATTCTGGAATTGGTAAACATAGAATTCAGTAATTGTGTTGAAGATGAATTGGAAAAATGTGTTGGCATTAAAGCTTTACTGATTATTCCTGCTTATATGAGCAAATCTGCAACTACCAACTGCCACTTGATTGACTGCCTCGAGAAACTCTCCAAGACATTAACACACTTGGTTTGGGGATTGACACGTGAATTACTCATCGCTACTGACTTATTTATAACTCAATATCAACGAAACCAGCATAGTATTGGTTATAATTTAGAATTATCCCATACCAAAGAAAAGACCAACTACATACCTATTCTAAGGACAAGACATCCCAGACAGCGACCAGGAGAAGAGTCTGCTCCCGAAAAGGACAAGAATCAAGACAAATCAGATGACGTTAATTTACTTTCAATTCCTGCTCTAGAGAAATTGTTAAATACAATGATGCCGGATGCTAAAACTAGGCTTAATATCCAAGCTTTTTTAAAGGTTATTGATCCTCGAAATAATGATATTGGTTTGTTTATTAATGCTATTGGCGGTAGTTTGACAGATGAGCAAAAGCACCTATACAATTTCAAAAAAATTGGCAATATATTACTTAAAAAAACTCTAAATTGGCTGTTTGACACTTTGGACAAAAAATTCCCGTATTATCACTCTTGCGTCCTTTCCCTGAGTTTTCCGGAGAAGTCTGGAAATTACGTTAGTGAACAGCAGGGCCGGCGAAAACTATGTGCGACTTGGGCAACTGCCCAGGGCACCAGCACGGAAGGGGCGCCAAACTGA
Protein Sequence
MKRKKSAGLKKTNNLLNLEANFIGFDIDDEVLIRFKNKKKLLKMELSKETGEPMEVEEPTDSPSIVHNNHVNKKKQSKSSISTPGPNDIKNNRCNKRHKNDNTRSDTLESLKLHVPPSLELTTPTLSLISSSNTKTRHSRDNKIKPNISNNIFKLPFEHGWKRELVYRTSGESAVLNRAHNKADVYYHSPNNQKLRSLREIQEQLNILSDKTSLTVDCFTFSKKPIGVNDKSKELIRDAHFKSFKHDTTAGGAVQPKKSKTPKQRSPFDCELTGDGNKKSASKMVFKNGKTSSRSRSKKGNSKLKKLRAIQSIVSGKLYLKLEIVDFMKKRLAISDRKIIMQSRCGKPCSNIDVPCSLACTRCLVQYHSECVNINAHLKIVGYVCLDCRIKMKQRDTRIQSSNTLVVGATEPEKLRVEPIRIRQVHQAPSTPISKIEEPHYENDEYRDGNVFKTKMVDGTFHEQYVYEIKQTREPSLMTCVIQEPKNLEENSEMNGSFKEMSTPLASMQTLSYMVKALGHVFKYLNTHELLSASRVCTAWNIIAMNKSLWQNVRLKNSMVYDWERFLDSIDQQRTDTLDTRQMSIPVQIHKIKNFWLHFSKAMKRAQKLKFIELYRCPIHVVEDIIHSLPQLEVLNATSIKNPNVTKKAKNFNDLMALNLNYLGQMTKLTELRLKGLTGITLMSLPSFENLINLNKFSLTSIDSFPKNICQSLNTITDNIEFLEIGDCNLLSKDFAVSLKRFVNLKSLRLENCYGKWESYAQDVLTAIRGLEKLTILELVNIEFSNCVEDELEKCVGIKALLIIPAYMSKSATTNCHLIDCLEKLSKTLTHLVWGLTRELLIATDLFITQYQRNQHSIGYNLELSHTKEKTNYIPILRTRHPRQRPGEESAPEKDKNQDKSDDVNLLSIPALEKLLNTMMPDAKTRLNIQAFLKVIDPRNNDIGLFINAIGGSLTDEQKHLYNFKKIGNILLKKTLNWLFDTLDKKFPYYHSCVLSLSFPEKSGNYVSEQQGRRKLCATWATAQGTSTEGAPN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01304187;
90% Identity
-
80% Identity
-