Rpad015715.1
Basic Information
- Insect
- Rhopalosiphum padi
- Gene Symbol
- -
- Assembly
- None
- Location
- scf7180000008514.75156:32372-39238[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.4 1.3e+04 -3.6 0.0 49 57 28 36 24 44 0.76 2 3 6.3e-16 1.8e-12 47.2 0.0 9 71 132 200 127 204 0.95 3 3 0.16 4.8e+02 1.0 0.0 44 76 285 325 254 326 0.79
Sequence Information
- Coding Sequence
- ATGAATCAAATTAATGTCCTCGCAGACCGTGCCTACTTCCAATTCCAAAACCATAGAATTGCAATCGTATCCGCTGCCCGTGTCGAGCGCTACATACACTCGACGGCCCTTCCCGTATACGAATTCCTGCAGAGTGCAGACCGGTTCCATCCAACATTGTGCTCTGATATTTTCGTTTCGTCTTCACCCGTCAGTCGTTTTCGAGTCGCATTTTTCGACACTTGTACTTTATTTTTGTTTGTCGCCGACGTCTTCATCGTAAAAGTCTCCAGAATAGTCATAATTTCATCATCAACTGTAGGAAACGTTGGGTATTTTGATATTGTAGCTTCACTATTTGCTGCTTCATTGCTACTGAAGATGAAAAAAAATATTAAAGACGATATTTTTAAACTTCCATTTGAGCATGGATGGAAACGAGAATTAGTATACAGAAAATCAGGAAAATCTGCTGTTGTTAATCGAGCCAATAGAAGAGCTGATGTATATTATCATTCTCCAAATAACCAAAAACTACGATCATTACGAGATATTCAGGAACAATTGGATATGTCATCTGATAAAACTTCTCTGACTTTGGACTGTTTCACTTTTATATCACAACCAATTGGCTTAAATGATAGATCAAAAGAACTGATTAGAAATGCACATTTCAAATTATTTAAGAAAAACGCTTCTGTTAGTGCTGCTGTTAAACCTAAAAAATCTAAAACACCTAAACAGCGCCCACCATTTGATTATGAATTGAAAGGTAATGGAAACAAAAAATCTGCTAGTAAAATGAAAATTGTTTTTAAAACTGCGAAAACTTCTTCAAGATCAAGTTCCAAAAAAGGGAATGCAGAATCAATAGATACATCTTCATCCACAACTGAATACATATCTGAAAACCTGCAAGCTATTCAATCTAGTGTATTGACAAAAGTTTCTCCTAAACTTGAGAACATTGATATAAATACCACAATTATGAAAAGACGGTAA
- Protein Sequence
- MNQINVLADRAYFQFQNHRIAIVSAARVERYIHSTALPVYEFLQSADRFHPTLCSDIFVSSSPVSRFRVAFFDTCTLFLFVADVFIVKVSRIVIISSSTVGNVGYFDIVASLFAASLLLKMKKNIKDDIFKLPFEHGWKRELVYRKSGKSAVVNRANRRADVYYHSPNNQKLRSLRDIQEQLDMSSDKTSLTLDCFTFISQPIGLNDRSKELIRNAHFKLFKKNASVSAAVKPKKSKTPKQRPPFDYELKGNGNKKSASKMKIVFKTAKTSSRSSSKKGNAESIDTSSSTTEYISENLQAIQSSVLTKVSPKLENIDINTTIMKRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -