Rpad012100.1
Basic Information
- Insect
- Rhopalosiphum padi
- Gene Symbol
- -
- Assembly
- None
- Location
- scf7180000008899.160130:27819-39435[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.5e-17 4.4e-14 52.4 0.0 9 72 297 366 292 369 0.95 2 3 1.3 3.9e+03 -1.9 0.0 28 38 444 457 429 461 0.71 3 3 5.7e-15 1.7e-11 44.1 0.0 9 72 481 551 477 555 0.91
Sequence Information
- Coding Sequence
- ATGGAACTTGGTAAAGAAGCAGGTGGACCTATGGAAGTAGACGAGCCAACTGACAGTCCATCTATTGTTCTACAATCTAAACATTTGGAAACCAATAATCTTTTAAGCCAAGAAGAACATTTTATTGGATTTGATATTGATGATAGGTTTTCGAAAACATTGCAAAAAAAGATACGATTATTAAAAATGGAACTTGGTAAAAAAGCAGGTGGACCTATGGAAGTAGACGAGCCAACTGACAGTCCATCTATTGTTCTACAATCTAAACATTTGGAAACCAATAATCTTTTAAGCCAAGAAGAACATTTTATTGGATTTGATATTGATGATAGGTTTTCGAAAACATTGCAAAAAAAGATACGATTATTAAAAATGGAACTTGGTAAAAAAGCAGGTGGACCTATGGAAGTAGACGAGCCAACTGACAGTCCATCTATTGTTCTACAATCTAAACATTTGGAAACCAATAATCTTTTAAGCCAAGAAGAACATTTTATTGGATTTGATATTGATGATAGGTTTTCGAAAACATTGCAAAAAAAGATACGATTATTAAAAATGGAAATTGGTAAAGAAGCAAGTGGACCAATAGAAGTAGACGAGCCAACTGACAGTCCATCCATTATTCATAATAATCATGTTAATAAAAAGAAACAATCTAAATCAAGTATATCAACACCAAGATCTAATGATACAAAGAAGAATCGGAGTAATAAGAGGCATAAGAATAACAACAAACGCAGTGAAACCTTAAAATCTTTGGAATTATATATTCCTTCATCTTCAGAACTTACTACTCCTAAATTTAATGTGTATTCTACTAACACTAGAATACTCCGTAGTGCTGGCAGAACAGTTAATTATAATATCAAAGATGCCATTTTTAAAGTCCCATTTGAGCATGGATGGAAACGTGAATTAATATACAGAACATCAGGAAAATCTGCTGTTGTTACTCGAGCCAATAGAAATGGTGATGTATACTATTATTCTCCAAATGGCCAGAAACTACGATCATTACGAGAAATTCAGGAACAATTGGATATTTCATCTGATAAACCTTCTCTTACGATCAACTGTTTTACATTTTTAAAACAACCAATTGGCATGAATGATAGATCAAAAGAACTGATCAAAGATGCAGATTTAAAATCATTTAAGGATGACACTACTGTTGGTGTTGCTGTTCAACCTAAAAAATCTAAAACACCTAAACAGCGCCCACCATCTAATTGTGAATTGACAGGTGATGGAAACGAAAATTCTGCTAGTAAAATGAGACTTGTTTCTAAAAAAGCGAAGACTTCCTCAAGATCAAGATCCAAAAAAGAACTTAATACTCCTAAATTAAATATTGCATATATCGCTCCTCCTAAAACAAAAGAAGTCCATTGTCTAGTAACAGATATTCATTCTCTTATTCCCGGATCTATTTTTAAACTTCCATTTAAGCATGGATGGAAACGAGAATTAATATACAGAACATCAGATGGATCTGCTGTCGTTACTCAGGCCAATATAAGATTCGATATTGTATACTATTATTCTCCAAATGGCCAGAAACTACGATCATTACAAGAAATTCAGGAACAATTGGATATTTCATCCGATAAAACTTCTCTGACTATAGAATGTTTTACATTTTTAGCACAACCAATTTTCTTGTATGATGAACATAAAGAACGAATCAGAGATGCAAATTTCAAATTATTTAAGGAAGAGACTATGGATGATATGCTGTTCTACTACAAAAATCTACAACACCTAAACAGCTACCACCATTTTATTATGAATTGA
- Protein Sequence
- MELGKEAGGPMEVDEPTDSPSIVLQSKHLETNNLLSQEEHFIGFDIDDRFSKTLQKKIRLLKMELGKKAGGPMEVDEPTDSPSIVLQSKHLETNNLLSQEEHFIGFDIDDRFSKTLQKKIRLLKMELGKKAGGPMEVDEPTDSPSIVLQSKHLETNNLLSQEEHFIGFDIDDRFSKTLQKKIRLLKMEIGKEASGPIEVDEPTDSPSIIHNNHVNKKKQSKSSISTPRSNDTKKNRSNKRHKNNNKRSETLKSLELYIPSSSELTTPKFNVYSTNTRILRSAGRTVNYNIKDAIFKVPFEHGWKRELIYRTSGKSAVVTRANRNGDVYYYSPNGQKLRSLREIQEQLDISSDKPSLTINCFTFLKQPIGMNDRSKELIKDADLKSFKDDTTVGVAVQPKKSKTPKQRPPSNCELTGDGNENSASKMRLVSKKAKTSSRSRSKKELNTPKLNIAYIAPPKTKEVHCLVTDIHSLIPGSIFKLPFKHGWKRELIYRTSDGSAVVTQANIRFDIVYYYSPNGQKLRSLQEIQEQLDISSDKTSLTIECFTFLAQPIFLYDEHKERIRDANFKLFKEETMDDMLFYYKNLQHLNSYHHFIMN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -