Rpad008310.1
Basic Information
- Insect
- Rhopalosiphum padi
- Gene Symbol
- -
- Assembly
- None
- Location
- scf7180000008194.29681:4046-6277[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.3e-10 7.5e-07 29.3 0.0 1 37 51 87 51 92 0.91
Sequence Information
- Coding Sequence
- ATGATTCGCAAAATTTTAAAGCTGCAAAAGTGGTATTTCAGCTTCAAAATTCAAGGGTTGGTTTTATTTTCCGTAAAAAATAATTGGGTGACTTGGAACATGCCGAACTATTATAAACGAACACCCGGCAGTCGTACTTACCGAAATTTTTCTGAAGAAACTTTAGATAATGCATTGAACGAAATCCGAAATTATAGATTGACTTACCGACAGGCTTCTGATAAGTATGGAATACCAATAAGCACTTTAAGTAGGAAAAAAAACCAACTAAATCTTAATCCCCACGGTGGCCAAACAGCTTTAACTTCCACTGAAGAAGGTAATATTGTAGAAACAATATTATTTGCATCTGATTGGGGTTACCCTTTTGATAGGGAAGAAGTTAAGAGATTGATCAAGTCATACTTAGATCGTTCCGGCCGAAAAATAAAAATATTTAAAAACAATAAACCTGGCGATGATTGGTACACACGTTTTGTATCCAGACATTCTGGTCTTTTGAAACCTAGACTTTCCGAGAATATCAAAAGATCACGAGCTGCTGTCTCAAGAACTACTATCAATGAATATTTTAATAACCTTGAATTAAGTTTAGAAAATGTACCACCGCAAAACATCATTAACTACGATGAGACAAATTTTATAGATGATCCGGGTAGAACAAAAGTTTTAGTGAGAAAAAAAAATAAACATGCTGATTCAATTATGGATTCTACAAAGTCTGCTACATCGGTTATGTTTGCTATCGATGCATCTGGTGTTATGCTTCCTCCATATGTTGTATACAAATCCCTCCAGATGTGGGAACCTTGGACATTAGGAGGGCCAGAAGGGTGCAGATACAACAGATCACCCTCTGGGTGGTTTGATCAACCAATATTTGAAGAATGGTTTCAAACTTTAGTTATTCCACATTGCCGTCGTTTGGTTGGAACTAAAGTTATTATTGGAGACAACTTGGCAAGTCACATTTCGGTGAATATTGTTAAGCTCTGTAAGCAACATGATATTAAATTTATATTTCTGCCCCCAAACAGCACACACCTGACTCAACCATTGGATGTGTGTTGTTTTCGGCCTATGAAAATAGCATGGCGTAAAGTTTTGAAGATGCATAAATTAAAAAGAAAAGGACCACTTACAAAAGATGTGTTTCCAAGTATACTAAAAAAAACATTAGAAAAACTTGAAATTTCTCAATCTGATAATATTAAATCTGGATTTAAAGCTACTGGCATATACCCGTTAGACCGAGAAAAGGTATTAAATAAATTACCAGACGATCCAAACTCATCCACAAGCTCTTCTATTATTCCACAAGTACTTCACGATTTATTTAAAGAAACAAGATTTGGTTCTAACGATGGACCAGCAAAGAAATGCAGAAGAAAAAGATTTAATATAGAGCCAGGTCGGAGTGTAACCGAAGCTAATATGTTTAATGAAGAAGAAGTCCGAGACACAGAAGGTTATAATGAAGAAGAATTAAACACAGATACCACTGAAATTAACACTAATGTGACTGAACTAAATAAAAATAATGAAAATAACTATGAGACTGAAGAAATTTATGAGACTGAAGAAATTAATGAGACTGAAGAAATTAATGAGACTGAAAAAAATGATGAGACTGTAAATATTAATAACCTAATAATTGATGATTTTGTTAAGGTAAAATTTGAAACTGTAAGAGGCAACTTTGAAGAATATGTAGGACAAATTACTGAAATAGAGGAGGATAATTTACTGTGCCGGTTCCTTAGAAAGAGCCAAAGTATGAGAGGATGTTTTTCTTTTCCTTTCATAATAGATGAAGCATATGTTGGAAAAGACCAAGTTATAAAAAAATTAAAGGTCATAAAAGAAAGAAGAGGCAACTATCAGTTTGAATAA
- Protein Sequence
- MIRKILKLQKWYFSFKIQGLVLFSVKNNWVTWNMPNYYKRTPGSRTYRNFSEETLDNALNEIRNYRLTYRQASDKYGIPISTLSRKKNQLNLNPHGGQTALTSTEEGNIVETILFASDWGYPFDREEVKRLIKSYLDRSGRKIKIFKNNKPGDDWYTRFVSRHSGLLKPRLSENIKRSRAAVSRTTINEYFNNLELSLENVPPQNIINYDETNFIDDPGRTKVLVRKKNKHADSIMDSTKSATSVMFAIDASGVMLPPYVVYKSLQMWEPWTLGGPEGCRYNRSPSGWFDQPIFEEWFQTLVIPHCRRLVGTKVIIGDNLASHISVNIVKLCKQHDIKFIFLPPNSTHLTQPLDVCCFRPMKIAWRKVLKMHKLKRKGPLTKDVFPSILKKTLEKLEISQSDNIKSGFKATGIYPLDREKVLNKLPDDPNSSTSSSIIPQVLHDLFKETRFGSNDGPAKKCRRKRFNIEPGRSVTEANMFNEEEVRDTEGYNEEELNTDTTEINTNVTELNKNNENNYETEEIYETEEINETEEINETEKNDETVNINNLIIDDFVKVKFETVRGNFEEYVGQITEIEEDNLLCRFLRKSQSMRGCFSFPFIIDEAYVGKDQVIKKLKVIKERRGNYQFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00940329;
- 90% Identity
- iTF_01305472;
- 80% Identity
- -