Rpad023550.1
Basic Information
- Insect
- Rhopalosiphum padi
- Gene Symbol
- kn
- Assembly
- None
- Location
- scf7180000008507.548383:310586-393960[+]
Transcription Factor Domain
- TF Family
- COE
- Domain
- COE domain
- PFAM
- AnimalTFDB
- TF Group
- Helix-turn-helix
- Description
- This is the helix-loop-helix domain of transcription factor COE. It is responsible for dimerisation [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-240 4.7e-236 785.2 3.3 8 563 36 612 29 620 0.83
Sequence Information
- Coding Sequence
- ATGTTCGGCCTGCACCACCACCATCACCAGGACACCGGAACGCCCGGTGGTATATCCGGACTGCACCATCATCACCACCATCACCACCATCACCAGCTCCGGGGCCCGGTTACCGGGCTCAAGGAAGAACCTTTGGCCAACTCGCAGCTGTCCGTTCCCCGTTCATGGATGCAACCTTCCATCATCGATCAGAGCAGTATCGGCGTGGGAAGAGCACATTTTGAGAAGCAACCTCCCAGCAATCTGAGAAAATCCAATTTCTTTCATTTCGTGATCGCGCTGTACGACAGGTCTCAGCAGCCAATCGAAATTGAACGGACCGCGTTCATCGGATTCATCGAAAAGGATCAGGAATCCGAGTCACAGAAGACCAACAACGGTATTCAGTATAGACTTCAGCTGTTGTATGCTAACGGTGTGCGACAAGAACAAGACATATATGTGAGGCTCATCGATACCGTTACCAAACAGGCCATCATTTACGAGGGTCAAGACAAGAATCCTGAGATGTGCCGGGTGCTGCTAACGCACGAAGTCATGTGCAGTCGATGCTGTGATAAGAAAAGTTGCGGCAACAGAAACGAAACGCCATCCGATCCGGTCATCATCGACAGATTTTTCTTGAAGTTTTTCTTGAAATGCAATCAAAATTGTTTGAAAAACGCTGGAAATCCCAGAGACATGCGAAGGTTTCAAGTGGTCATTTCAACACAAGTTACGGTTGAAGGTCCTCTGTTGGCTGTATCGGATAACATGTTCGTACACAACAATTCAAAACACGGACGCCGAGCAAAACGTTTAGACCCAAATGACGGTATGTTTTCTCCTCTACCCGTGGCGACACCGTGTATAAAACACATTACACCGAGCGAAGGATGGACCCACGGCGGAGCTTCGGTCACTATATTGGGTGATAATTTTTTCGACGGGTTGCAAGTGGTTTTCGGCAGCAATCTAGTTTGGAGCGAACTATTGACTCCACACGCCATACAAGTGCAAACACCGCCCAGGCCCATACCCGGCATCGTAGAAGTAACGCTGTCGTACAAATCCAAACAGTTTTGTAAAGGATCTCCCGGCAGATTCGCGTACATATCACTCAGCGAACCTACCATCGATTACGGTTTCCAAAGACTACAAAAATTTGTACCCAGATATCCAGGTGATCCCGAAAAACTACCAAAGGAAGTGATCCTGAAGCGTGCGGCGGATTTAGCGGAAGCGCTATACACGATGCCCCGAAACAATCAGCTTTCGCTATCGCTGCCCAGGTCGCCGTGCTCGCGGGACAGGGACAGCAACAACATGTCGACGTCGGCGGGGGCGGTGGGCACCGGGTTCAACCCGTACACCGGACAGCTAGCGGTAACCGTACACGACCACGGTGCTACTGGTCAATGGAACGACGACGATTACGGACGCGGTCAGAGCAGCAGCGTGTCGCCCCGAGGCGGCGGTTACGGGTCCAGCGCATCGACGCCGCATTCGACCAACGGCACGAACGGAAGCACGTACATAAATCCGCCACCAACCAGTGGTGGCGGTGGCGGTGGTGGTGGCGGTGGAGGCGGCGGAAGCGGCGGCGGTGGCGGAGGCGGTGGAAACCCGTCCAATTCCGGTCCCAACAACGGTAACGGAGGAAATTCCGGTTACAACGGTTCCACCATGCCTAACACCACATCGGCCGCGTCGTCCGTTCAACTGACCAACATGAACTCGCCCACGGCCACTTCGCACCCATCACTCTTCAACTCTTCCTCGAGAATGGGCACTTTGGTAACATCACCGTTCGCAATGAATCCGTTCGCTTTACCAAACTGCAACGGACAGCCGTACGCCACGAGCCCGTTAATCAGCTCGTCAGCGAAATAA
- Protein Sequence
- MFGLHHHHHQDTGTPGGISGLHHHHHHHHHHQLRGPVTGLKEEPLANSQLSVPRSWMQPSIIDQSSIGVGRAHFEKQPPSNLRKSNFFHFVIALYDRSQQPIEIERTAFIGFIEKDQESESQKTNNGIQYRLQLLYANGVRQEQDIYVRLIDTVTKQAIIYEGQDKNPEMCRVLLTHEVMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVISTQVTVEGPLLAVSDNMFVHNNSKHGRRAKRLDPNDGMFSPLPVATPCIKHITPSEGWTHGGASVTILGDNFFDGLQVVFGSNLVWSELLTPHAIQVQTPPRPIPGIVEVTLSYKSKQFCKGSPGRFAYISLSEPTIDYGFQRLQKFVPRYPGDPEKLPKEVILKRAADLAEALYTMPRNNQLSLSLPRSPCSRDRDSNNMSTSAGAVGTGFNPYTGQLAVTVHDHGATGQWNDDDYGRGQSSSVSPRGGGYGSSASTPHSTNGTNGSTYINPPPTSGGGGGGGGGGGGGSGGGGGGGGNPSNSGPNNGNGGNSGYNGSTMPNTTSAASSVQLTNMNSPTATSHPSLFNSSSRMGTLVTSPFAMNPFALPNCNGQPYATSPLISSSAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00418071;
- 90% Identity
- iTF_00135944;
- 80% Identity
- iTF_01303972;