Rnym003355.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- Hr39
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000006.1:8422452-8428654[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.13 8.1e+02 -0.4 6.9 45 189 130 286 85 321 0.61 2 3 1.2e-07 0.00074 19.5 0.1 1 69 402 471 402 509 0.79 3 3 4e-71 2.5e-67 228.6 0.1 205 408 514 712 495 712 0.96
Sequence Information
- Coding Sequence
- ATGGCCGACAGCGACACCAGGATGTGGGGCCACAGCGTGCAGGTATCGTCCGGCCCGGTCACCGTCACGTCCATCAATCTGATCGCTCCTCGCCTGCAGCCCAACGCGCAGATCACCACGATTAAAGAGGAACCTCATGACAAGGACAGTACAATGACCGAAATAAAAGATGACATCATCGATGAAGTCGGTTCTGAATGCGATAGGGAAGTAAGTAAGATCGACTTCTCAGGAGTTACTAtgagaagtaaaaaaatgagAGCGGTTGAAGAAAACATGCCTCGGCCAATGTCCTGGGAAGGAGAACTATCCGATTCGGAAATGAAACAAGAAGAAGATAGGACAGTGGACGTGCAGACAgcgaatcaaaattatttactaccgcgaaatgaaaatgtaaataaccAACAAACGTCCCCAGTTAaacgaattatttataatgataataacttggtTGACCGAGTGATGGAGCATGTCAAGAGCAAAGTAACTTCGTCAAACAACGACATTCCGTTACTTGTTGATAAATTGTTAGGTGGCGGTTACAGCCCATTACTTCAACACAGAACAAATGGAATTAAACAGACATCACACATTCCACCGACTCAAAGCCCAGATTCGGCCATACACTCTTGTTGCTCACCTGCACAGTCACCAATCACTTCCAGACATAATCCTCCGTCATCCTCAGGGTTTTCGTCCCCGTCTACATTCACACCGTCGTCATTGTCGAGGAATAATAGCGATGCTTCGCAATATGGTGGATCACAGCATAGTTCTTGTTATAGTCAAAGttattcctCGCTATCTGTTTCGCCTACACATTTTTCCCCAACACAATCACCAATACAGCCAAGGCACATACAAAGAAATTTCCATGAATATACTGTGGCAGAGGAAACCAATGGCTATGAAGAGAAATTGTCAATGTCTGACATTGGTCAACAACATGGTATAACATCAGGTATTTCAAGACAACAACTGataaatagtcCTTGTCCTATTTGTGGTGATAAAATTTCTGGTTTTCATTATGGCATATTTTCATGCGAAAGTTGCAAAGGATTTTTCAAGCGCACTGTACAAAATCACAAGAACTATGTGTGTCTACATGGTTCGACATGTTTGATCACAATAGCTACACGCAAGAAGTGTCCAGCTTGCCGCTTTGACAAGTGCTTGAACATGGGTATGAAATTAGAAGCAATCAGAGTTGATAGAACAAGAGGTGGGCGTAGCACCTATCCATTTACTTACACCATACCACCTTCCAATATGCAGCCACAGCATAGTGGACAGCACTCTGGAATGAACACTAATTCTGTAGAGAATAAAGTCAAGCAGGAAGAAGGAGCATGCAGAACCCCACCCCAAGAAACAGCCAGACTGATCCCTCAATTATTGCAAgaAATAATGGAAGTGGAACATTTATGGACTTATAACGAAGGATCATTTGAATCATCAAATGCTAGTGGAAGTTCTATGAATCATTGTGGTGGTGCCAAAGAATTAGCTAAGAGTCGCTTAATGGCTGAGAATTCAGGAACAGATTTTCTTTCCAATTTATGCAATATTGCTGATCATCGGCTATACAAAATAGTCAAGTGGTGTAAATCATTAcccttatttaaaaacatttcgATTGATGATCAGATATCACTATTAATAAATGCCTGGTGTGAGCTACTGTTATTCAGTTGTTGTTATCGATCAGTTAGCAGCCCTGGAGAAATACGTGTTAGTTTGGGCAAGTCTATTTCTTTAGATCAAGCAAGAGAATTAGGTTTAGCACCTTGTATTGAGCGCATGTTGAATTTCACTCAGCACCTAAGACGTTTGAGAGTAGATCGTTATGAATATGTAGCCATGAAAGTCATTGTACTATTATCatcagATACAAATGATCTGAAAGAACCAGAAAAAGTTCGTGCGTCTCAGGAAAAAGCATTACATGCTCTACAGCAGTATACTTTGACACATTATCCAGAGATGCCATCCAAATTTGGAGAATTATTGTTAAGAATACCTGATTTACAACGTACTTGTCAGgTTGGCAAAGAAATGTTATCAATTAAGAGTAAGGAAGGAGAAGGGCAAAGCTTCAATCTTTTAATGGAGTTATTAAGGGGTGatcattaa
- Protein Sequence
- MADSDTRMWGHSVQVSSGPVTVTSINLIAPRLQPNAQITTIKEEPHDKDSTMTEIKDDIIDEVGSECDREVSKIDFSGVTMRSKKMRAVEENMPRPMSWEGELSDSEMKQEEDRTVDVQTANQNYLLPRNENVNNQQTSPVKRIIYNDNNLVDRVMEHVKSKVTSSNNDIPLLVDKLLGGGYSPLLQHRTNGIKQTSHIPPTQSPDSAIHSCCSPAQSPITSRHNPPSSSGFSSPSTFTPSSLSRNNSDASQYGGSQHSSCYSQSYSSLSVSPTHFSPTQSPIQPRHIQRNFHEYTVAEETNGYEEKLSMSDIGQQHGITSGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNHKNYVCLHGSTCLITIATRKKCPACRFDKCLNMGMKLEAIRVDRTRGGRSTYPFTYTIPPSNMQPQHSGQHSGMNTNSVENKVKQEEGACRTPPQETARLIPQLLQEIMEVEHLWTYNEGSFESSNASGSSMNHCGGAKELAKSRLMAENSGTDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQISLLINAWCELLLFSCCYRSVSSPGEIRVSLGKSISLDQARELGLAPCIERMLNFTQHLRRLRVDRYEYVAMKVIVLLSSDTNDLKEPEKVRASQEKALHALQQYTLTHYPEMPSKFGELLLRIPDLQRTCQVGKEMLSIKSKEGEGQSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00340610;
- 90% Identity
- iTF_00941576;
- 80% Identity
- iTF_01304942;