Rnym000155.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- CSRNP3
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000001.1:977302-979974[+]
Transcription Factor Domain
- TF Family
- CSRNP_N
- Domain
- CSRNP_N domain
- PFAM
- PF16019
- TF Group
- Unclassified Structure
- Description
- This presumed domain is found at the N-terminus of cysteine/serine-rich nuclear proteins. These proteins act as transcriptional activators [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.3 7.7e+03 -3.0 0.6 78 108 136 166 117 184 0.56 2 2 8.6e-98 2.2e-93 312.7 5.4 1 218 361 568 361 568 0.92
Sequence Information
- Coding Sequence
- atggaatttttaataacaaatgaaTCTAATGAAGTGTCTATATTATCGCAAATTGATGAATCCACCAACACCTTACCTCATAATGATGAAATTAAGGATACAAATGTTGCAAAcattaataaagataataaagaaatatctACTGAATCAAAAACTTTATCTGACTGTCTAGTGGATGCCTCAAAATCATTATCAGATTCAGAATGTAGAgttcaaaatatgttatttgatATGAAATCTGAAGAATTGAGTATAAGTTCTGATGAAAAAACCACCATAGATTGCAATATAAAACCttacaataatgatataaagaatttatgtatgtttatgCCCTCATCAAATTCAACTTATATCTCTTCTAATGAAACTCAAGTTCTCTCAAGTACAAATGAATCAACTTATtcagatataaataatacttttactaCTAATAAAAAACGAGGATTTTCAATTGAAGAAATCAGTAAAGATGAAACTTCTCAAAATAGTCAAAGTATGTCAACatattcaaatgattataCTTGTTTTTTAAGCGAGCAAACAGATGCTACAAGCAATTTAACACCTTTCAAAAGAAGTAATAGCTATTATTTTGATTCTCCTGTAAAAAAGTTATGTATTAACAAACTACCTATTGATGATAAAACAAATGAAGCGCTTGATAGCATTAAcctatattcaaataaaaaagaaaataaaatattcagtgGATTTACTAGCATTCAGAATGACTTAGAAGTGGATTGTATACAAGATCGTTACGATGGAAGCGACTCTGGATTTGGATCAGAATTAGCAGAAGATAAGAACACTGGAAGCTTAGATGTAGCAGTTTCAACATCAAGTATATCATACAAAactgattttacattaaaccAAGAATCTAGTTTTGAAGATTTACAAAGAACTTCAAATGAATTTTTGTCAGCAATGGAAGTGTTGAAGCCAAAATTCTCTGATTCTATTCTAGATACAGGATCATTAGAtgttagaaataattatgGAAATGTTAAAGGCATTTTAAAACGCAACAAACCTATCAATTATGATATTCTAACATCTGATGTTACAACGGTGAAGAAacgcaaaaatataaattttgcaAATGTAACAGTCTTTTATTTTCCACGAGTTCAAGGATTTACATGCGTTCCATCTcagggtGGTTCTACTCTTGGCATGACAAGAGTTCATAGCGCATCACGAGTTTTTTCTCTGCCTGAATATATAGCGGAACAGAGAAGAATACGTCGAAACTTAATTCAAATAAGTCAATCCGAGGTTTCTGGTACAAATAGTGATGACAGTGATAGCGATGTAGGAGCAGCAGATGTTTACTCTGAATCTGACGCTGATGTAGATTCAGATAGCAATGGAAGTTTTTTACAAcctgTACCTACACGACAAAGACGTGCTTTATTGAAGGCAGCTGGTGTTGACAAAATTGATTCGTCAGAAAAGGATGACTGCAAGAGCATAAGACTATCGAGGGAATTTTGCGGGTGTTTATGCCGCGGTTTTTGTGACCCAGATACATGCGCATGTTTTCAAGCAGGCATAACATGTCAAGTTGACAGAATGAATTTCCCATGTGGATGCACAGTAGATGGCTGTGGAAATTCTGTTGGTCGTATAGAATTCAATCCAACAAGAGTTCGAAAACATTTCATTCACACCATAATGAGACTTGAAATCAAAAAGAGAGAAGCACAAGAAGAGGAGCACTGTAATAAGCTAGCTATGAATTCACCACTTATATCCAATTTTTCCTATCATGATTCCAGACACATACAACCGTATTATCAACCACAGCACTATGAgcacaatttaaatgattataattatcaatcgtTTTTGCCTGTTTATGATAGTAATAATCACATTGCTCCAGAAAGTAGTACTCAGAACAATTATCAGCTTAATAATTTGCAAACTTCATATGAACTGTATCAGCCATTCCCATCTGCATTTGTGCCTTTGTCACCAGATAGACCTAGAGGATTGTCTATTATAGACAATAAACCTGAAACGTTCACAGATTTATTACAACCATACACTTTACCGAGTATTGAAAGTACTGATTCACTAGGTATTCCAAATATTCCAAGTACATTAGTTTCAGATAGTTTCAATTTAGAAACTGAAAATTTAGGGGAAATCATTAAGAACACAATGGTTGAAAGTGTCAATTCTTAA
- Protein Sequence
- MEFLITNESNEVSILSQIDESTNTLPHNDEIKDTNVANINKDNKEISTESKTLSDCLVDASKSLSDSECRVQNMLFDMKSEELSISSDEKTTIDCNIKPYNNDIKNLCMFMPSSNSTYISSNETQVLSSTNESTYSDINNTFTTNKKRGFSIEEISKDETSQNSQSMSTYSNDYTCFLSEQTDATSNLTPFKRSNSYYFDSPVKKLCINKLPIDDKTNEALDSINLYSNKKENKIFSGFTSIQNDLEVDCIQDRYDGSDSGFGSELAEDKNTGSLDVAVSTSSISYKTDFTLNQESSFEDLQRTSNEFLSAMEVLKPKFSDSILDTGSLDVRNNYGNVKGILKRNKPINYDILTSDVTTVKKRKNINFANVTVFYFPRVQGFTCVPSQGGSTLGMTRVHSASRVFSLPEYIAEQRRIRRNLIQISQSEVSGTNSDDSDSDVGAADVYSESDADVDSDSNGSFLQPVPTRQRRALLKAAGVDKIDSSEKDDCKSIRLSREFCGCLCRGFCDPDTCACFQAGITCQVDRMNFPCGCTVDGCGNSVGRIEFNPTRVRKHFIHTIMRLEIKKREAQEEEHCNKLAMNSPLISNFSYHDSRHIQPYYQPQHYEHNLNDYNYQSFLPVYDSNNHIAPESSTQNNYQLNNLQTSYELYQPFPSAFVPLSPDRPRGLSIIDNKPETFTDLLQPYTLPSIESTDSLGIPNIPSTLVSDSFNLETENLGEIIKNTMVESVNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01031965;
- 90% Identity
- iTF_01304176;
- 80% Identity
- -