Rnym019303.2
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- Camta2
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000030.1:93733-116905[-]
Transcription Factor Domain
- TF Family
- CG-1
- Domain
- CG-1 domain
- PFAM
- PF03859
- TF Group
- Unclassified Structure
- Description
- CG-1 domains are highly conserved domains of about 130 amino-acid residues containing a predicted bipartite NLS and named after a partial cDNA clone isolated from parsley encoding a sequence-specific DNA-binding protein [2]. CG-1 domains are associated with CAMTA proteins (for CAlModulin -binding Transcription Activator) that are transcription factors containing a calmodulin -binding domain and ankyrins (ANK) motifs [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.2e-14 1.5e-10 41.3 0.1 77 116 7 45 2 45 0.92 2 3 1.1 1.4e+04 -3.8 0.0 25 44 535 554 523 567 0.76 3 3 0.068 8.7e+02 0.1 0.0 27 63 903 942 890 956 0.64
Sequence Information
- Coding Sequence
- ATGGGTATGAAAGATATGGGAACTGTGtgcATTTATGGGTGCTATGTACATTCAGCGATACTTCCGACATTTCACAGAAGATGTTATTGGTTACTACAAAATCCTGATATGGTATTGGTGCACTATTTGAATGTACCGTATCCGGACGACAACAAATTGTCGGTGATTTCGCCAAGCCTCGCGCTGTGGGCTGATCGTAAAGAGTGGACGAAAGACGAATTACTATCTCAGTTGAAACCCATGTtttacgAGGAAGACCCTGACCTTAGCAACGAAATGGAAGTATCGACGGCCGAGTGCGTAGCTGCTATGGTCACACAGCTGATGGAGTGGCAGAAGAATGCCAGGGCGACGCTACTTAGCCGAACGCTTGAATGCGGATGTCCGGACTCGACGTGTGCGGATGGACAATCGTGCTCGCGCCCGATCAGACGGATTTCGCCGTCGGATAGTAATCAGGTGTCATCGACGACTGGGAATCGATCGCGTCCCGGTACAATATTACTCACCAACCACCACGTTAATTCGTCCAGGACCACAATGAATACATTAATGATCGCTAATCACGCCAATCATAAGcaGGCACAAAGTGGGCCAACCTCATTGAACACTACAATGAACAACAACTTGTTGTCGAATTCCACAAGGGATTTTCGCAATCAACCACAACAGCAGCAACCGCAACAACAAATAATTCTCAAGCATGATTGCagagataataatcaaatattaagcAACAGACAACCACCAATCAACGTGACGGACAATAATCACATACCTActacaatgatttcatataaaCCACAAGGTTCAGACGAAGTGATTCACGTGTACACCGAAAAACAAACGTATCACACTCCACAAAATCAAGACGAGCACGCTGTACATCTGTTCCACGGACAAGATCAGCTAAAACAACAGTCGGACCACGTGAAATCGGAATTCTATGATGTCACGTTAGATTTGTCACACGACGATATACAGCAGACGCTTTCAGCCAACATGCCCGCTTCGTGTGGCAATGCTGATCAATTGTTACGgctGGATGATGaccatagtaataaaaatctagACGGTACCGGAGACGATGTATTTGTAAGTCTCGATGCGTTTGATATGCTTACTGACTTCCAAGAACTTGATATCCTAGAACATGCCACGCAACATGCTTCAAATCTAGTTACAGAAATAGGAACAAATGCAGCAGATATGCATCCACACGACCAAACGCAAATAGACAATATGGATATACTACAAATAACTGATTACTGTCCCGAATGGGCATTTCCAGAGGGAGGTGTTAAAGTATTAATCACAGGTCCTTGGTTTTCTTCCTCGTCGTACACTGTTATGTTTGATACGATCACAGTTCCGAGCACTTTGATTCAAGGAGGTGTTTTACGATGCTACTGTCcagCTCATGATATAGGCACCGTCACATTGCAAGTAGTCATTGATGGCAGGCCAGTATCAACCACCGCCATATTTGAATACCGTCAACACGAATTTCCGCTAACCATATCCTCATTATCTATGTCACATACGCCTTCTCTACTCAAATTTCATTTGCTACAAAAACTCGACTCCATTGAAGATTACTTACAGTCAAACAATCAACAAACAGACCAACcattgaagGATAGTATCATTATGTTTAGCAAACCCAATTTTGAAGATCAGCTTGTAAATTACTGTGAAAAAATGAAACAGTTCTCGTGGAAATCTGAATCTGAATACAACATTAAGCAATTAGAAACTGAAACCACTATTCTACATATGGCAGCATTTTTGGGATATTCTAAACTTGTGTGCATACTACTTCAATGgaaattagaaaatgtatCACTATTTTTGGAAATGGAAGTCAATGTTTCAAAGCAAGATCGTGAAGGATACACGCCTCTTATGTGGGCTTGTAAAAAAGGACACAAAGATACAGCGGTGTTACTATGTCAGTGGTATCAAACTGTTCAAAATTCGAATAACAACTTTAATCAAGATTACTCTCAACCCGATATATTAGAATCCGTTCATCAGTaTTTTAACGATTTCAATCAAAATCAGTATTGCAACAGTGACAATTTAAGTAACGATGTATTTTTAAGACCTGATGGAATCAATAGtgatattaAGAAAGAAATCAATCAAACAACCAACGAATCAAATAATCTAATAGCGCCGCCAAATAAATCGGTTACCGTGTTATGTGCAAAAGGAGAAACCAACAAATcggataaaaatgaaataaaaccaCAAGAAACTCAAGGTTCAAAAAGACCATTACCTAATAGTTTTTTCCAGGCAGATGACTATTATGATCAATTTTGCAAACCATCGCTCTACTTCCCATCTATTCAAAAATTTCAAAAGAGTTTGTTTCTTCCACTACAATCCCCTACATCGGATAGCGGAAATTCGTCGGAAAAATCACCAGTATTATCAAAgtctgattttattatttGCATGGTAACCGCGCTGGCCGATGGACCGGCGGACGGAGCCGTGGGTAGTGAGAACGATGGCAATGGTAACACGCGATCCGATGAACGTCAGAACGATGAACGAATCGAAGACGCTGTTCAAACACCCAAAGATCCCGCTGAACACGgGGAACATGATGTCCGTGTCTTAACATTAGCTGAACAATTCATAGCAGCTATGCCTGAACATATTAAGAATGAAAACGGAACACAcggtaaaattataacaatggaAGTACTTGACGATCCTCCGTCATCTGTGTCGTCGTGTTGTTTTGATACCAACTCAGAAATGAATACAGAATTCAACGAACACGTTTATCATTATCGGCAAAAAGATCGAGAAATAGAAACACCCACGTCCAGTACCAGTTTAACGTTAAGTCCGGTGTCGAGTGCATCACAATGTTCACCTGCTTCACCACCACCGACTGCTGCAGATCTATGTGAATTTCTCCATGCTTCATCAAATAACCAATTCTTTGAAAAGAATTTTTCAAACCTTACACTGTCCGATTATGAACAACGCGAGTTATATGAGGCAGCCAAAACTATTCAAAAGGCGTACAGGACGTATAAAAAAAGAGAAGAAGACAAAGAAATTTCAGCTGCTTCGATTATACAAAACTATTATCGCCGTTACAAACAGTATGCGTACTACAAGCAGATGACAAAAGCTGCGGTTCtaattcaaaataagtatCGTGTATACAGAAGACATAAGCGGTTTAAAAAAGAAGTTcctcattatattaataacacgtTCACTGTCATCAAaaaaaatcaaaatcaaaaacgcCAAAATCAAGCAGCTCgaaaaattcaacaatttatGAGACAGTCCAAGAATGGTACGTCTCCTCCTGTCACAATCAACGAACGAACTTTTGGATCTCGTAAGCGGGAAGCTAACGGCAATCACAATATGAAATATCCACCGACAAAAGTGGCACAATACTCGACACTCAACCACCATTGA
- Protein Sequence
- MGMKDMGTVCIYGCYVHSAILPTFHRRCYWLLQNPDMVLVHYLNVPYPDDNKLSVISPSLALWADRKEWTKDELLSQLKPMFYEEDPDLSNEMEVSTAECVAAMVTQLMEWQKNARATLLSRTLECGCPDSTCADGQSCSRPIRRISPSDSNQVSSTTGNRSRPGTILLTNHHVNSSRTTMNTLMIANHANHKQAQSGPTSLNTTMNNNLLSNSTRDFRNQPQQQQPQQQIILKHDCRDNNQILSNRQPPINVTDNNHIPTTMISYKPQGSDEVIHVYTEKQTYHTPQNQDEHAVHLFHGQDQLKQQSDHVKSEFYDVTLDLSHDDIQQTLSANMPASCGNADQLLRLDDDHSNKNLDGTGDDVFVSLDAFDMLTDFQELDILEHATQHASNLVTEIGTNAADMHPHDQTQIDNMDILQITDYCPEWAFPEGGVKVLITGPWFSSSSYTVMFDTITVPSTLIQGGVLRCYCPAHDIGTVTLQVVIDGRPVSTTAIFEYRQHEFPLTISSLSMSHTPSLLKFHLLQKLDSIEDYLQSNNQQTDQPLKDSIIMFSKPNFEDQLVNYCEKMKQFSWKSESEYNIKQLETETTILHMAAFLGYSKLVCILLQWKLENVSLFLEMEVNVSKQDREGYTPLMWACKKGHKDTAVLLCQWYQTVQNSNNNFNQDYSQPDILESVHQYFNDFNQNQYCNSDNLSNDVFLRPDGINSDIKKEINQTTNESNNLIAPPNKSVTVLCAKGETNKSDKNEIKPQETQGSKRPLPNSFFQADDYYDQFCKPSLYFPSIQKFQKSLFLPLQSPTSDSGNSSEKSPVLSKSDFIICMVTALADGPADGAVGSENDGNGNTRSDERQNDERIEDAVQTPKDPAEHGEHDVRVLTLAEQFIAAMPEHIKNENGTHGKIITMEVLDDPPSSVSSCCFDTNSEMNTEFNEHVYHYRQKDREIETPTSSTSLTLSPVSSASQCSPASPPPTAADLCEFLHASSNNQFFEKNFSNLTLSDYEQRELYEAAKTIQKAYRTYKKREEDKEISAASIIQNYYRRYKQYAYYKQMTKAAVLIQNKYRVYRRHKRFKKEVPHYINNTFTVIKKNQNQKRQNQAARKIQQFMRQSKNGTSPPVTINERTFGSRKREANGNHNMKYPPTKVAQYSTLNHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01167601;
- 90% Identity
- iTF_00940487;
- 80% Identity
- -