Rnym002651.2
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- SMARCC2
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000005.1:6596551-6604574[-]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.8e-15 9.3e-12 45.4 0.2 3 44 598 639 596 641 0.95
Sequence Information
- Coding Sequence
- ATGTTGGCCTTGGGTCCGAAAAAGGACGGCAGTCCGAAtgtgaaattttttgaatctCCCGAAACGCTGAACATGTTGGAGGGCGTAAGGACGTGGCTAatgaaaaatcacaaaaagTACCTTCAAGCAGATCCACCAACCAACAAGACTCTTGCAGCCCTGGTATTGCAGCTCATTCAATTTCAAGAAGACAATCTTGGCAAAAATGTTAGCAAACCACCACTCACTCGCTTGCCTATGCGCTGTTTTATGGATTTCAAACCTGGAGGTGCATTGTGCCATTTGCTAGCTACCGTGTACAAGTTTAAAGTGGAACAGGGGTGGCGAAGATTCGATTTCCAGGTCAGTAAGAGTCCTTCTAGAATGGACAGAAGTattgaaatgtttatgaaCGTTGAAAAGGCTTTAATTCATGCCAAATGTCTATCTATGCCAGTTATACTTATTCATCCAGATGTTGataaaatagttcaaaatcGCATAAAGGATATTATCAAAAGACATCAAGGAACACTTACTgaaaACGAACAAGAAGCTACCCATATCTTATTTCCGGTTGTGGATCCATTGGATGAAGAATATGCTCGCcctgtatacaaaaataaagaacGTTGGATACAAATGCATTGGTATTATTTCCCTGATTCTCATGATTCATGGGTGACTACTGAATTGCCAGTCGAACCTCCTGAAGTATTATATGGCAACCAACACCCAACTCCATGGAGggtcACAGCGTCTTGGGTCTTAGATTTAGATACTTATAATGAGTGGATGAATGAAGAAGATTATGAAGTTGATGAAACtggcaaaaaaaaagttcataaattacgtCTCTCAGTTGAAGATTTCATGAGTAATGACCCATCTGGAGGTAAGAAAAAGCCTAAACGAAAACGAACGCCATCACCACCCTCAAAACCAAATAAACGTAaaagtgGACGTGGAGGTTCTGTGATGAgtgtaaagaaaaataaagttgATGATGACAGTGATGATCTAACTAGAGATCTTGAAGACCCGATTTCAGAACCCAATATATCtgaagttaatttaaatatttctcaaaTAAAAACTGgaTCATCTTCATCGAAGAAGGATAGTGATTCACAGCCAATTAGAAGTGGTACTCTTATGGATTTAGATGAAGATTTGGATAAAAgtgaagataataaaaactatgataataaCGCCCAAGATGaaGAAGGGCCAGAAGATAATGCTACTGAACAAATGCATCATATTGTTATACCAAGCTATGCTGCATGGtttgattataattcaattcatACGGTTGAGAAACGTGCCTTACCAGAGTTTTTCAATaACAAGAATAAATCGAAAACCCCTGAAATATACTTAGCATATCGAAATTTCATGATTGATACATATAGGCTTAATCCAACTGAATATATGACAAGTACTGCTGCTAGGCGTAATTTGGCTGGTGATGTTTGTGCAATTATGAGAGTTCATGCTTTTTTGGAACAATGGGGTCTTATTAACTatcaagttGATGCTGATAGTAGACCAACTGCAATGGGTCCACCACCTACATCTCATTTTCATATCTTATCTGATACACCCTCTGGTTTGCAACCTGTTAATCCTCCTAGAACCCAACAACCTTCAGCTGCTAAAACACTTTTAGATTTAGAGAAAAAGCCTGTAACAACAGATAAAGATACTGGTCATCACCCAGAACCATTATCTAGTTTTGGACTTAAATTAGATCAgtatgcTAAAAAACCTGGTTTATTACGAAATAAGACAGCTGCTGGAATGACAAGAGATTGGACTGAACAAGAAACTTTATTACTTCTCGAAGGATTAGAAATGTATAAAGATGATTGGAACAAAGTTTGTGAACATGTTGGCACAAGAACTCAAGATGAATGTATATTACACTTTCTTCGTTTACCTATAGAAGATCCCTACTTAGAAGATTTTGAAACTGgtgGTGCTTTGGGTCCTTTATCTTATCAACCTATTCCATTTAGTAAATCTGGTAATCCAATTATGTCTACTGTTGCTTTTTTGGCATCTGTAGTAGACCCCAGAGTTGCTGCTGCAGCAGCTAAAGCCGCTATGGAAGAATTTGCTGCAATTCGAgATGAAGTTCCTTCTGCATTGATGGATGCTCATGTTAAAAACATTGAAGCAGCCACTACAGATGGAAAGTATGATCCAGCTGTTGGACTTTTACagAGTGGTATTGCGGGAACTTTCCCAgaaaaagaagaagaaaatgaaaaagaaaaaaaagaaccaGAGGATATCAAAGATCCATCATTGACAACAGAAAATGATAAATCCGTAAGAGCTGATAAAGAAGTAGTCTCTGACAAAGATAAAGAACAACCTATGGATGTTGACAAGAAACCTTGTGAAGAAACTACAGCCAGTACACAGTCTACTACTGTTAATCGTACTACCGAAGAAGAACCTGAACGAATAGTTAAAgaCTCTGAAGTACaagctgctgctgctgcagcTTTAGCCGCAGCTGCTGTCAAAGCAAAACATTTAGCAGCTGTAGAagaacgaaaaataaaatcacttgTTGCATTACTAGTAGAAACACAAATGAAAAAACTAGAGATAAAGTTAAGACATTTTGAAGAATTAGAAACAACTATGGAAAGAGAACGTGAAGGGTTAGAATACCAAAGGCAGCAGTTGATACAAGAGCGACAACAATTCCATTTAGAACAGCTAAAAGCTGCTGAATTCAGAGCTCGCCAACAGGCTCATCATAGATTACAAGCTGCAGGTGTTCCTCCTCCAGTCTCAAACCCTGAACATGTTGCTCCTGCATCACCTGCACCTCCAATGGCCACATAA
- Protein Sequence
- MLALGPKKDGSPNVKFFESPETLNMLEGVRTWLMKNHKKYLQADPPTNKTLAALVLQLIQFQEDNLGKNVSKPPLTRLPMRCFMDFKPGGALCHLLATVYKFKVEQGWRRFDFQVSKSPSRMDRSIEMFMNVEKALIHAKCLSMPVILIHPDVDKIVQNRIKDIIKRHQGTLTENEQEATHILFPVVDPLDEEYARPVYKNKERWIQMHWYYFPDSHDSWVTTELPVEPPEVLYGNQHPTPWRVTASWVLDLDTYNEWMNEEDYEVDETGKKKVHKLRLSVEDFMSNDPSGGKKKPKRKRTPSPPSKPNKRKSGRGGSVMSVKKNKVDDDSDDLTRDLEDPISEPNISEVNLNISQIKTGSSSSKKDSDSQPIRSGTLMDLDEDLDKSEDNKNYDNNAQDEEGPEDNATEQMHHIVIPSYAAWFDYNSIHTVEKRALPEFFNNKNKSKTPEIYLAYRNFMIDTYRLNPTEYMTSTAARRNLAGDVCAIMRVHAFLEQWGLINYQVDADSRPTAMGPPPTSHFHILSDTPSGLQPVNPPRTQQPSAAKTLLDLEKKPVTTDKDTGHHPEPLSSFGLKLDQYAKKPGLLRNKTAAGMTRDWTEQETLLLLEGLEMYKDDWNKVCEHVGTRTQDECILHFLRLPIEDPYLEDFETGGALGPLSYQPIPFSKSGNPIMSTVAFLASVVDPRVAAAAAKAAMEEFAAIRDEVPSALMDAHVKNIEAATTDGKYDPAVGLLQSGIAGTFPEKEEENEKEKKEPEDIKDPSLTTENDKSVRADKEVVSDKDKEQPMDVDKKPCEETTASTQSTTVNRTTEEEPERIVKDSEVQAAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLIQERQQFHLEQLKAAEFRARQQAHHRLQAAGVPPPVSNPEHVAPASPAPPMAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00811911;
- 90% Identity
- iTF_00135253;
- 80% Identity
- -