Rnym007948.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- dnajc2
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000010.1:1205785-1208427[-]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.8e-05 0.1 13.2 0.0 3 35 424 460 422 472 0.81 2 2 4.3e-13 4.5e-10 40.0 0.2 4 43 519 562 518 565 0.92
Sequence Information
- Coding Sequence
- atgaaagaCAAAGAGAAAccatcaatattaaatgttcaacACCGTACAGTTGAAACAGTCGGACCATGGATATTGAGATATTTATCAGGCTCAACTGTTCAAGATAAATGTTTAACTAATGGTGAAGAAGTAGAAGATACAAATGAATCATTTATCGATGAAGAAAGTCAAGCGGAtacaatttatctaaaaactttAGATCCTAAGGAATGGAAAGATCAAGATCATTATCaAGTTTTAGGACTATCAAAATTGCGATATAAAGCCACTGAAGCACAAATCAAAAGTGCTTATAGGCGTAGAGTTCTTAATCATCATCcagataaaagaaaaaagcTTGGAGAAAAAGTTCAAGGAGATGATGATTATTTTACATGCATTACTAAAGCCTGGGAAACTCTTGGGAATAAAACTAAAAGACGTGCATATGATTCAATTGATCCTAAATTTGACAATAGTATTCCTTCTAAGGAAACAGCAAAAAAATCTgacttttttgaattatttgggCCGGTATTTGTTCGTAATAGTATGTGGTCAGAACAAAGTTCTGTACCACTTTTAGGAGATATAAATAGTAGCCGTGATCATGTTGATCGTTTCTACAATTTTTGGTATGGTTTCAATTCATGGAGAGAATTTTCATATCTTGATGAAGAAGATCGAGAACAAGCCTCAGATCGTGAAGAACGAAGATggattgaaaaacaaaatcgtGCAAATCGTAATAAGCTAAAAAAAGAAGAGAGTACTCGTATTAGGCAATTAGTTGACTTAGCATATGCTAATGATCCaagacttttaaaatttaaaaaggagGAACAAGAACGTAAAGCAGCTGTGAAACAAGCCAAAAAAGACGCAATAAGACAAAAACAAGAAGAAGAAATTAGGTTAAGAGAAGAAGAAGAAGCTAAAgtacaaaaagaaaaagaagaacGCGAGGCTGCAGAAAAAGCACAACGAAATGCTCTTAAAGCAGAAAAAGATAGTCAAAAGAAAGCTTTGAAAAAGGAACGTAAACATATAAGGGATTTatgcaaaacaaataattactatatacaaAATGGTGACaatgttattgaaataatgtctGGTGTTGAAAAAATTTGTGATCAACTTTCTGCCATACAGCTTAAACAATTGGCCCGTGCTCTTCAAATAGAAGGTCGTAAAGCATTAATAGAAAAACTTAAACAAATGGAATGTAgagttgaaatgaataatgttattaaaaatgataccaaaattgttgaaaaaaataataatgattgggAAACAGATGATGttcaattattgataaaagcGGTCAATTTGTTTCCAGCTGGTACAAACCAACGTTGGGAAGCTGTtgcaaattttattaatcaacaTAGTAAGAATGGTGAACGAAATGCCAAACAAGTATTAGCAAAAGCTAAATCTCTTCAAAGTACTAACTACACTGATAATGCTTTAAAATCTGAAATGAATGCCAATGCATATGATCaatttgaaaaagaaaaaaaatgtgaatcaCAAGTACCTGAAGTAGTTTCAGAACGTCCAATTGGATGGTCAGCAGATGAGCAAAAATTATTGGAACAAGCTCTTAAAACGTATCCAAATGCAGTAAAAGAACGTTGGGATAGAATAGCAGAATGTGTTCCAACAAGAACGAAAAAGGAATGTATGAAAAGATATAAAGAAATTGTTGAAATAGTTAAAGCCAAAAAAGCTGCTCAAGtgtaa
- Protein Sequence
- MKDKEKPSILNVQHRTVETVGPWILRYLSGSTVQDKCLTNGEEVEDTNESFIDEESQADTIYLKTLDPKEWKDQDHYQVLGLSKLRYKATEAQIKSAYRRRVLNHHPDKRKKLGEKVQGDDDYFTCITKAWETLGNKTKRRAYDSIDPKFDNSIPSKETAKKSDFFELFGPVFVRNSMWSEQSSVPLLGDINSSRDHVDRFYNFWYGFNSWREFSYLDEEDREQASDREERRWIEKQNRANRNKLKKEESTRIRQLVDLAYANDPRLLKFKKEEQERKAAVKQAKKDAIRQKQEEEIRLREEEEAKVQKEKEEREAAEKAQRNALKAEKDSQKKALKKERKHIRDLCKTNNYYIQNGDNVIEIMSGVEKICDQLSAIQLKQLARALQIEGRKALIEKLKQMECRVEMNNVIKNDTKIVEKNNNDWETDDVQLLIKAVNLFPAGTNQRWEAVANFINQHSKNGERNAKQVLAKAKSLQSTNYTDNALKSEMNANAYDQFEKEKKCESQVPEVVSERPIGWSADEQKLLEQALKTYPNAVKERWDRIAECVPTRTKKECMKRYKEIVEIVKAKKAAQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01167538;
- 90% Identity
- iTF_00136067;
- 80% Identity
- -