Rnym005232.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- bab2
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000006.1:39740606-39742757[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2e-13 5.7e-10 39.2 0.0 4 45 385 426 382 426 0.92 2 2 8.5 1.5e+04 -3.8 0.2 12 18 451 458 450 458 0.82
Sequence Information
- Coding Sequence
- ATGACTAACAACCATTTAAACACGATTTCTGGACAAGACCAACAGTACTGTTTGAGATGGAATAATCATCAAACAAATCTAACTAATGtatttgtacaattatttcaatCTGAAGAATTTACTGATACTACACTGTTTTGTGAGGGTGGTCCACCTGTTAAATGTCACAAAATGGTATTAGCTGCGTGTTCATCATACTTTCAGTCAGTATTTGCTGAAGTACCTGGTAAACACTCTGCAGTTGTGCTAAAAGACGTTGGCCATTCTGAAATGAAAGCCATACTTGACTATATGTATAAAGGTGAAGTAAATATTGCTCATGATCAATTAGCTGCTTTGCTAAAGGTTGCTGAAATGCTAAAAGTTAAAGGACTCGTCCAAGACAATACATATCAACCACAGAGTGCAACCCCAACTGTTGACGAAGACCGTAACATAATAAGCACTTCGTCTCCAAATCATGTATCACCAGATGGAAATACGAGTGCATCCAAAGATCTCGCCatcaatattaacaataataatgagcaTAATGATTCACCCCCGCATAGTACTGGTATTACTCACCAATCGCCATTCTACAACAAAAACTATTATGGAAAATCACCGCCATTAACTGACCACAGACCGGGAAGAAGTAACGTTCCGATGTGGCCAATGCCTGCCATGCAGATGTCTTCAACACCCGTGACAAATGCAATGTTTGGTGGTAGTTACGATGCTATGATTGCTGGACATCCGGGAATGTCACCGTTGCGtcgtaaaaaattatctagCATGTTGATGGGCCGAGATACACCTATATTAAGAACTGTACTTGGTCAGGGACAAGCTGATTCTTCACAACAACTAGCtccaatattatatggttCTGAAGCAATGGAACATCATAGACCTCAGTCTAATGGATCTGAACATAGCAGCCAATTTTCAAAGATTAAAATAGAAGGATCAGAACCTCATTCTCCATATCCTCCTGATATGTCAATGAATGATGATGAAGAAATTATAaggatgggaaaaatgaataattcatCCTCACCTCAATCAATGTATGGCGAttcaaaaaGTGGTATTGTAACTCCAGGTATTGCAACTTATGTTCCATCTCATAAGCCTGAGTGGAAAAGATACAAACAATATACACGACAAGATATTATGTCAGCAATAGATGCTGTTCGAACTGGCATGAGTGCATTACAAGCTTCTCGAAAATTTGGAGTTCCGTCTCGTACCCTCTATGATAAAGTGAAGAAACTTGGTATAACCACAAGCCGTCCATTTCGCAGATCAGGAGTCAACAATGGCAATCTTGGCTTTGCATATGGATTAGGTCCAGGTACTAGCAGTGTTATGTTCTCAGGACAAATGTCTGGAGCTGAAGATGAATCAGGCCATTCTACAGCCATGGAACATGCAACTGCTGGTTTCTTACATCATGCTCTTGGATTATCTGGAGTGCCTATAAAATCAGATCATGAAACTTCTAACAATGGGCATTCTCCTCGTTCAGACAGGATGGATGATGGAGGCTCACCATGTAGCCCAGAACTGATTAAATATGCTGGACACAGAGAAGACACACGATCACCAACTCCGACTGACAACGATGACCAAGCGCAAGATTTATCAGTGTCTCGTAAATCTGAGTCATCAATGCAATCGACACCTACATCTAGAGTTATTATGGCGCCTATTAGTCAAACGCCTTCTGTACCCATGTTAGCCGCTGGTAACGACGATAGGGACTGA
- Protein Sequence
- MTNNHLNTISGQDQQYCLRWNNHQTNLTNVFVQLFQSEEFTDTTLFCEGGPPVKCHKMVLAACSSYFQSVFAEVPGKHSAVVLKDVGHSEMKAILDYMYKGEVNIAHDQLAALLKVAEMLKVKGLVQDNTYQPQSATPTVDEDRNIISTSSPNHVSPDGNTSASKDLAININNNNEHNDSPPHSTGITHQSPFYNKNYYGKSPPLTDHRPGRSNVPMWPMPAMQMSSTPVTNAMFGGSYDAMIAGHPGMSPLRRKKLSSMLMGRDTPILRTVLGQGQADSSQQLAPILYGSEAMEHHRPQSNGSEHSSQFSKIKIEGSEPHSPYPPDMSMNDDEEIIRMGKMNNSSSPQSMYGDSKSGIVTPGIATYVPSHKPEWKRYKQYTRQDIMSAIDAVRTGMSALQASRKFGVPSRTLYDKVKKLGITTSRPFRRSGVNNGNLGFAYGLGPGTSSVMFSGQMSGAEDESGHSTAMEHATAGFLHHALGLSGVPIKSDHETSNNGHSPRSDRMDDGGSPCSPELIKYAGHREDTRSPTPTDNDDQAQDLSVSRKSESSMQSTPTSRVIMAPISQTPSVPMLAAGNDDRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00418207;
- 90% Identity
- iTF_00670378;
- 80% Identity
- iTF_01304982;