Rnym015188.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- bab2
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000018.1:2523610-2528134[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1e-11 1.9e-08 34.4 0.0 2 38 431 468 430 473 0.89 2 4 8.9e-12 1.6e-08 34.6 0.1 2 39 485 522 484 525 0.94 3 4 1.5e-16 2.7e-13 49.9 0.0 3 45 541 584 539 584 0.97 4 4 4.4e-17 7.9e-14 51.6 0.1 1 43 591 634 591 636 0.96
Sequence Information
- Coding Sequence
- ATGACAGTTAATGGCCAGCACTACTGTCTGCGATGGAACAATTACCAATCAAATATGACCTCTGTGTTTCACCAGCTTCTTCGAAATGAATCGTTTGTTGATGTTACTCTTGCTTGCAATGAGAGCACACTCAAAGCACATAaaGTGGTCTTATCAGCTTGTTCATCTTACttccaaaaattattgatgGATAACCCATGTAAACATCCAACCATTATATTACCTTATGATGTTTGTTTTAACGATCTCAAGTTCATTATAGAGTTTGTATATAGGGGCGAAATTGATGTATCTCAAGCTGAATTGcaaTCTCTTCTGAAGACAGCAGATCAGTTAAAGATTAAAGGATTATGTGAAGTGCCTGAAGATGAACGTGATACATCTATTGTGGCCGAAGTAACTCCTTTGGGGCCATTAAAAAGTGGTGGAAGAGTGTTCACAAAATTACAACGCAGAACTTCTccctattcaaaaaaattgagcCCCAATCAAATTCAGCAGGATCAGTTTAATCGAAATTATTATCGAATTGAACAATCAGGTTTTACACCTATTAATATTGATCAAGAAAACAAatctttaaatacTATCCATTGCATGACTGTAGCGACATCAACTGAAGATGATGAGAAAGAAATAAAGTCAACACTAACAGATTTACCGGTGGTCATACTAGAACCACATCcttcattaaatttacaagCCCAACAACAACCTCAGATAGTACACATACCAATACCACCATcacaacagcagcagcaacaacaacaacaacaactgaGTCATGTAACACAACATACAAATCAACCACAGTTGCAACAAGCATCAGTTCAAACTCATTcacaaATGATTATTACAACAGGTCCAGTTATGACAGTGAATGAAGCTGATATTTCGCCTGATATACAGCCTGTTGGGCCAAGGGCAACACCAGTACCAGTTAAAAATAACACTAGTCCCTCATCAACACCTACACATAGAGATATGGCTGttggTACATCATGTTCAAATGATATGATGAGAAGTGATGGAAGTGAGAGAAAATTTGAAAGTGCTAAATTTGAAACACTTCGTACTATTGATCAGTCATCAGATGCTATTGGAATAGAAAGACAACATTCTAATGatcgtAATATAAATGATGAAGACAATTCAATGCATACAATGATGATAACACCCGAACTTTTGGGATTATTACCAAATTCTTCTAATGCAGGAGatGTCAGTGAAGATAGTTCTAGTAACAATGTTAACAAACAGTATGGTACAAATGGTGGAAAAGGATGGACAGCTGATGACATGGAAAACGCCTTAGAAGCATTACGTTCACATAATATGTCTTTAACTAAAGCATCCATAACATTTGGAATTCCTTCTACAACATTATGGCAGCGGGCTCATCGAGCTGGTATAGATACTCCTAAAAAAGATGGTCCTGCTAAATCTTGGAATGATGAAGCTTTAAACATTGCATTAGATGCTCTGCGCACTGGCACTATTTCAGCAAATAAAGCTAGTAAAGCATATGGTATACCTAGTAGTACATTATATAAGATTGCGCGGCGGGAAGGAATTAGATTAGCTGCTCCATTCAATGCAGCACCAACTTCTTGGGGTCAGGAACAATTAGACCAAGCATTGCATGCCATACGAACTGGGCAAACAACTGTACAACGAGCTGCAGCCGACTATGGTATACCTTCTGGAACACTATATGGCCGGTGTAAACGTGAAAAAATTGAGTTGTCCCGCAGCAATCCAACTCCATGGTCTGAGGATGCTATGATGGAAGCTCTGGAGTCTGTACGATTAGGTCATATGAGTATTAATCAAGCagctatacattataatctaCCATATTCTTCGTTATATGGACGTTTCAAAAGGGTGAAATATGGAGCTGGACATCCAGATGATGATTGTGATGATATGATTGATTCAGATACGCAAAGTGAACAACAGCACattcaacaacaacaacaacagcagcagcagcaggcAAATCAGCAAGTACAGGCTACTCCAGTGTCCCAAATAATGTTGGTTCAATATCCAGCTCCACAAATTCAAATGTACCAACAACATCCAACTCATTCAACCACTAGTTGA
- Protein Sequence
- MTVNGQHYCLRWNNYQSNMTSVFHQLLRNESFVDVTLACNESTLKAHKVVLSACSSYFQKLLMDNPCKHPTIILPYDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPEDERDTSIVAEVTPLGPLKSGGRVFTKLQRRTSPYSKKLSPNQIQQDQFNRNYYRIEQSGFTPINIDQENKSLNTIHCMTVATSTEDDEKEIKSTLTDLPVVILEPHPSLNLQAQQQPQIVHIPIPPSQQQQQQQQQQLSHVTQHTNQPQLQQASVQTHSQMIITTGPVMTVNEADISPDIQPVGPRATPVPVKNNTSPSSTPTHRDMAVGTSCSNDMMRSDGSERKFESAKFETLRTIDQSSDAIGIERQHSNDRNINDEDNSMHTMMITPELLGLLPNSSNAGDVSEDSSSNNVNKQYGTNGGKGWTADDMENALEALRSHNMSLTKASITFGIPSTTLWQRAHRAGIDTPKKDGPAKSWNDEALNIALDALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWGQEQLDQALHAIRTGQTTVQRAAADYGIPSGTLYGRCKREKIELSRSNPTPWSEDAMMEALESVRLGHMSINQAAIHYNLPYSSLYGRFKRVKYGAGHPDDDCDDMIDSDTQSEQQHIQQQQQQQQQQANQQVQATPVSQIMLVQYPAPQIQMYQQHPTHSTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00184731;
- 90% Identity
- iTF_01330472;
- 80% Identity
- iTF_01304980;