Rnym020917.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- ct
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000037.1:352808-383634[-]
Transcription Factor Domain
- TF Family
- CUT
- Domain
- Homeobox|CUT
- PFAM
- PF02376
- TF Group
- Helix-turn-helix
- Description
- The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.5e-27 3.1e-23 82.0 0.0 3 72 408 478 406 483 0.95 2 3 2.9e-31 3.7e-27 94.6 0.1 3 77 798 873 796 875 0.96 3 3 1.9e-31 2.5e-27 95.2 0.1 3 76 1045 1119 1043 1122 0.96
Sequence Information
- Coding Sequence
- ATGGATGTCCAGGCTATGCAGTCTATGGATTGGCTTTTTAAAAAGGAACGTATCTATCTACTGGCTCAATTTTGGCAACagAGAGCTACTTTGGCGGAAAAAGAAGTGACTACCCTAAAGGAACAGTTGACCAACAATAAAGCACAAGACACGAACGTCATGACCATGGCCACGCCTCTAAGCAATCATGTCGAATCCACCGAGGATCAAAATAAGACACCTGCTGAACTAGAACTTTCGGCCAAAGAAAAAGagatttcacAATTGGTGGAGGATGTACGCAGACTACAATCTAGTATCGGTAAACTACAAGATCATACAGCGAAAGAGATCGCCAGACTTGAAGAAGAGTTACATGACAAAAGACAACACATTATGAGACTTGAAGCCAGATTGGATGCTCAGAGAGACTACGAAGAAGTTAAACGACAGCTATGtgtACTGAAGGCCGTTGAATGTTCAGACGACCGTAATAACAAGTCACCAAACAACAACAAATCTGAAAATACACAAGGCACATCACCTCAACAACAGAGGTCGTCTTGCAGTCCCGTGCCTGAAATTCAAAATGATTTTTCAGTTCCGGTGGCCCCACCCCCTCCCGGGCTACAAAACGTCGAACAGTTTGGCCCGATACTCGGCGAAGAGATCGTGGCCAACTGGCGAAGATCCCTCGAATGCAATAAATATGAGCAAAAGAAAGTCTATACTTCTCCAAACCGACATGAAACTACCGataaggAAAAGTCACCTGGTCTAGAATCTATCAAAACACCACCTCCGAGCACATCTCCAGCACCTACTTCACCATCTATCATGGCTCAACCTGCGCGATCTGCTAGTAGGTCCGGAACACCATGTAAATCGCCCACAAGTGAATCAAACAGTTCACCACGACTTAACAATAGTTCtccacataataataacaataacccATCTCAGttgaacaacaacaacaacaataataacaatatcccCGCAGGCCTCATAAATGGTCTCTGTGGTCTTAATGTTGGTCtcaacaataacattttaggACCTGCTGGTGCTTTAGGCTTTGACTTGATAAAGTCGCCTTTTGATCACAGGTCTCCTTATCGATTTGGAGATGGTGATTGTACAATGGTTGGGCGTTTCGGTGAATCACTTATACCGAAAGGTGATCCAATGGAAGCTAGACTCCAAGAAATGCTTAGgtataatatggaCAAATATTCTACCCAAAACTTGGATACATTGCATATAGCTCGTCGCGTGCGTGAACTACTATCCATCCATAACGTGGGCCAAAGGTTATTTGCCAAATATATTCTCGGACTTTCCCAAGGGACCGTCAGTGAATTGCTGTCAAAACCTAAGCCGTGGGACAAGCTGACCGAAAAGGGACGTGATAGCTATAGGAAAATGCATGCGTGGGCATGTGACGAGAACGCGGTTATGCTACTCAAGTCGTTGATACCGAAAAAAGGTAAAGACTCTGGCATACCTACGGTAATGGGAAGAACTGAAAATGACGTCACCGATGAGAGGATTGTACACATATTAAATGAAGCGAGTCAAATGATGAAACCTAATCAACAGCAAGACGATACTCAAAGCAATGATGAAAGCACTTCACCAAatcaattaattagGAGTACTTCTCCGTCCAGACAAAGACCTAAAGAAGATATACCACAAGAACAAGTGGCCCGGCTGTATCAAGAAGAGCTATCCAAAATCATGGGCAAACGTTTGGAAGATTCTATGAGAAGCGGCGAACAGCCATTTGCAGGctgGCTCTTTCCTCATTTCTTCGGAAATCATACCGGCAACCACGATGATATTCGAACTGCATTAGATGCTTATCACCGAGAATTATCAAAGTTACAAAACTGCCCACAGAGCCAATTGTCAGGATTATTAGCTCTTCAACAACAAGCTGCCGTTGCAGCAATGtcaaacaacaacaataataacaataataataccatacaAGGAACCGGTATGGCTCAAGACTTGTCTTTACCAAAAGACAGAAAAGATATTTACCCGTTTGTACAACGAAAAGATTTTGCTGTTAAAGTAAATGGAACTGAGGTTTCAGACAAAGAGTCTGAAACTGTAGCAGAAGCAATGAAACAAGCCGGAAGTGCTTTTTCGCTTGTACGACCTAAAACTGAACAAAGTGGTACATCTTCTGTAGGAAGTTCAGCCAGTTCAccattaggtaataatattttacctccAGAGGATTTCGGTCAATCGGCTGCAGTCAGTCCACTCCAAAGAATGGCTTCAATTACAAATGCTTTAATTTCTCAACCCGCTACTCCACATCATCATTCTCCTTCCCAGAGACCTCTGAAAGCTGTATTGCCACCAATTACTCAACAACAATTTGACcaatttaacaatttgaaTACTGAAGAAATTGTGAGGAAAGTCAAAGAGCAACTTAGTCAATTTTCAATCAGTCAGAGATTATTTGGAGAATCTGTATTGGGTCTTTCACAAGGAAGTGTGTCCGATCTCTTGGCTAGACCAAAACCATGGCATATGTTGACTCAAAAAGGAAGAGAACCTTTTATTAGAATGAAAATGTTCTTGGAGGATGATAAAGCTGTACATAAACTAGTTGCTTCCCAATATAAAATTGCACCAGAGAAGCTTATGCGAACTGGAGGATATGGTGGATCAAGtcctATGAATCAGAATTTAGTAAAGTCAACACATACTTTTGGTGGTAAAATGACTCCTTCGCCTCTCGATCTCTTAAAAGTTAGTGGAGATGTGGATCGTCAAACACCACATCATCATATACTCACCTCAATGTGCAACACGTCTACAACAATGTCAGAAGATTCTGATATGGCGTCTTCACTGCAATCACCGAGCAACCATCATATTCAACTTCAGTCTCCGGGTGGACATCACCACGCAACTTCGTCTACTGCTTCTTCATTAATATCTACGGGTAGTCAACTTGCATCTATGATAGTCActgaaaataaacttaaagcAAGTCCGATACCAAATAACGGGATTCCGCAAAATCTTATGTTGCAACACGTGGCTGCAGCTTTCCAAAATACGGGTACACGTCACCCACCAGCAGTTGTACCATCAGTTTATGAGATGGCTGCTCTAACGCAAGATCTTGACACACAGACAATTACTACTAAAATCAAAGAAGCACTCCTCGCTAATAATATTGgacaaaaaattttcggTGAAGCTGTACTAGGGCTCTCTCAGGGATCAGTTAGTGAATTACTATCAAAGCCTAAGCCATGGCATATGCTCAGCATTAAAGGCCGTGAACCATTCATTCGGATGCAACTTTGGCTATCTGATCAACATAATGTGGAAAGATTGCAAGCGATTAAAAGTGAACGTAGGGAATTGAATAAAAGAAGACGAGGATCTGGCCAACAAGACAATGGAAGTGATACATCTTCGAATGACACTTCAGATTTTTATCACAGTGGCACTAGTAGTCCTCCATCTGCCGCAAAAAAACAACGAGTTCTGTTTTCCGATGAACAGAAAGAAGCATTGAAACTAGCATTTGCCCTTGATCAATACCCGAGTGTGGGTACAATTGAGTTTCTTGCATCGGAATTAAACTTAGCAACTAGGACAATAACAAACTGGTTCCACAACCATAGAATGAGGATCAAGCAACAATCACCTCATTCTGATTCACAGCAACAACAATCACAAACTGGTCCTGGATTTGACCCAATTCAGTTTAAAATTCTCTTGAGCCATCGACTAGGTTTCGGTGGCCTTCCAATACCGTTTAACGCAGGAAACCCTTATTTACAACATGGCGCCGATCTGTCTTCCTTCATGCCAATGTTTACGTCGTCCTCTTCGACTACTGTAGATGAGCAAATGTCCGGATTGGATTTGAGTGTGAAACATGAAGTAGACACTGACTTTGATGACGAAGATAGCCGGTCGGAAGAGTCGGAACCTCGAGAAGAAATCCCGGCCGTACCCGTAGTCGGAAGTTCTCGCAGAAAACCAGCTGCTCCGCAATGGGTAAACCCGGATTGGTTGCAATCCGAACAgaagcaacagcagcagcaatccgaagtaattataaatggcGTTTGCGTAATGCAAGCGGCCGATGGTTGTGCTGAAAGAAGAAGGTCTGAGACCATTCGAGTAGAACCGTCGGATGTTAACGACGAAGACAAGTCTGGTAGATCTACACCATCAGAAGCCAGTTCCTTAAAACAAGAATCAGATGGTGAACATGAACAGGAAGCTATCAGTGTTAAGGAAGAAAAATCGTGGAACAACGAATTTTAG
- Protein Sequence
- MDVQAMQSMDWLFKKERIYLLAQFWQQRATLAEKEVTTLKEQLTNNKAQDTNVMTMATPLSNHVESTEDQNKTPAELELSAKEKEISQLVEDVRRLQSSIGKLQDHTAKEIARLEEELHDKRQHIMRLEARLDAQRDYEEVKRQLCVLKAVECSDDRNNKSPNNNKSENTQGTSPQQQRSSCSPVPEIQNDFSVPVAPPPPGLQNVEQFGPILGEEIVANWRRSLECNKYEQKKVYTSPNRHETTDKEKSPGLESIKTPPPSTSPAPTSPSIMAQPARSASRSGTPCKSPTSESNSSPRLNNSSPHNNNNNPSQLNNNNNNNNNIPAGLINGLCGLNVGLNNNILGPAGALGFDLIKSPFDHRSPYRFGDGDCTMVGRFGESLIPKGDPMEARLQEMLRYNMDKYSTQNLDTLHIARRVRELLSIHNVGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDENAVMLLKSLIPKKGKDSGIPTVMGRTENDVTDERIVHILNEASQMMKPNQQQDDTQSNDESTSPNQLIRSTSPSRQRPKEDIPQEQVARLYQEELSKIMGKRLEDSMRSGEQPFAGWLFPHFFGNHTGNHDDIRTALDAYHRELSKLQNCPQSQLSGLLALQQQAAVAAMSNNNNNNNNNTIQGTGMAQDLSLPKDRKDIYPFVQRKDFAVKVNGTEVSDKESETVAEAMKQAGSAFSLVRPKTEQSGTSSVGSSASSPLGNNILPPEDFGQSAAVSPLQRMASITNALISQPATPHHHSPSQRPLKAVLPPITQQQFDQFNNLNTEEIVRKVKEQLSQFSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDKAVHKLVASQYKIAPEKLMRTGGYGGSSPMNQNLVKSTHTFGGKMTPSPLDLLKVSGDVDRQTPHHHILTSMCNTSTTMSEDSDMASSLQSPSNHHIQLQSPGGHHHATSSTASSLISTGSQLASMIVTENKLKASPIPNNGIPQNLMLQHVAAAFQNTGTRHPPAVVPSVYEMAALTQDLDTQTITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDQHNVERLQAIKSERRELNKRRRGSGQQDNGSDTSSNDTSDFYHSGTSSPPSAAKKQRVLFSDEQKEALKLAFALDQYPSVGTIEFLASELNLATRTITNWFHNHRMRIKQQSPHSDSQQQQSQTGPGFDPIQFKILLSHRLGFGGLPIPFNAGNPYLQHGADLSSFMPMFTSSSSTTVDEQMSGLDLSVKHEVDTDFDDEDSRSEESEPREEIPAVPVVGSSRRKPAAPQWVNPDWLQSEQKQQQQQSEVIINGVCVMQAADGCAERRRSETIRVEPSDVNDEDKSGRSTPSEASSLKQESDGEHEQEAISVKEEKSWNNEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01346874;
- 90% Identity
- iTF_01346358;
- 80% Identity
- iTF_01304748;