Rnym008890.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- Su(H)
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000011.1:1659771-1660678[-]
Transcription Factor Domain
- TF Family
- CSL
- Domain
- BTD domain
- PFAM
- PF09270
- TF Group
- Beta-Scaffold Factors
- Description
- Members of this family of DNA binding domains adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and co-repressors (SMRT/N-Cor and CIR) [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2 1.4e+04 -3.4 0.0 24 44 194 214 186 218 0.43 2 2 5.6e-16 3.5e-12 47.0 0.0 1 40 232 271 232 273 0.96
Sequence Information
- Coding Sequence
- atggGAACCTGGACGCTAAAATCAGAGAAAGATGGTGATACGGATGATGGTGAAGTGGTAGGCTCTTTAAGCTGTTATAACTCCGCGGAACTTCTTGGAGTGCCAGCAAGGATGCCTCACCACTATGGCCCTGAAGCACCAATGCAATTTCGACCAGAACAACGTCTAACTAGAGATGCAATGGAGAGATATTTACGAGATCGCAATGATTTAGTGTTGGTTATTCTTCACGCTAAAGTAGCTCAGAAATCGTACGGTAAtgaaaaacggtttttttgtCCACCCCCATGCATATACTTATTTGGCGATGGCTGGAGACTTCGACAAGAACAGTTGTTAAGAGAAGGGGTGTCTGAAGCTAATTCTCAGATGAGTGCCTTTATTGGTATTGGAAGCACTGATCAAGAGTTACAGCCACTCGACCTTAACAACGGAAAGCAATATTGTGCTGCCAAAacgttatttatttcagattcAGATAAacgaaaacattttatgttaatgGTTAGAATGTTTTATAACATTGGTTATGACATTGGTACATTCCATAGTAAACGAATAAAGGTTATATCGAAACCatcaaagaaaaaacaatCGTTAAAAAATGCTGATTTGTGTATAGCAAGTGGAACAAAGGTAGCGTTGTTCAATAGGTTAAGGTCCCAAACAGTCAGTACACGTTACTTGCACGTAGAAAAGGGTAATTTTCATGCTAGCTCGACGCAATGGGGTGCATTTACTATCCATTTGTTAGATGATGATGAAAGTGAAAGTGAAGAATTTAATGTTAGAGATGGATATGTTCATTATGATGGCCCTTCTAGAAGCTGA
- Protein Sequence
- MGTWTLKSEKDGDTDDGEVVGSLSCYNSAELLGVPARMPHHYGPEAPMQFRPEQRLTRDAMERYLRDRNDLVLVILHAKVAQKSYGNEKRFFCPPPCIYLFGDGWRLRQEQLLREGVSEANSQMSAFIGIGSTDQELQPLDLNNGKQYCAAKTLFISDSDKRKHFMLMVRMFYNIGYDIGTFHSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEKGNFHASSTQWGAFTIHLLDDDESESEEFNVRDGYVHYDGPSRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -