Rnym017180.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- Rfx2
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000022.1:6142771-6149810[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-34 4.8e-31 107.7 0.1 3 78 260 335 258 336 0.97 2 2 3 1.3e+04 -2.6 0.0 9 36 470 495 464 517 0.72
Sequence Information
- Coding Sequence
- ATGGCGATTTCGATAAGGAGTAAAATCAAATTAGAAGGATCAGCTAGTACTAGCTCTCAAATTAATGCTGTAACTGTTATAAAAACTGGTGAGGTTGGAGAAACTCGTATCATACAACCAGTACAACAAATTTTTGTAAATATCAATAGTAATAGACAACTTGCAAGTGCTACACCGTGTGAAATTAATCCAGTTCATGATAATGTTTCTGATAGATTAATAGATGATGATGAACATCACCTAGATCATAAAGATAGAAATTCTTCTACAGTTACTGTCAATAATGATCATTATGTTGTAGCAGAATTGGTTCCCAAATTAGAGCCTATTGATTCTGATGACTTTGATTCTACTTATGTACAGTATGTTGAAGAAACCAGTAAACAagcaattttcaaaaatgaacaaaatatgacGTACCCAATTTATACTGTGAGTGGGAGTGGAGCAATGTATCAAGCTGGTCAGACCCATTACGCTCCAAGCACAAATTCTTATTCAcaaGTTATAAACACCTTAGGCCAACCAATATGTCATGcacaaattataagtaatgaaacctatattatacaacagaaCATTGATAATTGTCATACTATTATGTCTACTTCTCAAAGAGATAGCCTAAATTCTACTATATCTTcggatATGTCATATCACACAGTAAGCACTATTGACTCTGACATAACAAACACAAATATAGATCAATTGAATGGTATCAAGTTAAATACAGTAATGCAAAACTCCAGTCTTACgcacacaaataaaatttctccTATAactgtCAACTGGCTGATGGAAAATTATGAAATGGCTGAAGGAATGTCGTTACTTCGATcaacaatatataatcattatttaacacATTGCTCGGAAACTAAAATCGATCCTGTAAATGGACCATCATTTGGTAAAATTATCCGATCTGTGTTTACGGGATTACGTACAAGACGTCTTGGAACTCGaggAAATtccaaatatcattattatggtattagaattaaatttagttcattattaaatgacTTTAAAGAAGAAGAAAACCTACCAGGTcaaacaaatcaaaataatagttcaaaaaatattaagtttattaaaacgGAAGAGCAAAATTGCAATCAATATACCAACAACAGTTCAGATTCTACTTATTGTTCTCAAAACTTTATTCCATCTTCTCCTCAATCACAAGACCAAGAATATTTAGGCGATGGTACTAATGTTGTACCAGAATTTcctgatattatattgaatgaaCAAGAATTGGATGATAATTGTACTTTAGAAGATGTAGATACATTCAAAAATTTGTACCGTGAACATTATGAAGCGTTTTTAGGTGCTATATTGAATTTAGAATTTGACACTGTTGAGTCACTTTGGTGTCAATTTTGGCATAgtcaagttaataataatgatgaatgtgaagaaaaaaaatatttatctaaagaaaaattatattcattgtcCAAGTGCAaaacattacaattatttgtgaAAACTGCTGACTttctattttatcaaaacttaGTGAAAGTTTTAATTCCAGATGTTCTTCGGCCTGTTCCTAgaACATTAACACAAGCCATTAGACATTTTTCCAAAGGTGTAGAGTCATGGCTTATTTCTGCAATGCAGGGATGCCCAGAAGAAATGAtttcaataaaagtgACTGCTGTTAGAACTTTTGCACAAACATTACGCAGATATACTACTGCTAGAGCTGTGCTTCAAAATTATACCCAAATAAATCAAATGCTTACTGATTTGAATCATGTGGACTTCCATAATATACAAGAACAAGTTCAACTAATAAATACTTTGGGAAGTGAAAATGATTCAGTTTATAGAAAGAAGAgagtttatactaaaataaatgaatgctCTGAAATGCTTTCAGATTTTAATGAACTctctaaaaaaacaaaaattcacAATTATTCAGCCACTACTTCCATagatacaaaatgttttaatgtcttAATAAAAAATCCATCTAAAGAAACCAACAACAATAAATCTAAGatGGAAATAAAAGAAGAAATACAGTTGAAAGATGAATTTGAACAAAAACATCACTTAAAAATGGAGTACATGAAAGAAGAAATATTTGAAGATCATACACAAGAGATATATAATGatactGTTATGATTAACTCTCCTTACAATCCAAGTGTTTCAAAAATCCATGAAGAGTACCCTAAATTATctcataaattatcaaaaaaaaaaaagaatgaacagaaaataataattgagacggAAATAATGTCTCCGACCAACTCAAATAAACGTAAACGACAGACGACTGATAAAGAATATTCTAAAAACGATTTGTATCGATCAGTGGATTCGAGTGAGGAGGCATATGGCAGTAATAATCGTTTCGGTGATGACAGTAgagataattttgaatttttcgcTGCTCAAGACGATTACCAGTCGAAATATCCCACTATGGCTAACACAGGTCTGTTTTCTTGTCAGTTTTGCGACAAAGAATTTAGCAACGCCAATAGCTTATCAAGACACGAAAATTTTCACACTGGAAAAACTCCTATCGAGTGTGACATctgttttaaaacatttatcagCAAATCcatattgtgtatacataaaaGATCGCATACCGGAGAGAAACCATATGCGTGCAACGTTTGTGGACGATCGTTTACTCAAAAATCACATTTGGTCTTACATTATAGAACACACACAGGCGAAAAACCATACGAGTGCGGCctgtgtgaaaaaaaattctcatCAACCAGTGGTCGAGCAGAACATACGCGTAGACGTCACCCTTACGTTTGA
- Protein Sequence
- MAISIRSKIKLEGSASTSSQINAVTVIKTGEVGETRIIQPVQQIFVNINSNRQLASATPCEINPVHDNVSDRLIDDDEHHLDHKDRNSSTVTVNNDHYVVAELVPKLEPIDSDDFDSTYVQYVEETSKQAIFKNEQNMTYPIYTVSGSGAMYQAGQTHYAPSTNSYSQVINTLGQPICHAQIISNETYIIQQNIDNCHTIMSTSQRDSLNSTISSDMSYHTVSTIDSDITNTNIDQLNGIKLNTVMQNSSLTHTNKISPITVNWLMENYEMAEGMSLLRSTIYNHYLTHCSETKIDPVNGPSFGKIIRSVFTGLRTRRLGTRGNSKYHYYGIRIKFSSLLNDFKEEENLPGQTNQNNSSKNIKFIKTEEQNCNQYTNNSSDSTYCSQNFIPSSPQSQDQEYLGDGTNVVPEFPDIILNEQELDDNCTLEDVDTFKNLYREHYEAFLGAILNLEFDTVESLWCQFWHSQVNNNDECEEKKYLSKEKLYSLSKCKTLQLFVKTADFLFYQNLVKVLIPDVLRPVPRTLTQAIRHFSKGVESWLISAMQGCPEEMISIKVTAVRTFAQTLRRYTTARAVLQNYTQINQMLTDLNHVDFHNIQEQVQLINTLGSENDSVYRKKRVYTKINECSEMLSDFNELSKKTKIHNYSATTSIDTKCFNVLIKNPSKETNNNKSKMEIKEEIQLKDEFEQKHHLKMEYMKEEIFEDHTQEIYNDTVMINSPYNPSVSKIHEEYPKLSHKLSKKKKNEQKIIIETEIMSPTNSNKRKRQTTDKEYSKNDLYRSVDSSEEAYGSNNRFGDDSRDNFEFFAAQDDYQSKYPTMANTGLFSCQFCDKEFSNANSLSRHENFHTGKTPIECDICFKTFISKSILCIHKRSHTGEKPYACNVCGRSFTQKSHLVLHYRTHTGEKPYECGLCEKKFSSTSGRAEHTRRRHPYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01305120;
- 90% Identity
- iTF_01305120;
- 80% Identity
- iTF_01305120;