Rmai009597.1
Basic Information
- Insect
- Rhopalosiphum maidis
- Gene Symbol
- pnr
- Assembly
- GCA_003676215.3
- Location
- NC:26173717-26183104[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.7 4.1e+03 -3.1 0.1 3 8 13 18 12 26 0.74 2 3 5e-16 1.2e-12 46.6 3.2 1 35 425 458 425 459 0.97 3 3 7.6e-18 1.8e-14 52.4 6.8 1 35 483 516 483 517 0.97
Sequence Information
- Coding Sequence
- ATGACCGTTGTTTGTTCCTCTATAACGTCCTGGACACAATGTCGTACGACGTCAAAAGTGAtacacGGCATGGAGGGCGACGGGACTTCTAGAGGGGTGATAAGACCCGCCCCGGCACATATCAGGACCATTACGACGTCGGGGCTCATAACCACCGTGCCTAATATCGAAGGGCAGACCAGGAACGAGAGCAATGCGGCAGACACCATGTCGCAGTTAAAAGTGCAACAACAGAGAGACTTTGGACACAACGGATTATCTAGAAACTGTACTCCCGATAATACGGAATGCGTACCGACGGAGGTGCTTATGGACGGATTCAATGAAAACGGCACTCCGGCTGCACACACGCCCGAAGAGGCTGCGTCACCAGACGAATACCAAAAGGACCATAGTCCGCCCGCAGAAGCTATCCGACTGCGGAGAAATGTGGATGGTACCGAAGTGAATTTGCAAATACCGATGGAAAAGTTGCCCACATTTCATGGGTACGTCGCTACCACTGAATTCCCAAACCATAATCAGAGATATCAGCGGATCAGATACTTGGAGTATCGAGGACAGTCGCCTGAAGATGGCAGTGGTGGCGGCGGAGGTGGTTTTGAACAGCCCCTGATCAAGTACGAGCATCAtcagcaacagcaacagcaaaataaaatggaTCCGAATTCCAGTTATGTAACTCTAGAGTCGGTTACGGACGTCTatcaacagcagcagcaacaacagcagcagcagcaacaacaacaacaacaacaacaacaacaacaacaacaacaacagcaacagcagaATTACCAGCAACAGAACACGTACCAGACATACCAAACGTACGAAAGCGAACAACCAGTGAACGACATATTCAACATTTATGACAAGGAGAGCCATGGCGGTGGCGGAGATTACGGTGTAAAGGCCGGTCACCAGAAGGGTGGTTACGTTCAACAGACCCTGAtgcagcaacaacaacaacagcagcaacCCGAGTATCAAGACGACGTCAACGGTAGTGGTGGCGGCGGGGGTGGTGGCGAGGGACAACCGGATTTCTGGGGACACCATGAGCAACAGGTGGCAGACTTCACAACGGCGGCAAACGAAACTTTAGCAGCAGCCAATGCGCTGCAAATTCAAGAAGTAGGCCTAGGACCCCCGGATGGAAGCATACAGGTGACTCAGCAGTATGCCATTTTCCAGACCGGTAACCCCGGACCGTCGTGGATCGACGAACACTACGATCAAAATGGTATCCTGAACGTGGACATGAAGGAATGCGTGAATTGCGCAGCCAACGTGACGCCCCTGTGGCGAAGGGACGGCACGGGCCACCATCTATGCAACGCGTGCGGCTTGTACAACAGGATCAACGGAGTGAATCGGCCGCCGGTCAGGTCCGCGCAAAAGAAAACCACCCAACAAACAGGAAACAAACGTTCCGGAGTGGCCTGTGCTAACTGCTCGACAAATACGACGACTCTGTGGAGACGAAACAACAACGGAGAACCTGTGTGTAACGCTTGTGGTCTCTATTTCAAATTGCACAACGTCAATAGGCCGTTGACGATGAAGAAAGACGGCATACAAACGAGAAAAAGGAAACCGAAAAACCCGTCCATCGGTGGTTTCAGCCAAAATTCGTCGTCTAAAGAGAAagGAGAAGTAACAACAAAGCTTCTACTTCCTCACTTGTTTACTAATTCTTCGGATAACAAACATCAACACGGACATCTTAGTTACGATCAAGCTGTGATGACATCACAAGAACACTTCCTGCCTCACGGCTCTCAAATTCACATCCCTTCATTACCCCCACCGCCAACAAACCTTAACCGTCATACATCTAataatggGCAATCGATGGAACAATTGGGTTCTAGAGACATGCTGACCACTGTGATCACTTCTACCGGAAATCAAAATGTAAGAGACGATTAA
- Protein Sequence
- MTVVCSSITSWTQCRTTSKVIHGMEGDGTSRGVIRPAPAHIRTITTSGLITTVPNIEGQTRNESNAADTMSQLKVQQQRDFGHNGLSRNCTPDNTECVPTEVLMDGFNENGTPAAHTPEEAASPDEYQKDHSPPAEAIRLRRNVDGTEVNLQIPMEKLPTFHGYVATTEFPNHNQRYQRIRYLEYRGQSPEDGSGGGGGGFEQPLIKYEHHQQQQQQNKMDPNSSYVTLESVTDVYQQQQQQQQQQQQQQQQQQQQQQQQQQQQNYQQQNTYQTYQTYESEQPVNDIFNIYDKESHGGGGDYGVKAGHQKGGYVQQTLMQQQQQQQQPEYQDDVNGSGGGGGGGEGQPDFWGHHEQQVADFTTAANETLAAANALQIQEVGLGPPDGSIQVTQQYAIFQTGNPGPSWIDEHYDQNGILNVDMKECVNCAANVTPLWRRDGTGHHLCNACGLYNRINGVNRPPVRSAQKKTTQQTGNKRSGVACANCSTNTTTLWRRNNNGEPVCNACGLYFKLHNVNRPLTMKKDGIQTRKRKPKNPSIGGFSQNSSSKEKGEVTTKLLLPHLFTNSSDNKHQHGHLSYDQAVMTSQEHFLPHGSQIHIPSLPPPPTNLNRHTSNNGQSMEQLGSRDMLTTVITSTGNQNVRDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00973384;
- 90% Identity
- iTF_00134974;
- 80% Identity
- -