Rmai007372.1
Basic Information
- Insect
- Rhopalosiphum maidis
- Gene Symbol
- -
- Assembly
- GCA_003676215.3
- Location
- NC:72826514-72838600[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.9e-13 8e-10 37.6 0.0 9 72 111 180 108 184 0.91 2 3 2.9 2.6e+03 -2.5 0.1 59 73 215 229 195 231 0.63 3 3 1.4 1.2e+03 -1.4 0.0 50 76 289 323 246 324 0.71
Sequence Information
- Coding Sequence
- atggaaCTTAGTAAAGAAACAGGTGAGCCTATGGAAGTAGAAGAGCCAACTGATAGTCCAtccaatgttcataaaaatcatgttaataaaaagaaacaatCTAAATCAAATAtatcaaCACCAGAACCTTATGATATAAAGAATAATTGGAGTAATAAGAGGCATAAGAAAGACAACACACGCAGTGATACCTTAGAACCTTTGAAATTACATGTTCCGCCTTCTTTAGaaCTTACCATTCCTACATTCAACTTAACTTCTTCTTACACTAGAATGCATCGTAGTACAGCCAGAAGAATTAAGTCTGATGTTAGTGGTGCTATTTTCAAAATCCCATTTGAGCAtggatGGAAACGAGAATTAGTTTATAGAACATCAGGCGAATCTGCTGCTCTTAATCGGGCACATAAAAAAGCTGATGTATACTATCATTCTCCAAATAACCAAAAATTACGATCATTACGAGAAATTCAGgaacaattgaatattttatctgaTAAAAGTGTTTTAACTATAGattgttttacttttgttAGAAAACCAATTGGTGTCAATGATAGATCAAAAGAACTGATCAGAGATGCATGTTTCAAATCATTTaagGAAAACACTTCTGTTGGCGCTGCTCaatctaaaaaatctaaaacaccTACACAGCGCCcatcatttgattttaaaaacaaaaagtctgctagtaaaacgaaaaaaaaatcgaagacTTCTTTAAGATCAAGATCCAAAaaagGCAATGGAAACAAAAATTCTGCtagtaaaatgaaaattgtttttaaaactgtgAAGACTTCCTCAAGATTAAGATCCAAAaaaggGAATTCAGAATCAATGGATACATCTTCATCCACACCTAAATACATATCTGAAGACCAGCAAGCTATTCAATCTAGTGTATCGACAAAAGTCTCTCCTAAACTTGAGaacattgatataaatacCACAATCATGAAAAAACGaAATTCTGAAATGAATGGTTCATTTAAAGAAATGTCAACTACTCTCGCATCTATGCAAACATTAAACTACATGGTTAAAGCATTGGGacacgtttttaaatatttaactacacGTGAGCTTTTATCCGCTTCTAGAGTATGTACCACCTGGAATATAATTGCAATGAACAAGTTtttatggcAAAATTgtcgtttaaaaaattctatggTCTATGACTGGGAAAGGTTTGTAGACTCGATTGATCAACAAAGAACTAATACGTTAGATACTAGACGAATGTTATTACCTGTACAAATTgatgaattcaaaaatttttggTTGCATTTTTCCAAAGCAATGAAAAGAgcacagaatttaaaattcattgaattgtATAGATGTCCTACCCATGTAGTTGAAGATATTATTCACTCATTACCTCAACTTGAAGTACTTAATGCAACttcaataaaaaatccaAATGTAACAAAAGAGACAAAAAATCCCCATGATCTTATGGccctaaacttaaattatttaggccAAATGACAAACCTCACTGAGTTAAGACTAAAAGGTTTAACTGGAATCAAATTAACGTCATTGCcatcatttgaaaatttaataaatttaaataaattttcaTTAACCTCTATAAATTCATTTCCAAAAGACATCTGTCAGAGTTTGGATACTATTACTGATAACATAAAGTTTTTGGAAATTGGTGATTGCGATGTCTTATCAAAAGATTTTGCTGTGTCACTAAAAAGATTTGTCAATTTGAAATCGTTGAGACTGGAAAATTGTTGCGGTAAATGGGAAAGTTATGTACACGACGTTTTTACTGCTATAAGGGGTCTTGAAAAGCTTACTATTCTGGAATTAGTAAACATAGAATTCAGTAATTGTGTTGAAGATGAATTGGAAAAATGTGTTGGCATTAAAGCTTTATTGATTATTCCTGCTTATATGAGCAAaactGCAATCACCAACTGCCACTTGATTGACTGCCTCGAGAAACTCTCCAAGACATTAACACACTTGGTTTGGGGATTGACTCGTGAATTACTCAATGTTACTGacatatttataactacaTGTCAACAAAACCAGcatattattggttataatttagaattatcCCATATCAACGAAAATACCAACTACATACCTATACTAAGGACAAGAAAACCCAGACAGCGACCAGAAGAAGAGTCTGCTCCCAAAAATGacaagaataaaaacaaattaaatgaaattaacttTCTTTCAGTTCCTGATCTAGAGAAACTGTTAGATACAATGATGCCAAATGCTAAAACTAGGGTAATTAAAGTTCCCTTTTCAAGAACAGTTAGAGTTTATTTGAGTGAACAGTTTAATTATCtttga
- Protein Sequence
- MELSKETGEPMEVEEPTDSPSNVHKNHVNKKKQSKSNISTPEPYDIKNNWSNKRHKKDNTRSDTLEPLKLHVPPSLELTIPTFNLTSSYTRMHRSTARRIKSDVSGAIFKIPFEHGWKRELVYRTSGESAALNRAHKKADVYYHSPNNQKLRSLREIQEQLNILSDKSVLTIDCFTFVRKPIGVNDRSKELIRDACFKSFKENTSVGAAQSKKSKTPTQRPSFDFKNKKSASKTKKKSKTSLRSRSKKGNGNKNSASKMKIVFKTVKTSSRLRSKKGNSESMDTSSSTPKYISEDQQAIQSSVSTKVSPKLENIDINTTIMKKRNSEMNGSFKEMSTTLASMQTLNYMVKALGHVFKYLTTRELLSASRVCTTWNIIAMNKFLWQNCRLKNSMVYDWERFVDSIDQQRTNTLDTRRMLLPVQIDEFKNFWLHFSKAMKRAQNLKFIELYRCPTHVVEDIIHSLPQLEVLNATSIKNPNVTKETKNPHDLMALNLNYLGQMTNLTELRLKGLTGIKLTSLPSFENLINLNKFSLTSINSFPKDICQSLDTITDNIKFLEIGDCDVLSKDFAVSLKRFVNLKSLRLENCCGKWESYVHDVFTAIRGLEKLTILELVNIEFSNCVEDELEKCVGIKALLIIPAYMSKTAITNCHLIDCLEKLSKTLTHLVWGLTRELLNVTDIFITTCQQNQHIIGYNLELSHINENTNYIPILRTRKPRQRPEEESAPKNDKNKNKLNEINFLSVPDLEKLLDTMMPNAKTRVIKVPFSRTVRVYLSEQFNYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01304189;
- 90% Identity
- iTF_01304189;
- 80% Identity
- iTF_01304189;